PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368124	[[159141398, 159141643], [159159560, 159159662], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159171802]]	[[159141555, 159141643], [159159560, 159159662], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159170712]]
ENST00000368125	[[159141398, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159173103]]	[[159141555, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159170712]]
ENST00000416746	[[159141548, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163692], [159166153, 159166244], [159166680, 159166740]]	[[159141555, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163692], [159166153, 159166244], [159166680, 159166740]]
ENST00000497636	[[159166631, 159166850], [159169540, 159169666], [159170593, 159171118]]	None
NM_001127173	[[159141353, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159173103]]	[[159141555, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159170712]]
NM_021189	[[159141353, 159141643], [159159560, 159159662], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159173103]]	[[159141555, 159141643], [159159560, 159159662], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163830], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159170712]]
NM_001346510	[[159141548, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163692], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159173103]]	[[159141555, 159141643], [159161725, 159161866], [159162367, 159162520], [159163212, 159163350], [159163659, 159163692], [159166153, 159166244], [159166680, 159166850], [159169540, 159169666], [159170593, 159170712]]

Promoter

Chrom	Start	End	Description
chr1	159141397	159141412	CAGE_peak_1_at_CADM3_5end
chr1	159166704	159166717	CAGE_peak_5_at_CADM3_5end
chr1	159166772	159166798	CAGE_peak_2_at_CADM3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I159160	159160931	159162079	0.96	[{'connected_gene': 'AIM2', 'score': 5.03}, {'connected_gene': 'CADM3', 'score': 0.39}]
chr1	GH01I159211	159211201	159211600	0.67	[{'connected_gene': 'CADM3', 'score': 11.29}, {'connected_gene': 'AIM2', 'score': 11.08}, {'connected_gene': 'OR10J2P', 'score': 9.78}, {'connected_gene': 'FCER1A', 'score': 9.77}, {'connected_gene': 'OR10J3', 'score': 9.19}, {'connected_gene': 'DUSP23', 'score': 9.15}, {'connected_gene': 'ACKR1', 'score': 8.02}, {'connected_gene': 'CADM3-AS1', 'score': 0.77}, {'connected_gene': 'MPTX1', 'score': 0.2}]
chr1	GH01I159171	159171311	159171460	0.46	[{'connected_gene': 'CADM3', 'score': 550.77}, {'connected_gene': 'AIM2', 'score': 0.34}]
chr1	GH01I159174	159171491	159171640	0.93	[{'connected_gene': 'CADM3', 'score': 550.77}, {'connected_gene': 'AIM2', 'score': 0.34}]
chr1	GH01I159172	159172567	159173600	0.93	[{'connected_gene': 'CADM3', 'score': 556.75}, {'connected_gene': 'ACKR1', 'score': 17.61}, {'connected_gene': 'CADM3-AS1', 'score': 11.16}, {'connected_gene': 'AIM2', 'score': 11.15}, {'connected_gene': 'ENSG00000212161', 'score': 9.16}, {'connected_gene': 'OR10J3', 'score': 9.01}, {'connected_gene': 'OR6N1', 'score': 3.76}, {'connected_gene': 'OR6K3', 'score': 3.7}, {'connected_gene': 'FCER1A', 'score': 3.43}, {'connected_gene': 'OR6N2', 'score': 2.9}, {'connected_gene': 'OR10J5', 'score': 1.24}, {'connected_gene': 'RNA5SP60', 'score': 0.44}]
chr1	GH01I159173	159171791	159171940	0.46	[{'connected_gene': 'CADM3', 'score': 550.77}, {'connected_gene': 'RNA5SP60', 'score': 0.44}]
chr1	GH01I159881	159881288	159882982	1.61	[{'connected_gene': 'RPSAP18', 'score': 36.6}, {'connected_gene': 'ENSG00000272668', 'score': 32.19}, {'connected_gene': 'SNHG28', 'score': 31.7}, {'connected_gene': 'LOC100287049', 'score': 22.64}, {'connected_gene': 'SLAMF8', 'score': 12.57}, {'connected_gene': 'PIGM', 'score': 12.13}, {'connected_gene': 'DCAF8', 'score': 11.34}, {'connected_gene': 'CADM3', 'score': 11.13}, {'connected_gene': 'CADM3-AS1', 'score': 10.32}, {'connected_gene': 'COPA', 'score': 9.98}, {'connected_gene': 'VSIG8', 'score': 6.77}, {'connected_gene': 'SLAMF9', 'score': 5.45}, {'connected_gene': 'TAGLN2', 'score': 2.04}, {'connected_gene': 'ENSG00000256029', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.37}, {'connected_gene': 'MIR4259', 'score': 0.37}]
chr1	GH01I159187	159187201	159189136	1.11	[{'connected_gene': 'RNA5SP60', 'score': 0.44}, {'connected_gene': 'CADM3', 'score': 0.37}, {'connected_gene': 'ACKR1', 'score': 0.37}]
chr1	GH01I159141	159141577	159142400	0.84	[{'connected_gene': 'GC01M159143', 'score': 550.77}, {'connected_gene': 'TRR-TCT4-1', 'score': 550.77}, {'connected_gene': 'OR6K3', 'score': 18.3}, {'connected_gene': 'OR6N1', 'score': 15.86}, {'connected_gene': 'FCER1A', 'score': 14.8}, {'connected_gene': 'CADM3', 'score': 12.17}, {'connected_gene': 'ACKR1', 'score': 11.31}, {'connected_gene': 'CADM3-AS1', 'score': 11.3}, {'connected_gene': 'OR6N2', 'score': 10.15}, {'connected_gene': 'OR10J5', 'score': 7.95}, {'connected_gene': 'AIM2', 'score': 6.7}, {'connected_gene': 'OR10J1', 'score': 3.04}]