PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000020926	[[45261851, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45307575, 45307870]]	[[45265602, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45307575, 45307758]]
ENST00000533332	[[45265251, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45279931, 45280047], [45290957, 45291059], [45307575, 45307618]]	[[45291041, 45291059], [45307575, 45307618]]
ENST00000528101	[[45274139, 45274273], [45275820, 45275955], [45277216, 45277442], [45307413, 45307475]]	[[45274139, 45274273], [45275820, 45275955], [45277216, 45277442], [45307413, 45307475]]
NM_001247987	[[45261852, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45279931, 45280047], [45290957, 45291059], [45307575, 45307884]]	[[45265602, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275932]]
NM_020826	[[45261852, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45307575, 45307884]]	[[45265602, 45265907], [45267933, 45268063], [45273971, 45274273], [45275820, 45275955], [45277216, 45277442], [45307575, 45307758]]

Promoter

Chrom	Start	End	Description
chr11	45307765	45307784	CAGE_peak_2_at_SYT13_5end
chr11	45307785	45307803	CAGE_peak_3_at_SYT13_5end
chr11	45307817	45307898	CAGE_peak_1_at_SYT13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I045105	45105154	45109169	0.71	[{'connected_gene': 'TP53I11', 'score': 12.22}, {'connected_gene': 'ENSG00000254497', 'score': 10.58}, {'connected_gene': 'LOC101928812', 'score': 6.8}, {'connected_gene': 'SYT13', 'score': 6.8}, {'connected_gene': 'PRDM11', 'score': 0.39}, {'connected_gene': 'LOC105376652', 'score': 0.28}]
chr11	GH11I045339	45339801	45340600	1.28	[{'connected_gene': 'CHST1', 'score': 10.16}, {'connected_gene': 'LOC101928812', 'score': 7.68}, {'connected_gene': 'SYT13', 'score': 0.23}]
chr11	GH11I045272	45272325	45273426	0.2	[{'connected_gene': 'SYT13', 'score': 27.9}, {'connected_gene': 'ENSG00000254664', 'score': 10.55}, {'connected_gene': 'CHST1', 'score': 9.24}, {'connected_gene': 'ENSG00000254497', 'score': 0.37}]
chr11	GH11I045207	45207879	45212138	0.96	[{'connected_gene': 'SYT13', 'score': 22.24}, {'connected_gene': 'ENSG00000254664', 'score': 11.77}, {'connected_gene': 'ENSG00000254497', 'score': 11.2}, {'connected_gene': 'PRDM11', 'score': 4.47}, {'connected_gene': 'LOC101060179', 'score': 0.77}, {'connected_gene': 'PIR62216', 'score': 0.21}]
chr11	GH11I045385	45385866	45386199	0.62	[{'connected_gene': 'SYT13', 'score': 6.81}, {'connected_gene': 'CRY2', 'score': 4.25}, {'connected_gene': 'ENSG00000254651', 'score': 0.39}, {'connected_gene': 'LOC399886', 'score': 0.39}]
chr11	GH11I045244	45244754	45245964	0.38	[{'connected_gene': 'SYT13', 'score': 10.59}, {'connected_gene': 'LOC101928812', 'score': 9.36}, {'connected_gene': 'PIR48754', 'score': 0.44}, {'connected_gene': 'ENSG00000254664', 'score': 0.39}]
chr11	GH11I045264	45264256	45267959	0.91	[{'connected_gene': 'SYT13', 'score': 28.08}, {'connected_gene': 'ENSG00000254664', 'score': 11.94}, {'connected_gene': 'LOC101928812', 'score': 4.53}, {'connected_gene': 'ENSG00000254497', 'score': 0.39}]
chr11	GH11I045178	45178974	45182444	1.55	[{'connected_gene': 'SYT13', 'score': 24.59}, {'connected_gene': 'ENSG00000254497', 'score': 11.1}, {'connected_gene': 'LOC101060179', 'score': 0.29}, {'connected_gene': 'PIR62216', 'score': 0.29}, {'connected_gene': 'PRDM11', 'score': 0.17}]
chr11	GH11I045176	45176796	45177992	0.46	[{'connected_gene': 'SYT13', 'score': 4.37}, {'connected_gene': 'PIR62216', 'score': 0.31}, {'connected_gene': 'LOC101060179', 'score': 0.28}, {'connected_gene': 'PRDM11', 'score': 0.18}]
chr11	GH11I045170	45170353	45171127	0.38	[{'connected_gene': 'SYT13', 'score': 12.33}, {'connected_gene': 'PIR62216', 'score': 0.34}, {'connected_gene': 'LOC101060179', 'score': 0.26}, {'connected_gene': 'PRDM11', 'score': 0.18}]
chr11	GH11I045202	45202023	45203361	0.2	[{'connected_gene': 'SYT13', 'score': 32.7}, {'connected_gene': 'ENSG00000254664', 'score': 11.7}, {'connected_gene': 'ENSG00000254497', 'score': 10.49}, {'connected_gene': 'LOC101060179', 'score': 0.39}, {'connected_gene': 'PIR62216', 'score': 0.23}, {'connected_gene': 'PRDM11', 'score': 0.14}]
chr11	GH11I045215	45215024	45216695	0.31	[{'connected_gene': 'SYT13', 'score': 37.36}, {'connected_gene': 'ENSG00000254497', 'score': 11.38}, {'connected_gene': 'LOC101060179', 'score': 0.77}, {'connected_gene': 'ENSG00000254664', 'score': 0.37}, {'connected_gene': 'GC11M045234', 'score': 0.37}, {'connected_gene': 'PRDM11', 'score': 0.13}]
chr11	GH11I045160	45160695	45163147	0.54	[{'connected_gene': 'SYT13', 'score': 10.62}, {'connected_gene': 'PIR62216', 'score': 0.39}, {'connected_gene': 'LOC101060179', 'score': 0.23}, {'connected_gene': 'PRDM11', 'score': 0.2}]
chr11	GH11I045285	45285084	45287070	1.19	[{'connected_gene': 'SYT13', 'score': 550.77}, {'connected_gene': 'ENSG00000254497', 'score': 11.51}]
chr11	GH11I045259	45259047	45260856	0.76	[{'connected_gene': 'SYT13', 'score': 29.24}, {'connected_gene': 'ENSG00000254497', 'score': 0.44}]
chr11	GH11I045332	45332490	45334459	1.12	[{'connected_gene': 'PRDM11', 'score': 18.94}, {'connected_gene': 'SYT13', 'score': 12.25}, {'connected_gene': 'ENSG00000254497', 'score': 11.05}, {'connected_gene': 'CHST1', 'score': 9.25}, {'connected_gene': 'LOC101928812', 'score': 0.34}]
chr11	GH11I045154	45154644	45159973	1.62	[{'connected_gene': 'PRDM11', 'score': 550.21}, {'connected_gene': 'SYT13', 'score': 20.42}, {'connected_gene': 'ENSG00000254497', 'score': 11.46}, {'connected_gene': 'ENSG00000254664', 'score': 10.22}, {'connected_gene': 'PIR62216', 'score': 0.44}, {'connected_gene': 'LOC101060179', 'score': 0.22}]
chr11	GH11I045145	45145605	45148340	2.42	[{'connected_gene': 'LOC105376652', 'score': 550.77}, {'connected_gene': 'PIR62216', 'score': 550.77}, {'connected_gene': 'PRDM11', 'score': 550.23}, {'connected_gene': 'SYT13', 'score': 7.59}, {'connected_gene': 'LOC101928812', 'score': 7.54}]
chr11	GH11I045343	45343429	45344694	0.38	[{'connected_gene': 'LOC101928812', 'score': 11.68}, {'connected_gene': 'CHST1', 'score': 10.58}, {'connected_gene': 'SYT13', 'score': 0.22}]
chr11	GH11I045354	45354870	45356199	1.57	[{'connected_gene': 'LOC101928812', 'score': 558.09}, {'connected_gene': 'CHST1', 'score': 10.21}, {'connected_gene': 'LOC105376658', 'score': 9.99}, {'connected_gene': 'ENSG00000254497', 'score': 9.99}, {'connected_gene': 'SYT13', 'score': 4.53}, {'connected_gene': 'LOC399886', 'score': 0.37}]
chr11	GH11I045087	45087719	45091000	1.22	[{'connected_gene': 'LOC101928812', 'score': 7.23}, {'connected_gene': 'SYT13', 'score': 5.07}, {'connected_gene': 'TP53I11', 'score': 1.62}, {'connected_gene': 'PRDM11', 'score': 0.77}, {'connected_gene': 'LOC105376650', 'score': 0.18}]
chr11	GH11I045085	45085252	45086664	0.63	[{'connected_gene': 'LOC101928812', 'score': 5.73}, {'connected_gene': 'SYT13', 'score': 4.89}, {'connected_gene': 'PRDM11', 'score': 0.44}, {'connected_gene': 'LOC105376650', 'score': 0.18}]
chr11	GH11I045089	45087250	45087399	0.4	[{'connected_gene': 'LOC101928812', 'score': 7.05}, {'connected_gene': 'SYT13', 'score': 4.98}, {'connected_gene': 'PRDM11', 'score': 0.44}, {'connected_gene': 'LOC105376650', 'score': 0.18}]
chr11	GH11I045360	45360055	45367295	0.56	[{'connected_gene': 'LOC101928812', 'score': 16.21}, {'connected_gene': 'DKFZp779M0652', 'score': 10.89}, {'connected_gene': 'ENSG00000255091', 'score': 10.3}, {'connected_gene': 'CHST1', 'score': 10.3}, {'connected_gene': 'SYT13', 'score': 4.76}, {'connected_gene': 'LOC399886', 'score': 0.44}]
chr11	GH11I044976	44976293	44981685	1.53	[{'connected_gene': 'LOC101928812', 'score': 21.41}, {'connected_gene': 'EXT2', 'score': 11.58}, {'connected_gene': 'MAPK8IP1', 'score': 10.34}, {'connected_gene': 'SYT13', 'score': 1.59}, {'connected_gene': 'TSPAN18', 'score': 1.24}, {'connected_gene': 'GC11P044981', 'score': 0.77}, {'connected_gene': 'LOC221122', 'score': 0.44}]
chr11	GH11I045662	45662601	45663968	1.05	[{'connected_gene': 'PIR58767', 'score': 550.77}, {'connected_gene': 'CHST1', 'score': 9.44}, {'connected_gene': 'LARGE2', 'score': 4.54}, {'connected_gene': 'MAPK8IP1', 'score': 2.64}, {'connected_gene': 'CRY2', 'score': 1.69}, {'connected_gene': 'SYT13', 'score': 1.63}, {'connected_gene': 'GC11M045649', 'score': 0.77}, {'connected_gene': 'PIRC51', 'score': 0.77}]
chr11	GH11I045233	45233400	45233673	0.81	[{'connected_gene': 'ENSG00000254664', 'score': 550.77}, {'connected_gene': 'GC11M045234', 'score': 550.77}, {'connected_gene': 'SYT13', 'score': 2.06}, {'connected_gene': 'CHST1', 'score': 1.57}, {'connected_gene': 'LOC101060179', 'score': 0.34}, {'connected_gene': 'PRDM11', 'score': 0.12}]
chr11	GH11I045193	45193057	45194274	0.4	[{'connected_gene': 'ENSG00000254664', 'score': 11.51}, {'connected_gene': 'ENSG00000254497', 'score': 11.32}, {'connected_gene': 'SYT13', 'score': 4.49}, {'connected_gene': 'LOC101060179', 'score': 0.37}, {'connected_gene': 'PIR62216', 'score': 0.25}, {'connected_gene': 'PRDM11', 'score': 0.15}]
chr11	GH11I045252	45252490	45252699	0.68	[{'connected_gene': 'ENSG00000254497', 'score': 550.77}, {'connected_gene': 'PIR48754', 'score': 550.77}, {'connected_gene': 'ENSG00000254664', 'score': 0.37}, {'connected_gene': 'SYT13', 'score': 0.29}]
chr11	GH11I045400	45400191	45401575	0.31	[{'connected_gene': 'ENSG00000254651', 'score': 558.25}, {'connected_gene': 'SYT13', 'score': 5.44}, {'connected_gene': 'ENSG00000255041', 'score': 0.14}]