PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261336	[[9301435, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9316263, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9354967], [9355120, 9355280], [9356363, 9356547], [9360854, 9360966]]	[[9301567, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9316263, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9354967], [9355120, 9355280], [9356363, 9356547], [9360854, 9360937]]
ENST00000381997	[[9301436, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9355001]]	[[9301567, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9355001]]
ENST00000535230	[[9301527, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9355280], [9356363, 9356547], [9360854, 9360961]]	[[9355112, 9355280], [9356363, 9356547], [9360854, 9360937]]
ENST00000539983	[[9313028, 9313086], [9313628, 9313712], [9314876, 9315040], [9315192, 9315244], [9316263, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9319576, 9320093]]	None
ENST00000546197	[[9313628, 9313712], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9322377, 9322693]]	None
ENST00000540995	[[9316312, 9316385], [9317734, 9317963], [9318647, 9318795], [9320096, 9320129]]	None
ENST00000543108	[[9316343, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9320096, 9320127]]	None
ENST00000546116	[[9321051, 9321570], [9322025, 9322187], [9322644, 9322714]]	None
NM_002864	[[9301435, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9316263, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9354967], [9355120, 9355280], [9356363, 9356547], [9360854, 9360966]]	[[9301567, 9301590], [9302156, 9302198], [9303239, 9303342], [9304199, 9304268], [9304815, 9304906], [9305419, 9305547], [9305720, 9305939], [9307211, 9307435], [9309770, 9309951], [9310362, 9310437], [9311015, 9311172], [9312533, 9312621], [9312909, 9313086], [9313628, 9313712], [9315192, 9315244], [9316263, 9316385], [9316728, 9316855], [9317734, 9317963], [9318647, 9318798], [9321464, 9321570], [9322025, 9322187], [9333578, 9333728], [9334570, 9334713], [9344788, 9344852], [9345107, 9345335], [9346672, 9346834], [9348925, 9349035], [9349166, 9349281], [9349607, 9349719], [9352959, 9353044], [9353487, 9353656], [9353922, 9353943], [9354914, 9354967], [9355120, 9355280], [9356363, 9356547], [9360854, 9360937]]

Promoter

Chrom	Start	End	Description
chr12	9360984	9360996	CAGE_peak_1_at_PZP_5end
chr12	9360997	9361006	CAGE_peak_2_at_PZP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I009756	9756259	9766298	2.69	[{'connected_gene': 'CD69', 'score': 576.83}, {'connected_gene': 'CLECL1', 'score': 22.54}, {'connected_gene': 'KLRF1', 'score': 17.17}, {'connected_gene': 'CLEC7A', 'score': 15.09}, {'connected_gene': 'OLR1', 'score': 10.55}, {'connected_gene': 'KLRB1', 'score': 8.76}, {'connected_gene': 'CLEC12A', 'score': 8.02}, {'connected_gene': 'ENSG00000213443', 'score': 6.47}, {'connected_gene': 'DDX12P', 'score': 5.72}, {'connected_gene': 'PZP', 'score': 5.15}, {'connected_gene': 'CLEC2B', 'score': 5.09}, {'connected_gene': 'KLRF2', 'score': 4.52}, {'connected_gene': 'GABARAPL1', 'score': 3.49}, {'connected_gene': 'CLEC2D', 'score': 2.99}, {'connected_gene': 'LOC105369653', 'score': 0.44}]
chr12	GH12I009244	9244305	9244454	0.65	[{'connected_gene': 'LOC642846', 'score': 21.57}, {'connected_gene': 'PZP', 'score': 11.15}, {'connected_gene': 'LOC728715', 'score': 5.23}, {'connected_gene': 'PTMAP4', 'score': 0.77}, {'connected_gene': 'ENSG00000256427', 'score': 0.77}, {'connected_gene': 'A2MP1', 'score': 0.29}]
chr12	GH12I009118	9118225	9118494	0.56	[{'connected_gene': 'PZP', 'score': 10.13}, {'connected_gene': 'A2M', 'score': 0.77}, {'connected_gene': 'GC12M009115', 'score': 0.77}]
chr12	GH12I009208	9208385	9208444	0.61	[{'connected_gene': 'PZP', 'score': 550.77}, {'connected_gene': 'GC12P009200', 'score': 0.44}, {'connected_gene': 'MIR1244-3', 'score': 0.29}]
chr12	GH12I009123	9123485	9124000	0.58	[{'connected_gene': 'PZP', 'score': 19.93}, {'connected_gene': 'KRT17P8', 'score': 0.77}, {'connected_gene': 'GC12M009115', 'score': 0.77}]
chr12	GH12I009144	9144765	9144914	0.54	[{'connected_gene': 'PZP', 'score': 10.36}, {'connected_gene': 'GC12M009133', 'score': 0.44}, {'connected_gene': 'GC12M009156', 'score': 0.39}]
chr12	GH12I009240	9240000	9240801	0.88	[{'connected_gene': 'PTMAP4', 'score': 550.77}, {'connected_gene': 'MIR1244-3', 'score': 550.77}, {'connected_gene': 'LINC00987', 'score': 550.77}, {'connected_gene': 'DDX12P', 'score': 15.6}, {'connected_gene': 'PZP', 'score': 11.17}, {'connected_gene': 'LOC642846', 'score': 7.96}, {'connected_gene': 'A2MP1', 'score': 0.28}]
chr12	GH12I009113	9113800	9118143	1.93	[{'connected_gene': 'A2M', 'score': 567.8}, {'connected_gene': 'KLRG1', 'score': 12.1}, {'connected_gene': 'PZP', 'score': 10.13}, {'connected_gene': 'GC12M009115', 'score': 0.77}, {'connected_gene': 'GC12M009066', 'score': 0.26}]
chr12	GH12I009156	9156336	9156722	0.22	[{'connected_gene': 'TPT1P12', 'score': 550.77}, {'connected_gene': 'GC12M009156', 'score': 550.77}, {'connected_gene': 'BTG1P1', 'score': 12.23}, {'connected_gene': 'KRT17P8', 'score': 12.21}, {'connected_gene': 'A2M', 'score': 10.67}, {'connected_gene': 'PZP', 'score': 2.26}, {'connected_gene': 'KLRB1', 'score': 2.01}, {'connected_gene': 'KLRG1', 'score': 1.7}, {'connected_gene': 'M6PR', 'score': 1.63}, {'connected_gene': 'PIR34456', 'score': 0.44}]
chr12	GH12I009134	9134664	9135586	0.74	[{'connected_gene': 'BTG1P1', 'score': 550.77}, {'connected_gene': 'PZP', 'score': 6.25}, {'connected_gene': 'GC12M009133', 'score': 0.77}]
chr12	GH12I009170	9170305	9170434	0.31	[{'connected_gene': 'BTG1P1', 'score': 11.0}, {'connected_gene': 'KRT17P8', 'score': 10.99}, {'connected_gene': 'KLRB1', 'score': 9.02}, {'connected_gene': 'KLRG1', 'score': 6.08}, {'connected_gene': 'GC12P009166', 'score': 0.77}, {'connected_gene': 'GC12P009191', 'score': 0.34}, {'connected_gene': 'PZP', 'score': 0.28}]