PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000419616	[[110045417, 110045590], [110045807, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068871]]	[[110045910, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068871]]
ENST00000358015	[[110045559, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110094475]]	[[110045910, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110091937]]
ENST00000416373	[[110046333, 110046468], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110092165]]	[[110064383, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110091937]]
ENST00000442587	[[110046975, 110047194], [110062421, 110062503], [110064315, 110064395], [110068659, 110068734]]	[[110047191, 110047194], [110062421, 110062503], [110064315, 110064395], [110068659, 110068734]]
ENST00000457811	[[110068822, 110068928], [110073962, 110074018], [110081032, 110081160], [110093949, 110094470]]	[[110068822, 110068928], [110073962, 110074018], [110081032, 110081160], [110093949, 110094003]]
NM_002874	[[110045516, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110094475]]	[[110045910, 110045976], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110091937]]
NM_001244724	[[110046333, 110046468], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110094475]]	[[110064383, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110091937]]
NM_001244713	[[110047049, 110047194], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110094475]]	[[110047191, 110047194], [110062421, 110062503], [110064315, 110064395], [110068659, 110068928], [110073962, 110074018], [110081032, 110081160], [110084263, 110084399], [110086170, 110086298], [110087114, 110087285], [110091823, 110091937]]

Promoter

Chrom	Start	End	Description
chr9	110045511	110045522	CAGE_peak_3_at_RAD23B_5end
chr9	110045537	110045572	CAGE_peak_1_at_RAD23B_5end
chr9	110045636	110045647	CAGE_peak_4_at_RAD23B_5end
chr9	110045834	110045905	CAGE_peak_2_at_RAD23B_5end
chr9	110046340	110046368	CAGE_peak_7_at_RAD23B_5end
chr9	110046373	110046405	CAGE_peak_6_at_RAD23B_5end
chr9	110047130	110047161	CAGE_peak_9_at_RAD23B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I107210	107210379	107215193	1.33	[{'connected_gene': 'KLF4', 'score': 6.43}, {'connected_gene': 'LOC644661', 'score': 0.26}, {'connected_gene': 'RAD23B', 'score': 0.19}]
chr9	GH09I107440	107440260	107440409	0.56	[{'connected_gene': 'KLF4', 'score': 11.29}, {'connected_gene': 'HMGN2P32', 'score': 0.37}, {'connected_gene': 'LINC01509', 'score': 0.31}, {'connected_gene': 'RAD23B', 'score': 0.1}]
chr9	GH09I107437	107437680	107439687	0.66	[{'connected_gene': 'KLF4', 'score': 11.29}, {'connected_gene': 'HMGN2P32', 'score': 0.37}, {'connected_gene': 'LINC01509', 'score': 0.31}, {'connected_gene': 'RAD23B', 'score': 0.1}]
chr9	GH09I107221	107221326	107223194	0.82	[{'connected_gene': 'LOC644661', 'score': 0.23}, {'connected_gene': 'RAD23B', 'score': 0.21}]
chr9	GH09I107177	107177942	107178870	0.38	[{'connected_gene': 'LOC644661', 'score': 7.3}, {'connected_gene': 'RAD23B', 'score': 0.15}]
chr9	GH09I107215	107215600	107215800	0.56	[{'connected_gene': 'LOC644661', 'score': 0.26}, {'connected_gene': 'RAD23B', 'score': 0.2}]
chr9	GH09I107174	107174101	107177772	0.83	[{'connected_gene': 'LOC644661', 'score': 8.07}, {'connected_gene': 'RAD23B', 'score': 5.8}]
chr9	GH09I107172	107172280	107172429	0.64	[{'connected_gene': 'LOC644661', 'score': 550.77}, {'connected_gene': 'RAD23B', 'score': 0.14}]
chr9	GH09I107190	107190660	107190809	0.31	[{'connected_gene': 'LOC644661', 'score': 0.37}, {'connected_gene': 'RAD23B', 'score': 0.16}]
chr9	GH09I107246	107246401	107246800	0.38	[{'connected_gene': 'RAD23B', 'score': 6.68}, {'connected_gene': 'LOC644661', 'score': 0.18}]
chr9	GH09I107248	107247907	107250525	1.13	[{'connected_gene': 'RAD23B', 'score': 0.29}, {'connected_gene': 'LOC644661', 'score': 0.18}]
chr9	GH09I107273	107273783	107278763	1.3	[{'connected_gene': 'RAD23B', 'score': 0.44}, {'connected_gene': 'LOC644661', 'score': 0.14}]
chr9	GH09I107242	107242615	107245789	1.15	[{'connected_gene': 'RAD23B', 'score': 4.71}, {'connected_gene': 'LOC644661', 'score': 0.19}]
chr9	GH09I107269	107269255	107270668	1.24	[{'connected_gene': 'RAD23B', 'score': 0.39}, {'connected_gene': 'LOC644661', 'score': 0.15}]
chr9	GH09I107250	107250785	107253010	1.11	[{'connected_gene': 'RAD23B', 'score': 5.67}, {'connected_gene': 'LOC644661', 'score': 0.18}]
chr9	GH09I107227	107227476	107228614	0.43	[{'connected_gene': 'RAD23B', 'score': 0.22}, {'connected_gene': 'LOC644661', 'score': 0.22}]
chr9	GH09I107239	107239620	107239769	0.52	[{'connected_gene': 'RAD23B', 'score': 0.26}, {'connected_gene': 'LOC644661', 'score': 0.2}]
chr9	GH09I107259	107259966	107261451	1.19	[{'connected_gene': 'RAD23B', 'score': 0.34}, {'connected_gene': 'LOC644661', 'score': 0.17}]
chr9	GH09I107247	107246980	107247129	0.38	[{'connected_gene': 'RAD23B', 'score': 0.28}, {'connected_gene': 'LOC644661', 'score': 0.18}]
chr9	GH09I107293	107293001	107295000	0.89	[{'connected_gene': 'RAD23B', 'score': 0.39}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107298	107298623	107301901	0.46	[{'connected_gene': 'RAD23B', 'score': 5.84}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107351	107351740	107351889	0.54	[{'connected_gene': 'RAD23B', 'score': 0.2}, {'connected_gene': 'HMGN2P32', 'score': 0.14}]
chr9	GH09I107288	107288089	107289373	0.62	[{'connected_gene': 'RAD23B', 'score': 0.44}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107289	107289801	107290000	0.51	[{'connected_gene': 'RAD23B', 'score': 0.44}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107368	107368120	107369609	0.96	[{'connected_gene': 'RAD23B', 'score': 0.17}, {'connected_gene': 'HMGN2P32', 'score': 0.17}]
chr9	GH09I107303	107303400	107305413	0.2	[{'connected_gene': 'RAD23B', 'score': 6.53}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107336	107336673	107338884	0.59	[{'connected_gene': 'RAD23B', 'score': 8.0}, {'connected_gene': 'HMGN2P32', 'score': 0.13}]
chr9	GH09I107309	107309420	107309569	0.67	[{'connected_gene': 'RAD23B', 'score': 0.31}, {'connected_gene': 'HMGN2P32', 'score': 0.11}]
chr9	GH09I107280	107280029	107286644	2.49	[{'connected_gene': 'RAD23B', 'score': 559.25}, {'connected_gene': 'HMGN2P32', 'score': 0.09}]
chr9	GH09I107363	107363579	107363952	0.38	[{'connected_gene': 'RAD23B', 'score': 0.18}, {'connected_gene': 'HMGN2P32', 'score': 0.16}]
chr9	GH09I107295	107295062	107296815	0.6	[{'connected_gene': 'RAD23B', 'score': 0.39}, {'connected_gene': 'HMGN2P32', 'score': 0.1}]
chr9	GH09I107340	107340481	107341889	1.06	[{'connected_gene': 'RAD23B', 'score': 0.22}, {'connected_gene': 'HMGN2P32', 'score': 0.13}]
chr9	GH09I107317	107317220	107317369	0.49	[{'connected_gene': 'RAD23B', 'score': 0.29}, {'connected_gene': 'HMGN2P32', 'score': 0.11}]
chr9	GH09I107386	107386223	107387189	0.31	[{'connected_gene': 'HMGN2P32', 'score': 0.19}, {'connected_gene': 'RAD23B', 'score': 0.15}]
chr9	GH09I107411	107411320	107411370	0.2	[{'connected_gene': 'HMGN2P32', 'score': 0.25}, {'connected_gene': 'RAD23B', 'score': 0.13}]
chr9	GH09I107412	107412680	107412829	0.57	[{'connected_gene': 'HMGN2P32', 'score': 0.25}, {'connected_gene': 'RAD23B', 'score': 0.13}]
chr9	GH09I107387	107387363	107387959	0.2	[{'connected_gene': 'HMGN2P32', 'score': 0.19}, {'connected_gene': 'RAD23B', 'score': 0.15}]
chr9	GH09I107403	107403485	107404869	0.49	[{'connected_gene': 'HMGN2P32', 'score': 0.23}, {'connected_gene': 'RAD23B', 'score': 0.13}]
chr9	GH09I107388	107388901	107391209	0.8	[{'connected_gene': 'HMGN2P32', 'score': 0.2}, {'connected_gene': 'RAD23B', 'score': 0.14}]
chr9	GH09I107409	107409168	107410828	0.2	[{'connected_gene': 'HMGN2P32', 'score': 0.25}, {'connected_gene': 'RAD23B', 'score': 0.13}]
chr9	GH09I107424	107424771	107425992	1.06	[{'connected_gene': 'HMGN2P32', 'score': 0.29}, {'connected_gene': 'LINC01509', 'score': 0.26}, {'connected_gene': 'RAD23B', 'score': 0.11}]
chr9	GH09I107432	107432840	107432989	0.46	[{'connected_gene': 'HMGN2P32', 'score': 0.31}, {'connected_gene': 'LINC01509', 'score': 0.29}, {'connected_gene': 'RAD23B', 'score': 0.11}]
chr9	GH09I107447	107447980	107448129	0.46	[{'connected_gene': 'HMGN2P32', 'score': 0.39}, {'connected_gene': 'LINC01509', 'score': 0.37}, {'connected_gene': 'RAD23B', 'score': 0.1}]
chr9	GH09I107422	107422200	107422601	0.97	[{'connected_gene': 'HMGN2P32', 'score': 0.28}, {'connected_gene': 'LINC01509', 'score': 0.26}, {'connected_gene': 'RAD23B', 'score': 0.12}]