PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369042	[[107386385, 107392154], [107419754, 107419957], [107420452, 107420500], [107436293, 107436473]]	[[107389907, 107392154], [107419754, 107419957], [107420452, 107420489]]
ENST00000429433	[[107386400, 107392154], [107419754, 107419957], [107420452, 107420500], [107427280, 107427366], [107435083, 107435636]]	[[107389907, 107392154], [107419754, 107419957], [107420452, 107420489]]
NM_001080450	[[107386384, 107392154], [107419754, 107419957], [107420452, 107420500], [107427280, 107427366], [107435083, 107435636]]	[[107389907, 107392154], [107419754, 107419957], [107420452, 107420489]]

Promoter

Chrom	Start	End	Description
chr6	107436524	107436543	CAGE_peak_5_at_BEND3_5end
chr6	107436697	107436730	CAGE_peak_2_at_BEND3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I106324	106324365	106326755	2.1	[{'connected_gene': 'ATG5', 'score': 550.77}, {'connected_gene': 'BEND3', 'score': 11.78}, {'connected_gene': 'RNU6-344P', 'score': 0.34}]
chr6	GH06I106729	106729695	106732672	1.45	[{'connected_gene': 'MIR587', 'score': 10.86}, {'connected_gene': 'LINC02532', 'score': 10.85}, {'connected_gene': 'QRSL1', 'score': 7.57}, {'connected_gene': 'BEND3', 'score': 1.23}, {'connected_gene': 'GC06M106741', 'score': 0.44}, {'connected_gene': 'LOC105377927', 'score': 0.31}]
chr6	GH06I106261	106261946	106262035	0.8	[{'connected_gene': 'BEND3', 'score': 4.61}, {'connected_gene': 'ENSG00000273744', 'score': 0.44}, {'connected_gene': 'PIR35075', 'score': 0.31}, {'connected_gene': 'ATG5', 'score': 0.21}]
chr6	GH06I106568	106566165	106566178	0.43	[{'connected_gene': 'BEND3', 'score': 3.09}, {'connected_gene': 'RTN4IP1', 'score': 1.72}, {'connected_gene': 'GC06P106541', 'score': 0.34}, {'connected_gene': 'GC06P106588', 'score': 0.34}, {'connected_gene': 'CRYBG1', 'score': 0.08}]
chr6	GH06I107453	107453649	107454067	0.43	[{'connected_gene': 'BEND3', 'score': 1.26}, {'connected_gene': 'PIR39325', 'score': 0.77}, {'connected_gene': 'PDSS2', 'score': 0.44}, {'connected_gene': 'GC06P107406', 'score': 0.25}]
chr6	GH06I106509	106509487	106517200	2.38	[{'connected_gene': 'BEND3', 'score': 20.41}, {'connected_gene': 'SOBP', 'score': 20.03}, {'connected_gene': 'ATG5', 'score': 19.43}, {'connected_gene': 'CRYBG1', 'score': 12.85}, {'connected_gene': 'QRSL1', 'score': 9.18}, {'connected_gene': 'LOC101927405', 'score': 0.39}, {'connected_gene': 'GC06P106528', 'score': 0.37}]
chr6	GH06I107633	107633776	107635540	0.43	[{'connected_gene': 'BEND3', 'score': 11.79}, {'connected_gene': 'GC06P107632', 'score': 0.77}, {'connected_gene': 'PIR51849', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.11}]
chr6	GH06I107654	107654615	107659914	1.75	[{'connected_gene': 'BEND3', 'score': 11.78}, {'connected_gene': 'PIR51849', 'score': 0.77}, {'connected_gene': 'GC06P107632', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I106761	106761256	106761269	0.33	[{'connected_gene': 'BEND3', 'score': 1.2}, {'connected_gene': 'RNU6-117P', 'score': 0.34}, {'connected_gene': 'GC06P106787', 'score': 0.34}, {'connected_gene': 'LINC02532', 'score': 0.31}, {'connected_gene': 'GC06M106747', 'score': 0.25}]
chr6	GH06I107113	107113482	107117310	2.23	[{'connected_gene': 'BEND3', 'score': 550.77}, {'connected_gene': 'RNU6-1299P', 'score': 0.37}]
chr6	GH06I107118	107118577	107119436	0.74	[{'connected_gene': 'BEND3', 'score': 0.77}, {'connected_gene': 'RNU6-1299P', 'score': 0.39}]
chr6	GH06I107105	107105347	107106903	0.63	[{'connected_gene': 'BEND3', 'score': 0.44}, {'connected_gene': 'GC06M107103', 'score': 0.31}]
chr6	GH06I107083	107083537	107084569	0.57	[{'connected_gene': 'BEND3', 'score': 12.15}, {'connected_gene': 'GC06M107103', 'score': 0.77}]
chr6	GH06I107101	107101854	107103613	0.58	[{'connected_gene': 'BEND3', 'score': 0.39}, {'connected_gene': 'GC06M107103', 'score': 0.34}]
chr6	GH06I107108	107108579	107108638	0.88	[{'connected_gene': 'BEND3', 'score': 550.44}, {'connected_gene': 'GC06M107103', 'score': 0.31}]
chr6	GH06I106599	106599203	106599468	0.42	[{'connected_gene': 'QRSL1', 'score': 15.42}, {'connected_gene': 'BEND3', 'score': 4.17}, {'connected_gene': 'GC06P106608', 'score': 0.44}, {'connected_gene': 'GC06P106588', 'score': 0.39}, {'connected_gene': 'RTN4IP1', 'score': 0.29}]
chr6	GH06I107124	107124537	107125747	0.69	[{'connected_gene': 'RNU6-1299P', 'score': 0.44}, {'connected_gene': 'BEND3', 'score': 0.44}]
chr6	GH06I107067	107067657	107067806	0.38	[{'connected_gene': 'PIR37934', 'score': 550.77}, {'connected_gene': 'PIR52349', 'score': 550.77}, {'connected_gene': 'PIR38225', 'score': 550.77}, {'connected_gene': 'PIR49317', 'score': 550.77}, {'connected_gene': 'GC06M107104', 'score': 550.77}, {'connected_gene': 'PIR31617', 'score': 550.77}, {'connected_gene': 'PIR44411', 'score': 550.77}, {'connected_gene': 'BEND3', 'score': 0.25}]
chr6	GH06I107073	107073937	107074086	0.2	[{'connected_gene': 'PIR35598', 'score': 0.77}, {'connected_gene': 'GC06M107103', 'score': 0.44}, {'connected_gene': 'BEND3', 'score': 0.26}]
chr6	GH06I107064	107064517	107065216	0.89	[{'connected_gene': 'PIR52349', 'score': 550.77}, {'connected_gene': 'PIR49317', 'score': 550.77}, {'connected_gene': 'C6orf203', 'score': 0.28}, {'connected_gene': 'BEND3', 'score': 0.23}]