PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367459	[[192544856, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192547515], [192548266, 192549161]]	[[192544922, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192547515], [192548266, 192548452]]
ENST00000474373	[[192544892, 192545059], [192545903, 192546406]]	None
ENST00000462589	[[192544902, 192545059], [192545414, 192545896]]	None
ENST00000583155	[[192544902, 192545495], [192545903, 192545954]]	None
ENST00000469578	[[192544902, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192548085]]	[[192544922, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192547581]]
ENST00000498352	[[192544904, 192545059], [192545414, 192545495], [192545903, 192547515], [192548266, 192549071]]	None
NM_002922	[[192544856, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192547515], [192548266, 192549159]]	[[192544922, 192545059], [192545414, 192545495], [192545903, 192545965], [192547351, 192547515], [192548266, 192548452]]

Promoter

Chrom	Start	End	Description
chr1	192544895	192544912	CAGE_peak_1_at_RGS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I192639	192639116	192641080	1.11	[{'connected_gene': 'RGS13', 'score': 27.05}, {'connected_gene': 'RGS1', 'score': 2.95}, {'connected_gene': 'RGS2', 'score': 1.35}, {'connected_gene': 'RPS27AP5', 'score': 0.18}]
chr1	GH01I192866	192866311	192866553	0.22	[{'connected_gene': 'RGS13', 'score': 14.1}, {'connected_gene': 'RGS1', 'score': 1.68}, {'connected_gene': 'RN7SKP126', 'score': 0.44}, {'connected_gene': 'LOC105371667', 'score': 0.39}, {'connected_gene': 'GC01P192837', 'score': 0.31}]
chr1	GH01I192614	192614337	192614348	0.39	[{'connected_gene': 'RGS13', 'score': 11.41}, {'connected_gene': 'RGS1', 'score': 1.43}, {'connected_gene': 'LOC105371664', 'score': 0.39}, {'connected_gene': 'GC01P192596', 'score': 0.37}]
chr1	GH01I192805	192805951	192811795	2.52	[{'connected_gene': 'RGS2', 'score': 567.86}, {'connected_gene': 'ENSG00000231767', 'score': 10.08}, {'connected_gene': 'CDC73', 'score': 8.09}, {'connected_gene': 'RGS1', 'score': 5.3}, {'connected_gene': 'TROVE2', 'score': 2.28}, {'connected_gene': 'LOC100130137', 'score': 0.44}]
chr1	GH01I192877	192877401	192879687	0.98	[{'connected_gene': 'RGS2', 'score': 37.34}, {'connected_gene': 'RGS1', 'score': 10.11}, {'connected_gene': 'CDC73', 'score': 8.13}, {'connected_gene': 'TROVE2', 'score': 1.71}, {'connected_gene': 'RN7SKP126', 'score': 0.77}, {'connected_gene': 'GC01P192837', 'score': 0.26}, {'connected_gene': 'LINC01032', 'score': 0.2}]
chr1	GH01I192906	192906305	192909055	0.83	[{'connected_gene': 'RGS2', 'score': 17.76}, {'connected_gene': 'RGS1', 'score': 10.07}, {'connected_gene': 'CDC73', 'score': 5.02}, {'connected_gene': 'TROVE2', 'score': 2.31}, {'connected_gene': 'RN7SKP126', 'score': 0.29}, {'connected_gene': 'LINC01032', 'score': 0.26}, {'connected_gene': 'GC01P192837', 'score': 0.2}]
chr1	GH01I192945	192945507	192945642	0.28	[{'connected_gene': 'RGS1', 'score': 8.74}, {'connected_gene': 'CDC73', 'score': 3.55}, {'connected_gene': 'RGS2', 'score': 3.27}, {'connected_gene': 'TROVE2', 'score': 2.15}, {'connected_gene': 'LINC01032', 'score': 0.77}, {'connected_gene': 'RN7SKP126', 'score': 0.2}]
chr1	GH01I192580	192580483	192580765	1.21	[{'connected_gene': 'RGS1', 'score': 14.64}, {'connected_gene': 'LOC647150', 'score': 13.07}, {'connected_gene': 'TROVE2', 'score': 11.17}, {'connected_gene': 'CDC73', 'score': 10.03}, {'connected_gene': 'RGS2', 'score': 1.28}, {'connected_gene': 'GC01P192596', 'score': 0.37}, {'connected_gene': 'LOC105371664', 'score': 0.25}]
chr1	GH01I192608	192608734	192610052	1.55	[{'connected_gene': 'RGS1', 'score': 14.1}, {'connected_gene': 'RGS13', 'score': 11.38}, {'connected_gene': 'TROVE2', 'score': 2.16}, {'connected_gene': 'RGS2', 'score': 1.77}, {'connected_gene': 'GC01P192596', 'score': 0.39}, {'connected_gene': 'LOC105371664', 'score': 0.37}]
chr1	GH01I192488	192488620	192490797	1.1	[{'connected_gene': 'RGS1', 'score': 3.59}, {'connected_gene': 'RGS13', 'score': 1.68}, {'connected_gene': 'RGS2', 'score': 1.24}, {'connected_gene': 'ENSG00000236069', 'score': 0.28}, {'connected_gene': 'GC01P192448', 'score': 0.26}]
chr1	GH01I192902	192902845	192906224	1.01	[{'connected_gene': 'RGS1', 'score': 12.3}, {'connected_gene': 'RGS2', 'score': 12.24}, {'connected_gene': 'CDC73', 'score': 1.55}, {'connected_gene': 'TROVE2', 'score': 1.25}, {'connected_gene': 'RN7SKP126', 'score': 0.31}, {'connected_gene': 'LINC01032', 'score': 0.26}, {'connected_gene': 'GC01P192837', 'score': 0.2}]
chr1	GH01I192788	192788154	192788600	0.96	[{'connected_gene': 'RGS1', 'score': 8.01}, {'connected_gene': 'RGS2', 'score': 6.04}, {'connected_gene': 'CDC73', 'score': 1.66}, {'connected_gene': 'TROVE2', 'score': 1.65}, {'connected_gene': 'LOC105371665', 'score': 0.77}, {'connected_gene': 'MIR4426', 'score': 0.19}]
chr1	GH01I192789	192789966	192790181	0.48	[{'connected_gene': 'RGS1', 'score': 8.48}, {'connected_gene': 'RGS2', 'score': 1.61}, {'connected_gene': 'CDC73', 'score': 1.33}, {'connected_gene': 'TROVE2', 'score': 1.17}, {'connected_gene': 'LOC105371665', 'score': 0.77}, {'connected_gene': 'MIR4426', 'score': 0.19}]
chr1	GH01I192549	192549283	192551799	1.45	[{'connected_gene': 'RGS1', 'score': 22.27}, {'connected_gene': 'ENSG00000231767', 'score': 4.73}, {'connected_gene': 'RGS2', 'score': 1.15}, {'connected_gene': 'ENSG00000236069', 'score': 0.34}, {'connected_gene': 'LOC105371664', 'score': 0.18}]
chr1	GH01I192476	192476414	192477413	1.31	[{'connected_gene': 'RGS1', 'score': 24.58}, {'connected_gene': 'RGS2', 'score': 1.22}, {'connected_gene': 'GC01P192448', 'score': 0.31}, {'connected_gene': 'ENSG00000236069', 'score': 0.23}]
chr1	GH01I192605	192605050	192605364	1.23	[{'connected_gene': 'RGS1', 'score': 20.76}, {'connected_gene': 'LOC105371664', 'score': 11.29}, {'connected_gene': 'RGS13', 'score': 10.46}, {'connected_gene': 'TROVE2', 'score': 1.83}, {'connected_gene': 'RGS2', 'score': 1.77}, {'connected_gene': 'GC01P192596', 'score': 0.44}]
chr1	GH01I192512	192512419	192513001	1.21	[{'connected_gene': 'RGS1', 'score': 24.09}, {'connected_gene': 'LOC105371664', 'score': 11.41}, {'connected_gene': 'RGS2', 'score': 1.2}, {'connected_gene': 'ENSG00000236069', 'score': 0.37}, {'connected_gene': 'GC01P192448', 'score': 0.21}]
chr1	GH01I192521	192521749	192522014	0.8	[{'connected_gene': 'RGS1', 'score': 24.02}, {'connected_gene': 'LOC105371664', 'score': 11.47}, {'connected_gene': 'ENSG00000236069', 'score': 0.44}, {'connected_gene': 'GC01P192448', 'score': 0.19}]
chr1	GH01I192557	192557606	192561134	1.2	[{'connected_gene': 'RGS1', 'score': 17.3}, {'connected_gene': 'LOC105371664', 'score': 12.77}, {'connected_gene': 'ENSG00000231767', 'score': 4.81}, {'connected_gene': 'ENSG00000236069', 'score': 0.31}]
chr1	GH01I192506	192506609	192507795	0.65	[{'connected_gene': 'RGS1', 'score': 11.49}, {'connected_gene': 'LOC105371664', 'score': 11.28}, {'connected_gene': 'ENSG00000236069', 'score': 0.34}, {'connected_gene': 'GC01P192448', 'score': 0.22}]
chr1	GH01I192601	192600288	192600618	0.22	[{'connected_gene': 'RGS1', 'score': 14.6}, {'connected_gene': 'LOC105371664', 'score': 11.45}, {'connected_gene': 'GC01P192596', 'score': 0.77}]
chr1	GH01I192574	192574170	192574378	0.49	[{'connected_gene': 'RGS1', 'score': 562.27}, {'connected_gene': 'ENSG00000236069', 'score': 0.26}, {'connected_gene': 'LOC105371664', 'score': 0.23}]
chr1	GH01I192562	192561286	192561884	0.31	[{'connected_gene': 'RGS1', 'score': 17.37}, {'connected_gene': 'LOC105371664', 'score': 11.67}, {'connected_gene': 'ENSG00000236069', 'score': 0.29}]
chr1	GH01I192554	192554975	192555241	0.88	[{'connected_gene': 'RGS1', 'score': 16.22}, {'connected_gene': 'ENSG00000236069', 'score': 0.31}, {'connected_gene': 'LOC105371664', 'score': 0.19}]
chr1	GH01I192573	192573622	192573807	0.69	[{'connected_gene': 'RGS1', 'score': 14.37}, {'connected_gene': 'ENSG00000236069', 'score': 0.26}, {'connected_gene': 'LOC105371664', 'score': 0.22}]
chr1	GH01I192536	192536320	192536582	0.54	[{'connected_gene': 'RGS1', 'score': 13.41}, {'connected_gene': 'ENSG00000236069', 'score': 0.44}, {'connected_gene': 'LOC105371664', 'score': 0.16}]
chr1	GH01I192571	192571344	192572379	0.38	[{'connected_gene': 'RGS1', 'score': 19.05}, {'connected_gene': 'ENSG00000236069', 'score': 0.26}, {'connected_gene': 'LOC105371664', 'score': 0.22}]
chr1	GH01I192577	192577001	192579000	0.89	[{'connected_gene': 'RGS1', 'score': 0.77}, {'connected_gene': 'GC01P192596', 'score': 0.37}, {'connected_gene': 'LOC105371664', 'score': 0.23}]
chr1	GH01I192575	192575091	192576807	1.73	[{'connected_gene': 'RGS1', 'score': 567.64}, {'connected_gene': 'ENSG00000231767', 'score': 4.71}, {'connected_gene': 'GC01P192596', 'score': 0.34}, {'connected_gene': 'LOC105371664', 'score': 0.23}]
chr1	GH01I192600	192600845	192602325	0.54	[{'connected_gene': 'RGS1', 'score': 11.64}, {'connected_gene': 'LOC105371664', 'score': 10.68}, {'connected_gene': 'GC01P192596', 'score': 0.77}]
chr1	GH01I192544	192544306	192547197	1.44	[{'connected_gene': 'RGS1', 'score': 21.05}, {'connected_gene': 'LOC105371664', 'score': 12.86}, {'connected_gene': 'ENSG00000236069', 'score': 0.37}]
chr1	GH01I192561	192561978	192562956	0.31	[{'connected_gene': 'RGS1', 'score': 16.93}, {'connected_gene': 'ENSG00000236069', 'score': 0.29}, {'connected_gene': 'LOC105371664', 'score': 0.2}]
chr1	GH01I192569	192569627	192570566	0.38	[{'connected_gene': 'RGS1', 'score': 7.05}, {'connected_gene': 'ENSG00000231767', 'score': 4.72}, {'connected_gene': 'ENSG00000236069', 'score': 0.26}, {'connected_gene': 'LOC105371664', 'score': 0.22}]
chr1	GH01I192579	192579100	192579757	1.15	[{'connected_gene': 'RGS1', 'score': 0.77}, {'connected_gene': 'GC01P192596', 'score': 0.37}, {'connected_gene': 'LOC105371664', 'score': 0.25}]
chr1	GH01I192485	192485446	192486752	0.99	[{'connected_gene': 'RGS1', 'score': 10.73}, {'connected_gene': 'GC01P192448', 'score': 0.28}, {'connected_gene': 'ENSG00000236069', 'score': 0.26}]
chr1	GH01I192591	192591756	192593262	0.2	[{'connected_gene': 'LOC105371664', 'score': 10.95}, {'connected_gene': 'RGS13', 'score': 10.4}, {'connected_gene': 'GC01P192596', 'score': 0.77}, {'connected_gene': 'RGS1', 'score': 0.37}]
chr1	GH01I192628	192628457	192628657	0.41	[{'connected_gene': 'LOC105371664', 'score': 550.77}, {'connected_gene': 'RGS13', 'score': 12.26}, {'connected_gene': 'RGS1', 'score': 1.85}, {'connected_gene': 'GC01P192596', 'score': 0.29}]
chr1	GH01I192515	192515989	192518035	1.59	[{'connected_gene': 'LOC105371664', 'score': 30.67}, {'connected_gene': 'RGS1', 'score': 25.2}, {'connected_gene': 'RGS2', 'score': 1.22}, {'connected_gene': 'ENSG00000236069', 'score': 0.39}, {'connected_gene': 'GC01P192448', 'score': 0.2}]
chr1	GH01I192523	192523870	192524595	0.72	[{'connected_gene': 'LOC105371664', 'score': 11.84}, {'connected_gene': 'RGS1', 'score': 11.49}, {'connected_gene': 'ENSG00000236069', 'score': 0.44}, {'connected_gene': 'GC01P192448', 'score': 0.18}]
chr1	GH01I192509	192509261	192510925	0.31	[{'connected_gene': 'LOC105371664', 'score': 25.9}, {'connected_gene': 'RGS1', 'score': 11.88}, {'connected_gene': 'ENSG00000236069', 'score': 0.37}, {'connected_gene': 'GC01P192448', 'score': 0.21}]
chr1	GH01I192518	192518637	192518975	0.79	[{'connected_gene': 'LOC105371664', 'score': 30.14}, {'connected_gene': 'RGS1', 'score': 24.4}, {'connected_gene': 'ENSG00000236069', 'score': 0.39}, {'connected_gene': 'GC01P192448', 'score': 0.19}]
chr1	GH01I192519	192519302	192521142	0.46	[{'connected_gene': 'LOC105371664', 'score': 29.63}, {'connected_gene': 'RGS1', 'score': 17.92}, {'connected_gene': 'ENSG00000236069', 'score': 0.44}, {'connected_gene': 'GC01P192448', 'score': 0.19}]
chr1	GH01I192538	192538120	192541467	1.16	[{'connected_gene': 'LOC105371664', 'score': 24.85}, {'connected_gene': 'RGS1', 'score': 19.04}, {'connected_gene': 'ENSG00000236069', 'score': 0.39}]
chr1	GH01I192587	192587416	192588693	0.2	[{'connected_gene': 'LOC105371664', 'score': 11.07}, {'connected_gene': 'GC01P192596', 'score': 0.44}, {'connected_gene': 'RGS1', 'score': 0.39}]
chr1	GH01I192552	192552104	192553882	1.17	[{'connected_gene': 'LOC105371664', 'score': 14.04}, {'connected_gene': 'ENSG00000231767', 'score': 4.72}, {'connected_gene': 'RGS1', 'score': 4.44}, {'connected_gene': 'ENSG00000236069', 'score': 0.34}]
chr1	GH01I192533	192533349	192535663	0.2	[{'connected_gene': 'LOC105371664', 'score': 15.04}, {'connected_gene': 'ENSG00000236069', 'score': 0.77}, {'connected_gene': 'RGS1', 'score': 0.26}]
chr1	GH01I192589	192589177	192591207	0.38	[{'connected_gene': 'LOC105371664', 'score': 10.95}, {'connected_gene': 'GC01P192596', 'score': 0.44}, {'connected_gene': 'RGS1', 'score': 0.39}]
chr1	GH01I192593	192593543	192593750	0.44	[{'connected_gene': 'LOC105371664', 'score': 10.87}, {'connected_gene': 'RGS1', 'score': 5.93}, {'connected_gene': 'GC01P192596', 'score': 0.77}]
chr1	GH01I192951	192951338	192953145	1.16	[{'connected_gene': 'GC01P192950', 'score': 550.77}, {'connected_gene': 'RGS2', 'score': 19.35}, {'connected_gene': 'RGS1', 'score': 6.2}, {'connected_gene': 'CDC73', 'score': 5.84}, {'connected_gene': 'TROVE2', 'score': 2.57}, {'connected_gene': 'ZNF101P2', 'score': 0.26}]
chr1	GH01I192547	192547456	192548195	0.43	[{'connected_gene': 'ENSG00000236069', 'score': 0.37}, {'connected_gene': 'RGS1', 'score': 0.31}, {'connected_gene': 'LOC105371664', 'score': 0.18}]
chr1	GH01I192594	192594982	192596765	0.2	[{'connected_gene': 'GC01P192596', 'score': 550.77}, {'connected_gene': 'LOC105371664', 'score': 11.43}, {'connected_gene': 'RGS1', 'score': 11.32}, {'connected_gene': 'RGS13', 'score': 10.4}]
chr1	GH01I192527	192527165	192528330	0.38	[{'connected_gene': 'ENSG00000236069', 'score': 550.77}, {'connected_gene': 'LOC105371664', 'score': 17.42}, {'connected_gene': 'RGS1', 'score': 11.51}, {'connected_gene': 'GC01P192448', 'score': 0.18}]
chr1	GH01I192597	192597273	192599586	0.31	[{'connected_gene': 'GC01P192596', 'score': 550.77}, {'connected_gene': 'LOC105371664', 'score': 11.43}, {'connected_gene': 'RGS1', 'score': 11.32}]
chr1	GH01I192528	192528942	192531800	1.5	[{'connected_gene': 'ENSG00000236069', 'score': 550.77}, {'connected_gene': 'LOC105371664', 'score': 27.03}, {'connected_gene': 'RGS1', 'score': 23.56}]