PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr16	18801619	18801630	CAGE_peak_2_at_RPS15A_5end
chr16	18801643	18801662	CAGE_peak_1_at_RPS15A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I018961	18961610	18963188	0.43	[{'connected_gene': 'RPS15A', 'score': 4.94}, {'connected_gene': 'TMC7', 'score': 0.34}, {'connected_gene': 'ENSG00000260352', 'score': 0.28}]
chr16	GH16I018958	18958896	18960195	0.84	[{'connected_gene': 'RPS15A', 'score': 4.81}, {'connected_gene': 'TMC7', 'score': 0.34}, {'connected_gene': 'ENSG00000260352', 'score': 0.29}]
chr16	GH16I019679	19679649	19682807	0.72	[{'connected_gene': 'RPS15A', 'score': 21.16}, {'connected_gene': 'C16orf62', 'score': 16.57}, {'connected_gene': 'KNOP1', 'score': 13.74}, {'connected_gene': 'IQCK', 'score': 10.3}, {'connected_gene': 'CCP110', 'score': 10.22}, {'connected_gene': 'SYT17', 'score': 4.17}, {'connected_gene': 'GC16M019688', 'score': 0.44}, {'connected_gene': 'GC16M019687', 'score': 0.44}]
chr16	GH16I018786	18786475	18791478	2.51	[{'connected_gene': 'RPS15A', 'score': 563.31}, {'connected_gene': 'ARL6IP1', 'score': 13.67}, {'connected_gene': 'CCP110', 'score': 12.66}, {'connected_gene': 'COQ7', 'score': 9.72}, {'connected_gene': 'ENSG00000205746', 'score': 4.97}, {'connected_gene': 'GC16M018782', 'score': 0.77}, {'connected_gene': 'ENSG00000260342', 'score': 0.39}]
chr16	GH16I019091	19091587	19093326	1.19	[{'connected_gene': 'RPS15A', 'score': 13.61}, {'connected_gene': 'COQ7', 'score': 6.92}, {'connected_gene': 'ENSG00000260430', 'score': 0.44}, {'connected_gene': 'GC16P019109', 'score': 0.37}]
chr16	GH16I019554	19554337	19556914	2.09	[{'connected_gene': 'C16orf62', 'score': 560.92}, {'connected_gene': 'RPS15A', 'score': 22.6}, {'connected_gene': 'CCP110', 'score': 19.09}, {'connected_gene': 'COQ7', 'score': 10.09}, {'connected_gene': 'TMC5', 'score': 7.67}, {'connected_gene': 'KNOP1', 'score': 6.91}, {'connected_gene': 'GDE1', 'score': 5.0}, {'connected_gene': 'GC16M019688', 'score': 0.12}, {'connected_gene': 'GC16M019687', 'score': 0.12}]
chr16	GH16I019715	19715699	19719658	2.26	[{'connected_gene': 'KNOP1', 'score': 593.97}, {'connected_gene': 'IQCK', 'score': 555.93}, {'connected_gene': 'RPS15A', 'score': 13.58}]
chr16	GH16I018818	18818940	18820280	0.2	[{'connected_gene': 'ARL6IP1', 'score': 14.38}, {'connected_gene': 'RPS15A', 'score': 12.05}, {'connected_gene': 'COQ7', 'score': 10.03}, {'connected_gene': 'GC16M018804', 'score': 0.39}, {'connected_gene': 'LOC100996247', 'score': 0.22}, {'connected_gene': 'SMG1', 'score': 0.14}]
chr16	GH16I018780	18780124	18782389	0.43	[{'connected_gene': 'ARL6IP1', 'score': 9.19}, {'connected_gene': 'ENSG00000205746', 'score': 4.94}, {'connected_gene': 'RPS15A', 'score': 0.44}, {'connected_gene': 'GC16M018782', 'score': 0.44}, {'connected_gene': 'PIR49143', 'score': 0.12}]
chr16	GH16I018784	18783844	18784289	0.69	[{'connected_gene': 'ARL6IP1', 'score': 13.28}, {'connected_gene': 'GC16M018782', 'score': 0.77}, {'connected_gene': 'RPS15A', 'score': 0.44}, {'connected_gene': 'PIR49143', 'score': 0.11}]
chr16	GH16I019005	19005202	19006873	1.16	[{'connected_gene': 'COQ7', 'score': 14.43}, {'connected_gene': 'RPS15A', 'score': 10.65}, {'connected_gene': 'TMC7', 'score': 8.1}, {'connected_gene': 'GC16P019012', 'score': 0.44}]
chr16	GH16I018793	18793179	18793328	0.46	[{'connected_gene': 'COQ7', 'score': 9.34}, {'connected_gene': 'RPS15A', 'score': 0.77}, {'connected_gene': 'ENSG00000260342', 'score': 0.44}, {'connected_gene': 'ARL6IP1', 'score': 0.44}]
chr16	GH16I018796	18796539	18796688	0.31	[{'connected_gene': 'ENSG00000260342', 'score': 0.77}, {'connected_gene': 'RPS15A', 'score': 0.44}, {'connected_gene': 'ARL6IP1', 'score': 0.44}]
chr16	GH16I018783	18783119	18783268	0.43	[{'connected_gene': 'GC16M018782', 'score': 0.77}, {'connected_gene': 'RPS15A', 'score': 0.44}, {'connected_gene': 'PIR49143', 'score': 0.11}]
chr16	GH16I018785	18785619	18785768	0.58	[{'connected_gene': 'GC16M018782', 'score': 550.77}, {'connected_gene': 'RPS15A', 'score': 0.77}, {'connected_gene': 'PIR49143', 'score': 0.11}]
chr16	GH16I019487	19487201	19489422	1.15	[{'connected_gene': 'ENSG00000260592', 'score': 550.77}, {'connected_gene': 'COQ7', 'score': 20.4}, {'connected_gene': 'SMG1', 'score': 13.02}, {'connected_gene': 'RPS15A', 'score': 10.59}, {'connected_gene': 'SYT17', 'score': 10.4}, {'connected_gene': 'KNOP1', 'score': 7.69}, {'connected_gene': 'CCP110', 'score': 6.76}, {'connected_gene': 'TMC5', 'score': 5.64}, {'connected_gene': 'GDE1', 'score': 4.61}, {'connected_gene': 'GC16P019498', 'score': 0.39}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000322989	[[18792616, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801565, 18801656]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]
ENST00000572008	[[18793312, 18793541], [18794185, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801631, 18801656]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]
ENST00000563390	[[18794277, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801631, 18801705]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]
ENST00000574723	[[18794283, 18794424], [18796059, 18796145], [18800302, 18800440], [18801631, 18801684]]	[[18796119, 18796145], [18800302, 18800435]]
ENST00000575669	[[18794289, 18798117]]	None
ENST00000576436	[[18794289, 18796145], [18797561, 18797658], [18799384, 18799464], [18800302, 18800459]]	[[18796119, 18796145], [18797561, 18797658], [18799384, 18799464], [18800302, 18800435]]
ENST00000562935	[[18794289, 18794424], [18796059, 18796145], [18799384, 18799427], [18800302, 18800440], [18801631, 18801656]]	[[18799407, 18799427], [18800302, 18800435]]
ENST00000569365	[[18794289, 18794424], [18796059, 18796145], [18799384, 18799481], [18800302, 18800440], [18801631, 18801656]]	[[18799464, 18799481], [18800302, 18800435]]
ENST00000576008	[[18794289, 18794424], [18796059, 18796145], [18797561, 18797658], [18799384, 18799464], [18800302, 18800440], [18801631, 18801684]]	[[18796119, 18796145], [18797561, 18797658], [18799384, 18799464], [18800302, 18800435]]
ENST00000565420	[[18794290, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801218, 18801582]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]
ENST00000563579	[[18794302, 18794424], [18794962, 18795036], [18796059, 18796147]]	[[18794410, 18794424], [18794962, 18795036], [18796059, 18796147]]
ENST00000569083	[[18795342, 18796145], [18799384, 18799464], [18800302, 18800441]]	[[18796055, 18796145], [18799384, 18799464], [18800302, 18800435]]
ENST00000573554	[[18799865, 18800440], [18801631, 18801662]]	None
NM_001019	[[18794276, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801565, 18801656]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]
NM_001030009	[[18794276, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800440], [18801631, 18801656]]	[[18794330, 18794424], [18796059, 18796145], [18799384, 18799464], [18800302, 18800435]]