PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000519649	[[102729274, 102729348], [102732285, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740677]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740677]]
ENST00000521006	[[102729279, 102729681], [102732285, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740739], [102740924, 102740986], [102743061, 102744114], [102744246, 102745373]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740739], [102740924, 102740986], [102743061, 102743888]]
ENST00000518124	[[102729283, 102729348], [102732650, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738128]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738128]]
ENST00000518244	[[102729286, 102729348], [102729448, 102729681], [102732285, 102732642]]	None
ENST00000370250	[[102732296, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740739], [102740924, 102740986], [102743061, 102744594]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740739], [102740924, 102740986], [102743061, 102743888]]
ENST00000517724	[[102732468, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102744246, 102745015]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102744246, 102744650]]
ENST00000210633	[[102732591, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102743061, 102745372]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102743061, 102743888]]
ENST00000519756	[[102732751, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738858, 102739025]]	None
ENST00000518948	[[102740616, 102740739], [102740924, 102741177]]	None
ENST00000476171	[[102743473, 102743565], [102744246, 102744547]]	[[102743473, 102743565], [102744246, 102744547]]
ENST00000484128	[[102743968, 102744114], [102744246, 102744560], [102745374, 102745628]]	None
NM_001203244	[[102732285, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102744246, 102745373]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102744246, 102744650]]
NM_017893	[[102732285, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102743061, 102745373]]	[[102732669, 102732793], [102732885, 102733034], [102733303, 102733366], [102737388, 102737487], [102738051, 102738145], [102738283, 102738397], [102738605, 102738775], [102738858, 102739028], [102739604, 102739749], [102739878, 102740101], [102740334, 102740450], [102740578, 102740754], [102740924, 102740986], [102743061, 102743888]]

Promoter

Chrom	Start	End	Description
chr10	102729249	102729308	CAGE_peak_1_at_SEMA4G_5end
chr10	102729313	102729325	CAGE_peak_2_at_SEMA4G_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I100995	100995584	101003024	2.27	[{'connected_gene': 'LZTS2', 'score': 550.77}, {'connected_gene': 'MRPL43', 'score': 14.55}, {'connected_gene': 'SEMA4G', 'score': 12.38}, {'connected_gene': 'MIR608', 'score': 11.84}, {'connected_gene': 'ENSG00000272572', 'score': 10.11}, {'connected_gene': 'KCNIP2', 'score': 5.06}, {'connected_gene': 'PDZD7', 'score': 0.29}]
chr10	GH10I101030	101030066	101036428	2.47	[{'connected_gene': 'PDZD7', 'score': 580.21}, {'connected_gene': 'SFXN3', 'score': 557.7}, {'connected_gene': 'MRPL43', 'score': 34.14}, {'connected_gene': 'TWNK', 'score': 30.97}, {'connected_gene': 'KAZALD1', 'score': 13.04}, {'connected_gene': 'TLX1', 'score': 11.6}, {'connected_gene': 'TLX1NB', 'score': 11.59}, {'connected_gene': 'SEMA4G', 'score': 10.89}, {'connected_gene': 'ENSG00000236662', 'score': 10.68}, {'connected_gene': 'MIR608', 'score': 10.68}, {'connected_gene': 'CWF19L1', 'score': 10.66}, {'connected_gene': 'POLL', 'score': 9.97}, {'connected_gene': 'PHBP9', 'score': 9.88}, {'connected_gene': 'ENSG00000273162', 'score': 0.31}]
chr10	GH10I101028	101028737	101029813	0.82	[{'connected_gene': 'PDZD7', 'score': 550.77}, {'connected_gene': 'SFXN3', 'score': 550.77}, {'connected_gene': 'ENSG00000236662', 'score': 10.7}, {'connected_gene': 'MRPL43', 'score': 10.7}, {'connected_gene': 'TWNK', 'score': 10.7}, {'connected_gene': 'SEMA4G', 'score': 10.31}, {'connected_gene': 'LZTS2', 'score': 0.29}]
chr10	GH10I100968	100968769	100973262	2.17	[{'connected_gene': 'SEMA4G', 'score': 550.77}, {'connected_gene': 'MRPL43', 'score': 14.7}, {'connected_gene': 'PDZD7', 'score': 4.63}, {'connected_gene': 'GC10P100975', 'score': 0.77}]
chr10	GH10I100900	100900644	100902062	0.58	[{'connected_gene': 'SEMA4G', 'score': 10.47}, {'connected_gene': 'ENSG00000236662', 'score': 9.92}, {'connected_gene': 'MRPL43', 'score': 9.92}, {'connected_gene': 'TWNK', 'score': 9.92}, {'connected_gene': 'SLF2', 'score': 6.7}, {'connected_gene': 'ENSG00000222072', 'score': 0.44}, {'connected_gene': 'GC10P100864', 'score': 0.28}]
chr10	GH10I100939	100939904	100940053	0.31	[{'connected_gene': 'SEMA4G', 'score': 11.94}, {'connected_gene': 'SLF2', 'score': 11.85}, {'connected_gene': 'MIR608', 'score': 11.79}, {'connected_gene': 'ENSG00000236662', 'score': 10.95}, {'connected_gene': 'MRPL43', 'score': 10.95}, {'connected_gene': 'TWNK', 'score': 10.95}, {'connected_gene': 'ENSG00000272572', 'score': 0.31}, {'connected_gene': 'ENSG00000273476', 'score': 0.31}]
chr10	GH10I100535	100535160	100536713	2.04	[{'connected_gene': 'HIF1AN', 'score': 556.79}, {'connected_gene': 'SEC31B', 'score': 39.83}, {'connected_gene': 'PHBP9', 'score': 14.0}, {'connected_gene': 'CWF19L1', 'score': 12.45}, {'connected_gene': 'SLC25A28', 'score': 12.13}, {'connected_gene': 'MRPL43', 'score': 9.69}, {'connected_gene': 'SLF2', 'score': 9.55}, {'connected_gene': 'SEMA4G', 'score': 9.2}, {'connected_gene': 'NDUFB8', 'score': 0.44}, {'connected_gene': 'ENSG00000274660', 'score': 0.12}]
chr10	GH10I100633	100633769	100633787	0.23	[{'connected_gene': 'PAX2', 'score': 11.65}, {'connected_gene': 'WNT8B', 'score': 1.4}, {'connected_gene': 'SEMA4G', 'score': 1.25}, {'connected_gene': 'ENSG00000274660', 'score': 0.29}, {'connected_gene': 'NDUFB8', 'score': 0.15}]
chr10	GH10I100985	100985424	100985573	0.6	[{'connected_gene': 'ENSG00000236662', 'score': 550.77}, {'connected_gene': 'PIR56323', 'score': 550.77}, {'connected_gene': 'PIR34755', 'score': 550.77}, {'connected_gene': 'GC10P100985', 'score': 550.77}, {'connected_gene': 'PIR57005', 'score': 550.77}, {'connected_gene': 'GC10M100989', 'score': 550.77}, {'connected_gene': 'TWNK', 'score': 550.77}, {'connected_gene': 'SLF2', 'score': 4.65}, {'connected_gene': 'MRPL43', 'score': 0.77}, {'connected_gene': 'SEMA4G', 'score': 0.37}]
chr10	GH10I100909	100909540	100914389	2.46	[{'connected_gene': 'ENSG00000272572', 'score': 561.28}, {'connected_gene': 'SLF2', 'score': 555.34}, {'connected_gene': 'MRPL43', 'score': 22.19}, {'connected_gene': 'TWNK', 'score': 20.93}, {'connected_gene': 'CWF19L1', 'score': 19.84}, {'connected_gene': 'CHUK', 'score': 19.17}, {'connected_gene': 'POLL', 'score': 18.0}, {'connected_gene': 'PHBP9', 'score': 12.35}, {'connected_gene': 'SEMA4G', 'score': 10.74}, {'connected_gene': 'MIR608', 'score': 10.72}, {'connected_gene': 'DNMBP', 'score': 9.95}, {'connected_gene': 'ENSG00000222072', 'score': 0.77}]