PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000005257	[[39663081, 39663424], [39726229, 39726380], [39729980, 39730189], [39736283, 39736458], [39745721, 39747723]]	[[39726266, 39726380], [39729980, 39730189], [39736283, 39736458], [39745721, 39745844]]
ENST00000468201	[[39663163, 39663424], [39736283, 39736458], [39745721, 39745990]]	None
ENST00000436179	[[39663484, 39664026], [39726229, 39726380], [39729980, 39730169]]	[[39726266, 39726380], [39729980, 39730169]]
ENST00000434466	[[39726285, 39726380], [39729980, 39730189], [39736283, 39736458], [39737006, 39737109], [39745721, 39745907]]	[[39726285, 39726380], [39729980, 39730189], [39736283, 39736458], [39737006, 39737021]]
ENST00000466491	[[39740478, 39740618], [39745721, 39745901]]	None
NM_005402	[[39663151, 39663424], [39726229, 39726380], [39729980, 39730189], [39736283, 39736458], [39745721, 39747723]]	[[39726266, 39726380], [39729980, 39730189], [39736283, 39736458], [39745721, 39745844]]

Promoter

Chrom	Start	End	Description
chr7	39663061	39663072	CAGE_peak_6_at_RALA_5end
chr7	39663146	39663225	CAGE_peak_1_at_RALA_5end
chr7	39663255	39663276	CAGE_peak_3_at_RALA_5end
chr7	39663286	39663317	CAGE_peak_2_at_RALA_5end
chr7	39663534	39663558	CAGE_peak_5_at_RALA_5end
chr7	39663923	39663926	CAGE_peak_4_at_RALA_5end
chr7	39663958	39663960	CAGE_peak_9_at_RALA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I039591	39591984	39593864	1.34	[{'connected_gene': 'CDK13', 'score': 14.03}, {'connected_gene': 'MPLKIP', 'score': 12.37}, {'connected_gene': 'LINC00265', 'score': 9.78}, {'connected_gene': 'RALA', 'score': 8.87}, {'connected_gene': 'GC07P039582', 'score': 0.39}, {'connected_gene': 'GC07P039609', 'score': 0.37}, {'connected_gene': 'YAE1D1', 'score': 0.31}]
chr7	GH07I039742	39742087	39742858	0.85	[{'connected_gene': 'RALA', 'score': 11.89}, {'connected_gene': 'YAE1D1', 'score': 11.18}, {'connected_gene': 'LOC105375240', 'score': 11.18}, {'connected_gene': 'LINC00265', 'score': 10.67}, {'connected_gene': 'RNU6-719P', 'score': 0.31}]
chr7	GH07I039750	39750362	39750511	0.68	[{'connected_gene': 'RALA', 'score': 10.62}, {'connected_gene': 'YAE1D1', 'score': 9.92}, {'connected_gene': 'LOC105375240', 'score': 9.92}, {'connected_gene': 'LINC00265', 'score': 0.37}, {'connected_gene': 'RNU6-719P', 'score': 0.37}]
chr7	GH07I039751	39750545	39750980	0.68	[{'connected_gene': 'RALA', 'score': 10.62}, {'connected_gene': 'YAE1D1', 'score': 9.92}, {'connected_gene': 'LOC105375240', 'score': 9.92}, {'connected_gene': 'LINC00265', 'score': 0.37}, {'connected_gene': 'RNU6-719P', 'score': 0.37}]
chr7	GH07I039749	39749302	39749838	0.63	[{'connected_gene': 'RALA', 'score': 11.39}, {'connected_gene': 'YAE1D1', 'score': 11.04}, {'connected_gene': 'LOC105375240', 'score': 11.04}, {'connected_gene': 'LINC00265', 'score': 0.37}, {'connected_gene': 'RNU6-719P', 'score': 0.37}]
chr7	GH07I039745	39745649	39747449	0.95	[{'connected_gene': 'RALA', 'score': 11.69}, {'connected_gene': 'YAE1D1', 'score': 11.19}, {'connected_gene': 'LOC105375240', 'score': 11.19}, {'connected_gene': 'LINC00265', 'score': 6.95}, {'connected_gene': 'RNU6-719P', 'score': 0.34}]
chr7	GH07I039588	39588159	39591441	1.69	[{'connected_gene': 'RALA', 'score': 22.6}, {'connected_gene': 'YAE1D1', 'score': 11.64}, {'connected_gene': 'LOC105375240', 'score': 11.64}, {'connected_gene': 'LINC00265', 'score': 4.09}, {'connected_gene': 'GC07P039582', 'score': 0.44}, {'connected_gene': 'GC07P039609', 'score': 0.37}]
chr7	GH07I039727	39727401	39727600	0.2	[{'connected_gene': 'RALA', 'score': 11.8}, {'connected_gene': 'YAE1D1', 'score': 9.8}, {'connected_gene': 'LOC105375240', 'score': 9.8}, {'connected_gene': 'LINC00265', 'score': 0.44}, {'connected_gene': 'ENSG00000228554', 'score': 0.34}]
chr7	GH07I039723	39723582	39723731	0.2	[{'connected_gene': 'RALA', 'score': 10.72}, {'connected_gene': 'YAE1D1', 'score': 10.25}, {'connected_gene': 'LOC105375240', 'score': 10.25}, {'connected_gene': 'LINC00265', 'score': 0.44}, {'connected_gene': 'ENSG00000228554', 'score': 0.34}]
chr7	GH07I039708	39708897	39710724	0.66	[{'connected_gene': 'RALA', 'score': 11.23}, {'connected_gene': 'YAE1D1', 'score': 9.94}, {'connected_gene': 'LOC105375240', 'score': 9.94}, {'connected_gene': 'LINC00265', 'score': 7.22}, {'connected_gene': 'ENSG00000228554', 'score': 0.44}]
chr7	GH07I039604	39604128	39606671	0.9	[{'connected_gene': 'RALA', 'score': 12.1}, {'connected_gene': 'YAE1D1', 'score': 10.96}, {'connected_gene': 'LOC105375240', 'score': 10.96}, {'connected_gene': 'GC07P039609', 'score': 0.77}, {'connected_gene': 'GC07P039582', 'score': 0.34}]
chr7	GH07I039666	39666682	39666831	0.31	[{'connected_gene': 'RALA', 'score': 12.45}, {'connected_gene': 'ENSG00000231951', 'score': 12.35}, {'connected_gene': 'YAE1D1', 'score': 10.13}, {'connected_gene': 'LOC105375240', 'score': 10.13}, {'connected_gene': 'GC07M039668', 'score': 0.37}]
chr7	GH07I039682	39682318	39682517	0.2	[{'connected_gene': 'RALA', 'score': 12.21}, {'connected_gene': 'ENSG00000231951', 'score': 11.6}, {'connected_gene': 'YAE1D1', 'score': 10.49}, {'connected_gene': 'LOC105375240', 'score': 10.49}, {'connected_gene': 'GC07M039668', 'score': 0.77}]
chr7	GH07I039667	39667347	39667753	0.38	[{'connected_gene': 'RALA', 'score': 12.45}, {'connected_gene': 'ENSG00000231951', 'score': 12.35}, {'connected_gene': 'YAE1D1', 'score': 10.13}, {'connected_gene': 'LOC105375240', 'score': 10.13}, {'connected_gene': 'GC07M039668', 'score': 0.37}]
chr7	GH07I039580	39580201	39581000	1.11	[{'connected_gene': 'RALA', 'score': 11.85}, {'connected_gene': 'LINC00265', 'score': 5.25}, {'connected_gene': 'GC07P039582', 'score': 0.77}, {'connected_gene': 'LOC100101126', 'score': 0.39}, {'connected_gene': 'YAE1D1', 'score': 0.39}]
chr7	GH07I039620	39620339	39627104	2.44	[{'connected_gene': 'RALA', 'score': 550.77}, {'connected_gene': 'LINC00265', 'score': 20.58}, {'connected_gene': 'GC07M039668', 'score': 0.21}]
chr7	GH07I039632	39632915	39634708	0.92	[{'connected_gene': 'RALA', 'score': 0.39}, {'connected_gene': 'GC07M039668', 'score': 0.23}]
chr7	GH07I039633	39632082	39632197	0.2	[{'connected_gene': 'RALA', 'score': 0.44}, {'connected_gene': 'GC07M039668', 'score': 0.23}]
chr7	GH07I039565	39565514	39567409	2.04	[{'connected_gene': 'YAE1D1', 'score': 550.77}, {'connected_gene': 'LOC105375240', 'score': 550.77}, {'connected_gene': 'CDK13', 'score': 11.93}, {'connected_gene': 'MPLKIP', 'score': 11.16}, {'connected_gene': 'RALA', 'score': 10.88}, {'connected_gene': 'LINC00265', 'score': 5.66}, {'connected_gene': 'GC07M039569', 'score': 0.77}]
chr7	GH07I039602	39602392	39602619	0.27	[{'connected_gene': 'YAE1D1', 'score': 10.4}, {'connected_gene': 'LOC105375240', 'score': 10.4}, {'connected_gene': 'RALA', 'score': 4.39}, {'connected_gene': 'GC07P039609', 'score': 0.44}, {'connected_gene': 'GC07P039582', 'score': 0.37}]
chr7	GH07I039613	39613154	39614766	1.09	[{'connected_gene': 'YAE1D1', 'score': 10.28}, {'connected_gene': 'LOC105375240', 'score': 10.28}, {'connected_gene': 'RALA', 'score': 5.92}, {'connected_gene': 'GC07P039617', 'score': 0.77}, {'connected_gene': 'ENSG00000231951', 'score': 0.77}]
chr7	GH07I039698	39698962	39699111	0.2	[{'connected_gene': 'YAE1D1', 'score': 10.11}, {'connected_gene': 'LOC105375240', 'score': 10.11}, {'connected_gene': 'ENSG00000228554', 'score': 0.77}, {'connected_gene': 'GC07M039668', 'score': 0.39}, {'connected_gene': 'RALA', 'score': 0.18}]
chr7	GH07I039719	39719542	39722172	1.03	[{'connected_gene': 'LINC00265', 'score': 22.44}, {'connected_gene': 'CDK13', 'score': 11.95}, {'connected_gene': 'MPLKIP', 'score': 11.18}, {'connected_gene': 'RALA', 'score': 10.95}, {'connected_gene': 'YAE1D1', 'score': 10.25}, {'connected_gene': 'LOC105375240', 'score': 10.25}, {'connected_gene': 'ENSG00000228554', 'score': 0.37}]
chr7	GH07I039732	39732280	39736111	2	[{'connected_gene': 'LINC00265', 'score': 580.7}, {'connected_gene': 'CDK13', 'score': 37.02}, {'connected_gene': 'CICP22', 'score': 24.26}, {'connected_gene': 'ENSG00000228554', 'score': 19.91}, {'connected_gene': 'RALA', 'score': 13.95}, {'connected_gene': 'YAE1D1', 'score': 11.31}, {'connected_gene': 'LOC105375240', 'score': 11.31}, {'connected_gene': 'MPLKIP', 'score': 9.88}, {'connected_gene': 'RNU6-719P', 'score': 0.29}]
chr7	GH07I039594	39594507	39595969	0.69	[{'connected_gene': 'LINC00265', 'score': 14.36}, {'connected_gene': 'RALA', 'score': 5.11}, {'connected_gene': 'GC07P039582', 'score': 0.39}, {'connected_gene': 'GC07P039609', 'score': 0.39}, {'connected_gene': 'YAE1D1', 'score': 0.31}]
chr7	GH07I039753	39753787	39756026	0.76	[{'connected_gene': 'LINC00265', 'score': 16.67}, {'connected_gene': 'RALA', 'score': 10.69}, {'connected_gene': 'CICP22', 'score': 10.65}, {'connected_gene': 'YAE1D1', 'score': 10.61}, {'connected_gene': 'LOC105375240', 'score': 10.61}, {'connected_gene': 'CDK13', 'score': 10.42}, {'connected_gene': 'RNU6-719P', 'score': 0.39}]
chr7	GH07I039688	39688588	39689780	0.56	[{'connected_gene': 'LINC00265', 'score': 22.27}, {'connected_gene': 'ENSG00000228554', 'score': 5.43}, {'connected_gene': 'GC07M039668', 'score': 0.77}, {'connected_gene': 'RALA', 'score': 0.2}]
chr7	GH07I039650	39650414	39652259	0.69	[{'connected_gene': 'LINC00265', 'score': 20.45}, {'connected_gene': 'RALA', 'score': 12.1}, {'connected_gene': 'GC07M039668', 'score': 0.29}]
chr7	GH07I039627	39627582	39628479	1.18	[{'connected_gene': 'LINC00265', 'score': 5.73}, {'connected_gene': 'RALA', 'score': 0.44}, {'connected_gene': 'GC07M039668', 'score': 0.22}]
chr7	GH07I039607	39607098	39611630	1.45	[{'connected_gene': 'GC07P039609', 'score': 550.77}, {'connected_gene': 'LOC646999', 'score': 550.77}, {'connected_gene': 'ENSG00000106540', 'score': 550.77}, {'connected_gene': 'ENSG00000231951', 'score': 550.77}, {'connected_gene': 'YAE1D1', 'score': 10.95}, {'connected_gene': 'LOC105375240', 'score': 10.95}, {'connected_gene': 'RALA', 'score': 5.19}, {'connected_gene': 'GC07P039582', 'score': 0.31}]
chr7	GH07I039702	39702162	39702311	0.2	[{'connected_gene': 'ENSG00000228554', 'score': 550.77}, {'connected_gene': 'RALA', 'score': 12.17}, {'connected_gene': 'YAE1D1', 'score': 10.52}, {'connected_gene': 'LOC105375240', 'score': 10.52}, {'connected_gene': 'LINC00265', 'score': 7.61}, {'connected_gene': 'GC07M039668', 'score': 0.37}]
chr7	GH07I039683	39682801	39684600	0.51	[{'connected_gene': 'GC07M039668', 'score': 550.77}, {'connected_gene': 'RALA', 'score': 12.52}, {'connected_gene': 'ENSG00000231951', 'score': 11.6}, {'connected_gene': 'YAE1D1', 'score': 10.49}, {'connected_gene': 'LOC105375240', 'score': 10.49}, {'connected_gene': 'LINC00265', 'score': 10.37}]
chr7	GH07I039686	39686262	39686411	0.64	[{'connected_gene': 'GC07M039668', 'score': 550.77}, {'connected_gene': 'ENSG00000228554', 'score': 0.37}, {'connected_gene': 'RALA', 'score': 0.21}]
chr7	GH07I039616	39616229	39616456	0.68	[{'connected_gene': 'GC07P039617', 'score': 550.77}, {'connected_gene': 'RALA', 'score': 1.99}, {'connected_gene': 'ENSG00000231951', 'score': 0.44}]
chr7	GH07I039687	39686542	39686691	0.6	[{'connected_gene': 'GC07M039668', 'score': 550.77}, {'connected_gene': 'ENSG00000228554', 'score': 0.37}, {'connected_gene': 'RALA', 'score': 0.21}]