PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000530267	[[77899857, 77900203], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925072]]	[[77916986, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77924859]]
ENST00000530535	[[77899868, 77900203], [77920493, 77921790], [77924691, 77925184]]	None
ENST00000528910	[[77899948, 77900203], [77908981, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77920528]]	[[77909040, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77920528]]
ENST00000529308	[[77899952, 77900203], [77907281, 77907964], [77908981, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925757]]	[[77907291, 77907964], [77908981, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77924859]]
ENST00000441408	[[77907842, 77907964], [77908981, 77909114], [77911178, 77911280], [77911695, 77911854], [77916887, 77917085], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925465]]	[[77916936, 77917085], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77924859]]
ENST00000530546	[[77907842, 77907964], [77908981, 77909114], [77911178, 77911280], [77911695, 77911854], [77916887, 77917085], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925465]]	[[77907842, 77907964], [77908981, 77909114], [77911178, 77911248]]
ENST00000526425	[[77910015, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925753]]	[[77910641, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77924859]]
ENST00000530521	[[77918282, 77918669], [77919902, 77920009], [77920493, 77920597]]	None
NM_020798	[[77899857, 77900203], [77907281, 77907964], [77908981, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77925757]]	[[77907291, 77907964], [77908981, 77909114], [77910640, 77910770], [77911178, 77911280], [77911695, 77911854], [77916887, 77917081], [77918575, 77918669], [77919902, 77920009], [77920493, 77921790], [77924691, 77924859]]

Promoter

Chrom	Start	End	Description
chr11	77899842	77899854	CAGE_peak_3_at_USP35_5end
chr11	77899920	77899992	CAGE_peak_1_at_USP35_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I078200	78200732	78203907	1.59	[{'connected_gene': 'INTS4', 'score': 11.56}, {'connected_gene': 'NARS2', 'score': 11.38}, {'connected_gene': 'ENSG00000254649', 'score': 10.55}, {'connected_gene': 'GAB2', 'score': 10.02}, {'connected_gene': 'RSF1', 'score': 2.31}, {'connected_gene': 'PIR47261', 'score': 0.44}, {'connected_gene': 'USP35', 'score': 0.39}, {'connected_gene': 'KCTD21', 'score': 0.39}]
chr11	GH11I078214	78213776	78213921	0.4	[{'connected_gene': 'NARS2', 'score': 10.19}, {'connected_gene': 'PIR32516', 'score': 0.77}, {'connected_gene': 'PIR44859', 'score': 0.77}, {'connected_gene': 'USP35', 'score': 0.31}]
chr11	GH11I078156	78156175	78157126	0.94	[{'connected_gene': 'USP35', 'score': 11.54}, {'connected_gene': 'KCTD21', 'score': 11.54}, {'connected_gene': 'INTS4', 'score': 9.01}, {'connected_gene': 'GC11P078155', 'score': 0.77}, {'connected_gene': 'PIR47143', 'score': 0.77}, {'connected_gene': 'GC11M078165', 'score': 0.44}, {'connected_gene': 'KCTD21-AS1', 'score': 0.37}]
chr11	GH11I078160	78160163	78160371	0.2	[{'connected_gene': 'USP35', 'score': 11.56}, {'connected_gene': 'KCTD21', 'score': 11.56}, {'connected_gene': 'INTS4', 'score': 9.01}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'GC11M078165', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}, {'connected_gene': 'KCTD21-AS1', 'score': 0.34}]
chr11	GH11I078185	78185155	78190596	2.8	[{'connected_gene': 'USP35', 'score': 561.1}, {'connected_gene': 'KCTD21', 'score': 550.77}, {'connected_gene': 'RPL21P95', 'score': 51.46}, {'connected_gene': 'INTS4', 'score': 49.28}, {'connected_gene': 'LOC101928865', 'score': 48.78}, {'connected_gene': 'ENSG00000255449', 'score': 39.62}, {'connected_gene': 'KCTD21-AS1', 'score': 25.72}, {'connected_gene': 'ALG8', 'score': 11.53}, {'connected_gene': 'RSF1', 'score': 2.2}, {'connected_gene': 'PIR40351', 'score': 0.37}]
chr11	GH11I078194	78194057	78194312	0.31	[{'connected_gene': 'USP35', 'score': 0.44}, {'connected_gene': 'KCTD21', 'score': 0.44}, {'connected_gene': 'PIR47261', 'score': 0.37}]
chr11	GH11I078192	78192027	78193728	1.04	[{'connected_gene': 'USP35', 'score': 11.92}, {'connected_gene': 'KCTD21-AS1', 'score': 5.98}, {'connected_gene': 'ALG8', 'score': 5.63}, {'connected_gene': 'KCTD21', 'score': 0.77}, {'connected_gene': 'PIR47261', 'score': 0.37}]
chr11	GH11I078173	78173084	78173707	0.2	[{'connected_gene': 'KCTD21', 'score': 6.91}, {'connected_gene': 'PIR40351', 'score': 0.77}, {'connected_gene': 'USP35', 'score': 0.37}, {'connected_gene': 'KCTD21-AS1', 'score': 0.29}]
chr11	GH11I078138	78138477	78141055	2.07	[{'connected_gene': 'KCTD21-AS1', 'score': 625.65}, {'connected_gene': 'ALG8', 'score': 550.77}, {'connected_gene': 'INTS4', 'score': 25.31}, {'connected_gene': 'KCTD21', 'score': 20.19}, {'connected_gene': 'ENSG00000255449', 'score': 12.65}, {'connected_gene': 'LOC101928865', 'score': 12.34}, {'connected_gene': 'RPL21P95', 'score': 11.74}, {'connected_gene': 'USP35', 'score': 10.92}, {'connected_gene': 'THRSP', 'score': 10.26}]
chr11	GH11I078161	78160916	78161118	0.52	[{'connected_gene': 'KCTD21-AS1', 'score': 12.83}, {'connected_gene': 'ALG8', 'score': 12.83}, {'connected_gene': 'USP35', 'score': 12.46}, {'connected_gene': 'KCTD21', 'score': 12.46}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'GC11M078165', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}]
chr11	GH11I078162	78162762	78163171	0.2	[{'connected_gene': 'KCTD21-AS1', 'score': 12.83}, {'connected_gene': 'ALG8', 'score': 12.83}, {'connected_gene': 'USP35', 'score': 12.46}, {'connected_gene': 'KCTD21', 'score': 12.46}, {'connected_gene': 'GC11M078165', 'score': 0.77}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}]
chr11	GH11I078164	78162201	78162583	0.49	[{'connected_gene': 'KCTD21-AS1', 'score': 12.83}, {'connected_gene': 'ALG8', 'score': 12.83}, {'connected_gene': 'USP35', 'score': 12.46}, {'connected_gene': 'KCTD21', 'score': 12.46}, {'connected_gene': 'GC11M078165', 'score': 0.77}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}]
chr11	GH11I078165	78161232	78161908	0.31	[{'connected_gene': 'KCTD21-AS1', 'score': 79.54}, {'connected_gene': 'ALG8', 'score': 12.83}, {'connected_gene': 'USP35', 'score': 12.46}, {'connected_gene': 'KCTD21', 'score': 12.46}, {'connected_gene': 'GC11M078165', 'score': 0.77}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}]
chr11	GH11I078179	78179795	78179944	0.94	[{'connected_gene': 'KCTD21-AS1', 'score': 11.55}, {'connected_gene': 'ALG8', 'score': 11.55}, {'connected_gene': 'USP35', 'score': 0.44}, {'connected_gene': 'PIR40351', 'score': 0.44}, {'connected_gene': 'KCTD21', 'score': 0.44}]
chr11	GH11I078158	78158623	78159693	0.2	[{'connected_gene': 'KCTD21-AS1', 'score': 67.2}, {'connected_gene': 'USP35', 'score': 11.56}, {'connected_gene': 'KCTD21', 'score': 11.56}, {'connected_gene': 'INTS4', 'score': 9.01}, {'connected_gene': 'GC11P078155', 'score': 0.77}, {'connected_gene': 'PIR47143', 'score': 0.77}, {'connected_gene': 'GC11M078165', 'score': 0.44}]
chr11	GH11I078171	78171560	78173043	0.43	[{'connected_gene': 'KCTD21-AS1', 'score': 30.32}, {'connected_gene': 'KCTD21', 'score': 5.56}, {'connected_gene': 'PIR40351', 'score': 0.77}, {'connected_gene': 'USP35', 'score': 0.37}]
chr11	GH11I078250	78250906	78252085	0.71	[{'connected_gene': 'PIR56737', 'score': 550.77}, {'connected_gene': 'ENSG00000254649', 'score': 11.04}, {'connected_gene': 'GAB2', 'score': 10.47}, {'connected_gene': 'USP35', 'score': 10.23}, {'connected_gene': 'KCTD21', 'score': 10.23}, {'connected_gene': 'NARS2', 'score': 9.01}, {'connected_gene': 'LOC105369402', 'score': 0.26}]
chr11	GH11I078256	78256494	78257780	1.25	[{'connected_gene': 'ENSG00000254649', 'score': 10.81}, {'connected_gene': 'GAB2', 'score': 10.46}, {'connected_gene': 'USP35', 'score': 10.22}, {'connected_gene': 'KCTD21', 'score': 10.22}, {'connected_gene': 'NARS2', 'score': 9.6}, {'connected_gene': 'PIR56737', 'score': 0.44}, {'connected_gene': 'LOC105369402', 'score': 0.28}]
chr11	GH11I078207	78207388	78209686	0.56	[{'connected_gene': 'PIR47261', 'score': 550.77}, {'connected_gene': 'PIR44859', 'score': 550.77}, {'connected_gene': 'NARS2', 'score': 10.45}, {'connected_gene': 'USP35', 'score': 0.37}, {'connected_gene': 'KCTD21', 'score': 0.37}]
chr11	GH11I078149	78149775	78150001	0.63	[{'connected_gene': 'GC11P078150', 'score': 550.77}, {'connected_gene': 'GC11P078151', 'score': 550.77}, {'connected_gene': 'USP35', 'score': 11.91}, {'connected_gene': 'KCTD21', 'score': 11.91}, {'connected_gene': 'THRSP', 'score': 9.91}, {'connected_gene': 'INTS4', 'score': 9.48}, {'connected_gene': 'NDUFC2', 'score': 7.89}, {'connected_gene': 'KCTD21-AS1', 'score': 0.39}]
chr11	GH11I078150	78150895	78151164	0.54	[{'connected_gene': 'GC11P078150', 'score': 550.77}, {'connected_gene': 'GC11P078151', 'score': 550.77}, {'connected_gene': 'USP35', 'score': 11.91}, {'connected_gene': 'KCTD21', 'score': 11.91}, {'connected_gene': 'THRSP', 'score': 9.91}, {'connected_gene': 'INTS4', 'score': 9.48}, {'connected_gene': 'PIR47143', 'score': 0.77}, {'connected_gene': 'GC11P078155', 'score': 0.77}, {'connected_gene': 'KCTD21-AS1', 'score': 0.39}]
chr11	GH11I078213	78213175	78213324	0.51	[{'connected_gene': 'PIR32516', 'score': 0.77}, {'connected_gene': 'PIR44859', 'score': 0.77}, {'connected_gene': 'USP35', 'score': 0.34}]
chr11	GH11I078166	78166495	78167833	0.88	[{'connected_gene': 'GC11M078165', 'score': 550.77}, {'connected_gene': 'KCTD21-AS1', 'score': 17.73}, {'connected_gene': 'ALG8', 'score': 12.72}, {'connected_gene': 'USP35', 'score': 12.26}, {'connected_gene': 'KCTD21', 'score': 12.26}, {'connected_gene': 'NDUFC2', 'score': 10.66}, {'connected_gene': 'THRSP', 'score': 9.87}, {'connected_gene': 'PIR40351', 'score': 0.77}]
chr11	GH11I078163	78163642	78164980	0.72	[{'connected_gene': 'GC11M078165', 'score': 550.77}, {'connected_gene': 'KCTD21-AS1', 'score': 44.58}, {'connected_gene': 'ALG8', 'score': 12.75}, {'connected_gene': 'USP35', 'score': 12.26}, {'connected_gene': 'KCTD21', 'score': 12.26}, {'connected_gene': 'GC11P078155', 'score': 0.44}, {'connected_gene': 'PIR47143', 'score': 0.44}]
chr11	GH11I078151	78150319	78150824	0.46	[{'connected_gene': 'GC11P078150', 'score': 550.77}, {'connected_gene': 'GC11P078151', 'score': 550.77}, {'connected_gene': 'KCTD21-AS1', 'score': 53.53}, {'connected_gene': 'USP35', 'score': 11.91}, {'connected_gene': 'KCTD21', 'score': 11.91}, {'connected_gene': 'THRSP', 'score': 9.91}, {'connected_gene': 'INTS4', 'score': 9.48}]