PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000274242	[[40825363, 40832675], [40834282, 40834367], [40834572, 40834708], [40835284, 40835437]]	[[40832605, 40832675], [40834282, 40834367], [40834572, 40834708], [40835284, 40835287]]
ENST00000511787	[[40827804, 40828053], [40831424, 40831496], [40832543, 40832657]]	None
ENST00000509877	[[40832204, 40832675], [40834572, 40834708], [40835284, 40835314]]	[[40832589, 40832675], [40834572, 40834708], [40835284, 40835287]]
ENST00000507642	[[40832549, 40832675], [40834062, 40834139], [40834282, 40834367], [40834572, 40834709]]	None
ENST00000504562	[[40832559, 40832675], [40834282, 40834367], [40834572, 40834708], [40835120, 40835288]]	None
ENST00000508493	[[40833980, 40834367], [40834572, 40834708], [40835284, 40835314]]	[[40834257, 40834367], [40834572, 40834708], [40835284, 40835287]]
NM_000997	[[40831429, 40832675], [40834282, 40834367], [40834572, 40834708], [40835284, 40835387]]	[[40832605, 40832675], [40834282, 40834367], [40834572, 40834708], [40835284, 40835287]]

Promoter

Chrom	Start	End	Description
chr5	40834650	40834691	CAGE_peak_2_at_RPL37_5end
chr5	40835281	40835284	CAGE_peak_4_at_RPL37_5end
chr5	40835288	40835292	CAGE_peak_3_at_RPL37_5end
chr5	40835303	40835335	CAGE_peak_1_at_RPL37_5end
chr5	40835746	40835760	CAGE_peak_5_at_RPL37_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I040783	40783500	40785973	0.84	[{'connected_gene': 'CARD6', 'score': 18.23}, {'connected_gene': 'TTC33', 'score': 17.38}, {'connected_gene': 'SNORD72', 'score': 11.55}, {'connected_gene': 'RPL37', 'score': 11.54}, {'connected_gene': 'ENSG00000212567', 'score': 0.44}, {'connected_gene': 'GC05M040791', 'score': 0.44}, {'connected_gene': 'PRKAA1', 'score': 0.39}]
chr5	GH05I040802	40802039	40802188	0.97	[{'connected_gene': 'SNORD72', 'score': 12.2}, {'connected_gene': 'RPL37', 'score': 12.2}, {'connected_gene': 'CARD6', 'score': 10.99}, {'connected_gene': 'PRKAA1', 'score': 0.77}, {'connected_gene': 'GC05P040818', 'score': 0.37}]
chr5	GH05I040832	40832135	40836822	2.35	[{'connected_gene': 'SNORD72', 'score': 550.77}, {'connected_gene': 'RPL37', 'score': 550.77}, {'connected_gene': 'GC05M040833', 'score': 550.77}, {'connected_gene': 'PRKAA1', 'score': 52.14}, {'connected_gene': 'CARD6', 'score': 18.56}, {'connected_gene': 'TTC33', 'score': 13.27}, {'connected_gene': 'PLCXD3', 'score': 4.82}]
chr5	GH05I040831	40831939	40832088	0.54	[{'connected_gene': 'SNORD72', 'score': 550.77}, {'connected_gene': 'GC05M040833', 'score': 550.77}, {'connected_gene': 'RPL37', 'score': 0.77}, {'connected_gene': 'LOC100506548', 'score': 0.77}]
chr5	GH05I040404	40404202	40412170	1.46	[{'connected_gene': 'PTGER4', 'score': 31.66}, {'connected_gene': 'RPL37', 'score': 5.34}, {'connected_gene': 'CARD6', 'score': 4.06}, {'connected_gene': 'PRKAA1', 'score': 1.24}, {'connected_gene': 'GC05M039678', 'score': 0.44}, {'connected_gene': 'LOC105374736', 'score': 0.21}]
chr5	GH05I040381	40381181	40386799	1.37	[{'connected_gene': 'PTGER4', 'score': 22.54}, {'connected_gene': 'RPL37', 'score': 5.42}, {'connected_gene': 'CARD6', 'score': 1.33}, {'connected_gene': 'PRKAA1', 'score': 1.12}, {'connected_gene': 'GC05M039678', 'score': 0.29}, {'connected_gene': 'LOC105374736', 'score': 0.28}]
chr5	GH05I040391	40391680	40391886	0.51	[{'connected_gene': 'PTGER4', 'score': 17.33}, {'connected_gene': 'RPL37', 'score': 3.95}, {'connected_gene': 'CARD6', 'score': 2.95}, {'connected_gene': 'GC05M039678', 'score': 0.34}, {'connected_gene': 'LOC105374736', 'score': 0.25}]
chr5	GH05I040435	40435881	40438514	1.16	[{'connected_gene': 'PTGER4', 'score': 30.9}, {'connected_gene': 'RPL37', 'score': 4.08}, {'connected_gene': 'CARD6', 'score': 2.21}, {'connected_gene': 'ENSG00000283286', 'score': 0.34}, {'connected_gene': 'GC05P040507', 'score': 0.19}]
chr5	GH05I040413	40413248	40414497	0.74	[{'connected_gene': 'ENSG00000283286', 'score': 550.77}, {'connected_gene': 'GC05M039678', 'score': 550.77}, {'connected_gene': 'RPL37', 'score': 5.3}, {'connected_gene': 'LOC105374736', 'score': 0.2}]
chr5	GH05I040825	40825518	40825808	0.8	[{'connected_gene': 'PIR57920', 'score': 550.77}, {'connected_gene': 'PRKAA1', 'score': 21.15}, {'connected_gene': 'LOC100506548', 'score': 0.77}, {'connected_gene': 'GC05P040818', 'score': 0.44}, {'connected_gene': 'RPL37', 'score': 0.44}]