PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371655	[[52373627, 52385786], [52398989, 52399114], [52402965, 52403084], [52442561, 52442789], [52456223, 52456436]]	[[52385598, 52385786], [52398989, 52399114], [52402965, 52403084], [52442561, 52442789]]
NM_002867	[[52373627, 52385786], [52398989, 52399114], [52402965, 52403084], [52442561, 52442789], [52456223, 52456436]]	[[52385598, 52385786], [52398989, 52399114], [52402965, 52403084], [52442561, 52442789]]

Promoter

Chrom	Start	End	Description
chr1	52442908	52442917	CAGE_peak_9_at_RAB3B_5end
chr1	52456266	52456290	CAGE_peak_2_at_RAB3B_5end
chr1	52456295	52456310	CAGE_peak_3_at_RAB3B_5end
chr1	52456352	52456418	CAGE_peak_1_at_RAB3B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I051928	51928272	51929394	0.31	[{'connected_gene': 'RAB3B', 'score': 11.69}, {'connected_gene': 'CC2D1B', 'score': 5.73}, {'connected_gene': 'GC01P051906', 'score': 0.34}, {'connected_gene': 'GC01P051974', 'score': 0.26}]
chr1	GH01I051923	51923946	51925634	0.74	[{'connected_gene': 'RAB3B', 'score': 10.94}, {'connected_gene': 'ENSG00000223390', 'score': 10.36}, {'connected_gene': 'KTI12', 'score': 10.36}, {'connected_gene': 'RPS13P2', 'score': 10.27}, {'connected_gene': 'ENSG00000230953', 'score': 10.21}, {'connected_gene': 'NRDC', 'score': 7.91}, {'connected_gene': 'GC01P051906', 'score': 0.37}, {'connected_gene': 'GC01P051974', 'score': 0.25}]
chr1	GH01I051927	51927129	51927278	0.4	[{'connected_gene': 'RAB3B', 'score': 11.69}, {'connected_gene': 'GC01P051906', 'score': 0.34}, {'connected_gene': 'GC01P051974', 'score': 0.25}]
chr1	GH01I051940	51940416	51943018	0.31	[{'connected_gene': 'ZCCHC11', 'score': 17.83}, {'connected_gene': 'RAB3B', 'score': 17.79}, {'connected_gene': 'NRDC', 'score': 16.58}, {'connected_gene': 'PRPF38A', 'score': 12.45}, {'connected_gene': 'ENSG00000272100', 'score': 11.98}, {'connected_gene': 'ECHDC2', 'score': 10.04}, {'connected_gene': 'CC2D1B', 'score': 5.73}, {'connected_gene': 'LOC100190934', 'score': 4.98}, {'connected_gene': 'GC01P051974', 'score': 0.29}, {'connected_gene': 'GC01P051906', 'score': 0.28}]
chr1	GH01I051945	51945464	51947051	0.31	[{'connected_gene': 'ZCCHC11', 'score': 6.57}, {'connected_gene': 'LOC100190934', 'score': 4.69}, {'connected_gene': 'GC01P051974', 'score': 0.31}, {'connected_gene': 'GC01P051906', 'score': 0.28}, {'connected_gene': 'RAB3B', 'score': 0.26}]
chr1	GH01I051973	51973749	51973878	0.88	[{'connected_gene': 'RNA5SP48', 'score': 550.77}, {'connected_gene': 'GC01P051974', 'score': 550.77}, {'connected_gene': 'RPS26P14', 'score': 0.44}, {'connected_gene': 'RAB3B', 'score': 0.37}]
chr1	GH01I051968	51968526	51971768	1.28	[{'connected_gene': 'LOC100190934', 'score': 8.66}, {'connected_gene': 'CC2D1B', 'score': 4.8}, {'connected_gene': 'GC01P051974', 'score': 0.77}, {'connected_gene': 'RAB3B', 'score': 0.34}, {'connected_gene': 'GC01P051906', 'score': 0.21}]
chr1	GH01I051989	51989800	51990895	1.78	[{'connected_gene': 'GC01M051989', 'score': 550.77}, {'connected_gene': 'RAB3B', 'score': 550.77}, {'connected_gene': 'GC01M051988', 'score': 0.77}, {'connected_gene': 'GC01P051981', 'score': 0.44}]
chr1	GH01I051990	51990909	51991058	0.66	[{'connected_gene': 'GC01M051989', 'score': 550.77}, {'connected_gene': 'RAB3B', 'score': 550.77}, {'connected_gene': 'GC01M051988', 'score': 0.77}]
chr1	GH01I051956	51956006	51956058	0.66	[{'connected_gene': 'GC01P051974', 'score': 0.37}, {'connected_gene': 'RAB3B', 'score': 0.29}, {'connected_gene': 'GC01P051906', 'score': 0.25}]
chr1	GH01I051957	51957709	51957878	0.8	[{'connected_gene': 'GC01P051974', 'score': 0.37}, {'connected_gene': 'RAB3B', 'score': 0.29}, {'connected_gene': 'GC01P051906', 'score': 0.23}]
chr1	GH01I051963	51963549	51964404	1.04	[{'connected_gene': 'GC01P051974', 'score': 0.44}, {'connected_gene': 'RAB3B', 'score': 0.31}, {'connected_gene': 'GC01P051906', 'score': 0.22}]
chr1	GH01I051896	51896830	51900233	0.96	[{'connected_gene': 'ENSG00000266993', 'score': 12.68}, {'connected_gene': 'ZCCHC11', 'score': 11.21}, {'connected_gene': 'RAB3B', 'score': 6.46}, {'connected_gene': 'CC2D1B', 'score': 4.91}, {'connected_gene': 'GC01P051906', 'score': 0.44}, {'connected_gene': 'NRDC', 'score': 0.37}]
chr1	GH01I052208	52208568	52211540	0.2	[{'connected_gene': 'PIR48588', 'score': 550.77}, {'connected_gene': 'CC2D1B', 'score': 23.55}, {'connected_gene': 'RAB3B', 'score': 10.51}, {'connected_gene': 'GC01P052251', 'score': 0.26}, {'connected_gene': 'ZFYVE9', 'score': 0.2}]
chr1	GH01I051980	51980777	51980836	0.5	[{'connected_gene': 'GC01P051981', 'score': 550.77}, {'connected_gene': 'RPS26P14', 'score': 550.77}, {'connected_gene': 'RAB3B', 'score': 550.44}]