PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000396526	[[35030299, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099315]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074845]]
ENST00000396534	[[35030617, 35031035], [35031098, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099315]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074845]]
ENST00000362031	[[35031614, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099389]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099358]]
ENST00000556162	[[35031865, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35073340, 35073474], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099156], [35099316, 35099364]]	[[35078935, 35078948], [35099112, 35099156], [35099316, 35099358]]
ENST00000355110	[[35031865, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35073340, 35073474], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099156], [35099316, 35099364]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35073340, 35073396]]
ENST00000555416	[[35037097, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35073340, 35073474], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099360]]	[[35073392, 35073474], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099358]]
ENST00000555541	[[35044796, 35045048], [35055435, 35055522]]	None
ENST00000556712	[[35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35073340, 35073380], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099339]]	[[35072674, 35072677], [35073340, 35073380], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099339]]
ENST00000557265	[[35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35078843, 35078948], [35099112, 35099160], [35099316, 35099364]]	[[35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35078843, 35078948], [35099112, 35099160], [35099316, 35099358]]
ENST00000557341	[[35072570, 35072677], [35073340, 35073474], [35074801, 35074923], [35078843, 35078948], [35099112, 35099160], [35099316, 35099359]]	[[35073392, 35073474], [35074801, 35074923], [35078843, 35078948], [35099112, 35099160]]
ENST00000556303	[[35074692, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099360]]	None
ENST00000555648	[[35074887, 35074923], [35077235, 35077346], [35078843, 35078948], [35098663, 35098878]]	[[35074887, 35074923], [35077235, 35077346], [35078843, 35078948], [35098663, 35098807]]
NM_021249	[[35030298, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099389]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074845]]
NM_152233	[[35030298, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099389]]	[[35032327, 35032381], [35036891, 35036977], [35037059, 35037219], [35044961, 35045048], [35050766, 35050806], [35055435, 35055511], [35062250, 35062356], [35066755, 35066851], [35072553, 35072677], [35074801, 35074923], [35077235, 35077346], [35078843, 35078948], [35099112, 35099160], [35099316, 35099358]]

Promoter

Chrom	Start	End	Description
chr14	35099317	35099369	CAGE_peak_1_at_SNX6_5end
chr14	35099377	35099388	CAGE_peak_2_at_SNX6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I034495	34495743	34499200	1.23	[{'connected_gene': 'RPS19P3', 'score': 10.2}, {'connected_gene': 'SNX6', 'score': 7.69}, {'connected_gene': 'SPTSSA', 'score': 7.49}, {'connected_gene': 'KIAA0391', 'score': 4.46}, {'connected_gene': 'RPL23AP71', 'score': 0.39}, {'connected_gene': 'EAPP', 'score': 0.26}]
chr14	GH14I034567	34567991	34570728	0.31	[{'connected_gene': 'RPS19P3', 'score': 561.1}, {'connected_gene': 'EAPP', 'score': 13.68}, {'connected_gene': 'SNX6', 'score': 8.53}]
chr14	GH14I034623	34623263	34624210	0.38	[{'connected_gene': 'SNX6', 'score': 0.44}, {'connected_gene': 'RPS19P3', 'score': 0.23}]
chr14	GH14I034621	34621605	34621701	0.23	[{'connected_gene': 'SNX6', 'score': 0.44}, {'connected_gene': 'RPS19P3', 'score': 0.23}]
chr14	GH14I034685	34685652	34686835	0.74	[{'connected_gene': 'SNX6', 'score': 4.89}, {'connected_gene': 'RPL23AP8', 'score': 0.44}, {'connected_gene': 'RNU6-1261P', 'score': 0.39}]
chr14	GH14I034628	34628407	34630977	1.97	[{'connected_gene': 'SNX6', 'score': 558.23}, {'connected_gene': 'EAPP', 'score': 10.99}, {'connected_gene': 'RPS19P3', 'score': 0.21}]
chr14	GH14I034855	34855942	34858432	1.1	[{'connected_gene': 'SNX6', 'score': 10.6}, {'connected_gene': 'FAM177A1', 'score': 10.07}, {'connected_gene': 'RPL23AP8', 'score': 8.31}, {'connected_gene': 'BAZ1A', 'score': 7.55}, {'connected_gene': 'KIAA0391', 'score': 5.07}, {'connected_gene': 'RALGAPA1', 'score': 4.26}, {'connected_gene': 'PPP2R3C', 'score': 1.87}, {'connected_gene': 'PSMA6', 'score': 1.23}, {'connected_gene': 'RNU7-41P', 'score': 0.39}, {'connected_gene': 'ENSG00000258738', 'score': 0.37}]
chr14	GH14I034860	34860957	34862506	0.31	[{'connected_gene': 'SNX6', 'score': 10.6}, {'connected_gene': 'FAM177A1', 'score': 9.23}, {'connected_gene': 'ENSG00000258738', 'score': 7.63}, {'connected_gene': 'IGBP1P1', 'score': 5.94}, {'connected_gene': 'BAZ1A', 'score': 0.39}, {'connected_gene': 'RNU7-41P', 'score': 0.37}]
chr14	GH14I034578	34578936	34582164	0.31	[{'connected_gene': 'SNX6', 'score': 19.72}, {'connected_gene': 'RNU1-27P', 'score': 12.87}, {'connected_gene': 'EAPP', 'score': 12.84}, {'connected_gene': 'SPTSSA', 'score': 9.25}, {'connected_gene': 'RPS19P3', 'score': 0.39}]
chr14	GH14I034604	34604801	34606000	1.08	[{'connected_gene': 'SNX6', 'score': 571.75}, {'connected_gene': 'RNU1-27P', 'score': 11.26}, {'connected_gene': 'EAPP', 'score': 11.24}, {'connected_gene': 'CFL2', 'score': 10.65}, {'connected_gene': 'RPS19P3', 'score': 0.28}]
chr14	GH14I034677	34677423	34678904	1.25	[{'connected_gene': 'SNX6', 'score': 5.17}, {'connected_gene': 'CFL2', 'score': 4.83}, {'connected_gene': 'EAPP', 'score': 4.63}, {'connected_gene': 'RNU6-1261P', 'score': 0.77}, {'connected_gene': 'RPL23AP8', 'score': 0.37}]
chr14	GH14I034665	34665062	34667200	0.84	[{'connected_gene': 'SNX6', 'score': 6.47}, {'connected_gene': 'RNU6-1261P', 'score': 0.44}, {'connected_gene': 'ENSG00000275978', 'score': 0.44}]
chr14	GH14I034560	34560564	34562766	0.46	[{'connected_gene': 'SNX6', 'score': 6.82}, {'connected_gene': 'LOC105370449', 'score': 0.77}, {'connected_gene': 'ENSG00000259135', 'score': 0.77}, {'connected_gene': 'RPS19P3', 'score': 0.44}]
chr14	GH14I034639	34639575	34639724	0.46	[{'connected_gene': 'SNX6', 'score': 6.57}, {'connected_gene': 'ENSG00000275978', 'score': 0.34}]
chr14	GH14I034632	34632507	34632703	0.31	[{'connected_gene': 'SNX6', 'score': 8.07}, {'connected_gene': 'ENSG00000275978', 'score': 0.31}]
chr14	GH14I034615	34615327	34615591	0.22	[{'connected_gene': 'EAPP', 'score': 1.36}, {'connected_gene': 'SNX6', 'score': 0.39}, {'connected_gene': 'RPS19P3', 'score': 0.25}]
chr14	GH14I034553	34553795	34555319	0.85	[{'connected_gene': 'RNU1-28P', 'score': 550.77}, {'connected_gene': 'EAPP', 'score': 13.76}, {'connected_gene': 'RPS19P3', 'score': 10.73}, {'connected_gene': 'SNX6', 'score': 4.95}, {'connected_gene': 'LOC105370449', 'score': 0.77}, {'connected_gene': 'GC14P034547', 'score': 0.44}]
chr14	GH14I034520	34520037	34521432	0.46	[{'connected_gene': 'RNU1-27P', 'score': 12.23}, {'connected_gene': 'RNU1-28P', 'score': 12.09}, {'connected_gene': 'RPS19P3', 'score': 12.06}, {'connected_gene': 'SNX6', 'score': 5.38}, {'connected_gene': 'EAPP', 'score': 0.37}, {'connected_gene': 'RPL23AP71', 'score': 0.29}]
chr14	GH14I034505	34505364	34506671	0.72	[{'connected_gene': 'SPTSSA', 'score': 7.23}, {'connected_gene': 'SNX6', 'score': 4.89}, {'connected_gene': 'RPL23AP71', 'score': 0.34}, {'connected_gene': 'EAPP', 'score': 0.29}]
chr14	GH14I034648	34648042	34652332	1.23	[{'connected_gene': 'CFL2', 'score': 10.77}, {'connected_gene': 'RNU1-27P', 'score': 10.32}, {'connected_gene': 'EAPP', 'score': 10.31}, {'connected_gene': 'SNX6', 'score': 4.74}, {'connected_gene': 'ENSG00000275978', 'score': 0.44}]
chr14	GH14I034536	34536701	34540767	2.27	[{'connected_gene': 'LOC105370447', 'score': 550.77}, {'connected_gene': 'EAPP', 'score': 550.77}, {'connected_gene': 'SNX6', 'score': 9.11}, {'connected_gene': 'RPL23AP71', 'score': 0.23}]
chr14	GH14I034547	34547799	34548209	0.58	[{'connected_gene': 'GC14P034547', 'score': 550.77}, {'connected_gene': 'ENSG00000259002', 'score': 550.77}, {'connected_gene': 'RNU1-27P', 'score': 550.77}, {'connected_gene': 'SNX6', 'score': 8.82}, {'connected_gene': 'RNU1-28P', 'score': 0.44}]
chr14	GH14I034548	34548401	34548800	0.89	[{'connected_gene': 'GC14P034547', 'score': 550.77}, {'connected_gene': 'RNU1-27P', 'score': 550.77}, {'connected_gene': 'SNX6', 'score': 6.11}, {'connected_gene': 'RNU1-28P', 'score': 0.44}]