PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265138	[[90664540, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90678629, 90679176]]	[[90667216, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90678629, 90678909]]
ENST00000511391	[[90666614, 90667273], [90669500, 90669662]]	None
ENST00000505631	[[90670041, 90670093], [90670738, 90671161]]	None
ENST00000514284	[[90670816, 90670995], [90671327, 90671430], [90674510, 90674592], [90675739, 90675906]]	None
ENST00000508948	[[90671337, 90671430], [90672437, 90672585], [90674510, 90674592], [90676596, 90676837]]	None
ENST00000503192	[[90671343, 90671430], [90672437, 90672585], [90674510, 90674592], [90675698, 90675968]]	None
ENST00000507075	[[90672375, 90672585], [90674510, 90674592], [90678629, 90678692]]	None
NR_138071	[[90664448, 90667273], [90669500, 90669693], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90675264, 90676114]]	None
NM_001329670	[[90664448, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90675264, 90676114]]	[[90667216, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670948]]
NM_001329671	[[90664448, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90674510, 90674592], [90675264, 90676114]]	[[90667216, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670948]]
NR_138072	[[90664448, 90667273], [90669500, 90669693], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90678629, 90679190]]	None
NM_020801	[[90664448, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90678629, 90679190]]	[[90667216, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90672437, 90672585], [90674510, 90674592], [90678629, 90678909]]
NM_001329672	[[90664448, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670995], [90671327, 90671430], [90674510, 90674592], [90678629, 90679190]]	[[90667216, 90667273], [90669500, 90669655], [90669930, 90670093], [90670738, 90670948]]

Promoter

Chrom	Start	End	Description
chr5	90666815	90666826	CAGE_peak_2_at_ARRDC3_5end
chr5	90675900	90675920	CAGE_peak_4_at_ARRDC3_5end
chr5	90675927	90675951	CAGE_peak_5_at_ARRDC3_5end
chr5	90676037	90676056	CAGE_peak_11_at_ARRDC3_5end
chr5	90676764	90676784	CAGE_peak_7_at_ARRDC3_5end
chr5	90679111	90679143	CAGE_peak_1_at_ARRDC3_5end
chr5	90679145	90679152	CAGE_peak_3_at_ARRDC3_5end
chr5	90679545	90679570	CAGE_peak_13_at_ARRDC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I090557	90557949	90559423	1.9	[{'connected_gene': 'ADGRV1', 'score': 550.31}, {'connected_gene': 'ARRDC3', 'score': 11.16}, {'connected_gene': 'LYSMD3', 'score': 9.96}, {'connected_gene': 'POLR3G', 'score': 9.13}, {'connected_gene': 'LOC105379077', 'score': 0.09}]
chr5	GH05I091283	91283947	91284738	1.09	[{'connected_gene': 'LOC729040', 'score': 550.77}, {'connected_gene': 'ARRDC3', 'score': 1.46}, {'connected_gene': 'GC05P091311', 'score': 0.31}]
chr5	GH05I091161	91161670	91164165	1.39	[{'connected_gene': 'ARRDC3', 'score': 3.29}, {'connected_gene': 'GC05P091159', 'score': 0.77}, {'connected_gene': 'ENSG00000212930', 'score': 0.21}, {'connected_gene': 'ADGRV1', 'score': 0.03}]
chr5	GH05I091132	91132603	91132735	0.53	[{'connected_gene': 'ARRDC3', 'score': 2.2}, {'connected_gene': 'GC05P091129', 'score': 0.77}, {'connected_gene': 'GC05P091159', 'score': 0.31}, {'connected_gene': 'ADGRV1', 'score': 0.03}]
chr5	GH05I091058	91058104	91059045	1.04	[{'connected_gene': 'ARRDC3', 'score': 1.89}, {'connected_gene': 'TMEM251P1', 'score': 0.31}, {'connected_gene': 'GC05P091129', 'score': 0.19}, {'connected_gene': 'ADGRV1', 'score': 0.03}]
chr5	GH05I091054	91054649	91054857	0.24	[{'connected_gene': 'ARRDC3', 'score': 1.2}, {'connected_gene': 'TMEM251P1', 'score': 0.34}, {'connected_gene': 'GC05P091129', 'score': 0.19}, {'connected_gene': 'ADGRV1', 'score': 0.03}]
chr5	GH05I091052	91052927	91054200	0.87	[{'connected_gene': 'ARRDC3', 'score': 2.0}, {'connected_gene': 'TMEM251P1', 'score': 0.34}, {'connected_gene': 'GC05P091129', 'score': 0.18}, {'connected_gene': 'ADGRV1', 'score': 0.03}]
chr5	GH05I091390	91390404	91390553	0.63	[{'connected_gene': 'ARRDC3', 'score': 0.44}, {'connected_gene': 'ARRDC3-AS1', 'score': 0.39}, {'connected_gene': 'RAB5CP2', 'score': 0.17}]
chr5	GH05I091376	91376691	91385173	2.62	[{'connected_gene': 'ARRDC3', 'score': 556.65}, {'connected_gene': 'ARRDC3-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000241059', 'score': 16.41}, {'connected_gene': 'CETN3', 'score': 12.54}, {'connected_gene': 'RPS18P7', 'score': 12.31}, {'connected_gene': 'ENSG00000260871', 'score': 10.39}, {'connected_gene': 'LYSMD3', 'score': 4.55}]
chr5	GH05I091189	91189194	91191220	1.08	[{'connected_gene': 'ARRDC3', 'score': 1.32}, {'connected_gene': 'ENSG00000212930', 'score': 0.29}, {'connected_gene': 'GC05P091159', 'score': 0.29}]
chr5	GH05I091182	91182351	91184088	0.86	[{'connected_gene': 'ARRDC3', 'score': 7.82}, {'connected_gene': 'GC05P091159', 'score': 0.34}, {'connected_gene': 'ENSG00000212930', 'score': 0.26}]
chr5	GH05I091169	91169830	91170993	0.97	[{'connected_gene': 'ARRDC3', 'score': 2.45}, {'connected_gene': 'GC05P091159', 'score': 0.39}, {'connected_gene': 'ENSG00000212930', 'score': 0.23}]
chr5	GH05I091218	91218545	91220563	1.33	[{'connected_gene': 'ARRDC3', 'score': 3.0}, {'connected_gene': 'ENSG00000212930', 'score': 0.77}, {'connected_gene': 'GC05P091159', 'score': 0.21}]
chr5	GH05I091229	91229082	91229296	0.55	[{'connected_gene': 'ARRDC3', 'score': 1.36}, {'connected_gene': 'ENSG00000251093', 'score': 0.77}, {'connected_gene': 'GC05M091237', 'score': 0.44}]
chr5	GH05I091301	91301001	91302605	1.37	[{'connected_gene': 'RPS18P7', 'score': 12.59}, {'connected_gene': 'ENSG00000241059', 'score': 12.59}, {'connected_gene': 'ARRDC3', 'score': 10.64}, {'connected_gene': 'GC05P091311', 'score': 0.44}, {'connected_gene': 'LOC729040', 'score': 0.37}]
chr5	GH05I091472	91472553	91474026	0.2	[{'connected_gene': 'RAB5CP2', 'score': 0.77}, {'connected_gene': 'ARRDC3', 'score': 0.17}]
chr5	GH05I091468	91468801	91470553	0.97	[{'connected_gene': 'RAB5CP2', 'score': 0.44}, {'connected_gene': 'ARRDC3', 'score': 0.17}]
chr5	GH05I091370	91370069	91376293	0.56	[{'connected_gene': 'LYSMD3', 'score': 4.83}, {'connected_gene': 'ENSG00000241059', 'score': 4.72}, {'connected_gene': 'GC05P091368', 'score': 0.77}, {'connected_gene': 'ARRDC3-AS1', 'score': 0.44}, {'connected_gene': 'ARRDC3', 'score': 0.39}]
chr5	GH05I091419	91419704	91419853	0.59	[{'connected_gene': 'ARRDC3-AS1', 'score': 0.28}, {'connected_gene': 'ARRDC3', 'score': 0.28}, {'connected_gene': 'RAB5CP2', 'score': 0.22}]
chr5	GH05I091405	91405060	91405074	0.22	[{'connected_gene': 'ARRDC3-AS1', 'score': 0.34}, {'connected_gene': 'ARRDC3', 'score': 0.34}, {'connected_gene': 'RAB5CP2', 'score': 0.19}]
chr5	GH05I091433	91433358	91435405	0.31	[{'connected_gene': 'ENSG00000241059', 'score': 4.49}, {'connected_gene': 'RAB5CP2', 'score': 0.26}, {'connected_gene': 'ARRDC3-AS1', 'score': 0.23}, {'connected_gene': 'ARRDC3', 'score': 0.23}]
chr5	GH05I091310	91310046	91315799	1.45	[{'connected_gene': 'ENSG00000271762', 'score': 550.77}, {'connected_gene': 'LUCAT1', 'score': 550.77}, {'connected_gene': 'GC05P091311', 'score': 550.77}, {'connected_gene': 'RPS18P7', 'score': 13.08}, {'connected_gene': 'ENSG00000241059', 'score': 13.08}, {'connected_gene': 'MBLAC2', 'score': 12.51}, {'connected_gene': 'ARRDC3', 'score': 12.23}, {'connected_gene': 'ENSG00000277001', 'score': 0.77}]