PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000259607	[[34709001, 34709424], [34709496, 34709679], [34709773, 34709894], [34709996, 34710121]]	[[34709390, 34709424], [34709496, 34709679], [34709773, 34709894], [34709996, 34710063]]
ENST00000378792	[[34709271, 34709679], [34709773, 34709894], [34709996, 34710066]]	[[34709492, 34709679], [34709773, 34709894], [34709996, 34710063]]
NM_002989	[[34709001, 34709424], [34709496, 34709679], [34709773, 34709894], [34709996, 34710164]]	[[34709390, 34709424], [34709496, 34709679], [34709773, 34709894], [34709996, 34710063]]

Promoter

Chrom	Start	End	Description
chr9	34710125	34710140	CAGE_peak_1_at_CCL21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I034743	34743960	34746502	0.46	[{'connected_gene': 'CCL21', 'score': 11.66}, {'connected_gene': 'CCL19', 'score': 10.9}, {'connected_gene': 'PHF24', 'score': 10.39}, {'connected_gene': 'FAM205A', 'score': 8.54}]
chr9	GH09I034709	34709695	34710503	0.7	[{'connected_gene': 'CCL21', 'score': 550.77}, {'connected_gene': 'FAM205BP', 'score': 11.87}, {'connected_gene': 'IL11RA', 'score': 10.95}, {'connected_gene': 'GALT', 'score': 10.92}, {'connected_gene': 'RPP25L', 'score': 5.46}, {'connected_gene': 'FAM205A', 'score': 5.06}, {'connected_gene': 'CCL19', 'score': 0.37}]
chr9	GH09I034714	34714124	34714273	0.2	[{'connected_gene': 'CCL21', 'score': 0.77}, {'connected_gene': 'FAM205A', 'score': 0.37}]
chr9	GH09I034691	34691266	34691325	0.5	[{'connected_gene': 'CCL19', 'score': 550.77}, {'connected_gene': 'CCL21', 'score': 0.37}]
chr9	GH09I034729	34729478	34729537	0.5	[{'connected_gene': 'FAM205A', 'score': 550.77}, {'connected_gene': 'CCL21', 'score': 0.37}]
chr9	GH09I034715	34715210	34716361	0.2	[{'connected_gene': 'RPP25L', 'score': 10.1}, {'connected_gene': 'FAM205A', 'score': 4.9}, {'connected_gene': 'CCL21', 'score': 0.44}]
chr9	GH09I034700	34700986	34702853	1.07	[{'connected_gene': 'RPP25L', 'score': 6.23}, {'connected_gene': 'DNAJB5', 'score': 4.37}, {'connected_gene': 'CCL21', 'score': 0.44}, {'connected_gene': 'CCL19', 'score': 0.39}]
chr9	GH09I034675	34675164	34675333	0.76	[{'connected_gene': 'PIR49106', 'score': 550.77}, {'connected_gene': 'ENSG00000230074', 'score': 20.95}, {'connected_gene': 'IL11RA', 'score': 12.11}, {'connected_gene': 'GALT', 'score': 12.05}, {'connected_gene': 'CCL21', 'score': 11.46}, {'connected_gene': 'ARID3C', 'score': 11.24}, {'connected_gene': 'LOC730098', 'score': 0.44}]