PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000281741	[[52897307, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52986011], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010348], [53010981, 53011089], [53019033, 53019224]]	[[52899021, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52986011], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010275]]
ENST00000554399	[[52905976, 52906112], [52907281, 52907442], [53019033, 53019240]]	None
ENST00000555312	[[52922158, 52922180], [52923807, 52923892], [52929529, 52929688], [52936754, 52936891], [52937229, 52937392]]	[[52929665, 52929688], [52936754, 52936891], [52937229, 52937392]]
ENST00000557374	[[52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [53019033, 53019223]]	[[52955080, 52955138]]
NM_020784	[[52897307, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52986011], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010348], [53010981, 53011089], [53019033, 53019301]]	[[52899021, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52986011], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010275]]
NM_001160047	[[52897307, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52985996], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010348], [53010981, 53011089], [53019033, 53019301]]	[[52899021, 52899305], [52905921, 52906112], [52907281, 52907442], [52922041, 52922180], [52923807, 52923892], [52936754, 52936891], [52937229, 52937398], [52948947, 52949007], [52949539, 52949683], [52955080, 52955204], [52957108, 52957169], [52957556, 52957723], [52977957, 52978108], [52981597, 52981688], [52985889, 52985996], [53003436, 53003511], [53004316, 53004390], [53009088, 53009171], [53010115, 53010275]]

Promoter

Chrom	Start	End	Description
chr14	53019211	53019269	CAGE_peak_1_at_TXNDC16_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I052904	52904437	52909443	1.02	[{'connected_gene': 'TXNDC16', 'score': 6.88}, {'connected_gene': 'STYX', 'score': 6.13}, {'connected_gene': 'LOC101927620', 'score': 4.17}, {'connected_gene': 'GC14P052872', 'score': 0.28}, {'connected_gene': 'FERMT2', 'score': 0.25}, {'connected_gene': 'LOC105370500', 'score': 0.13}]
chr14	GH14I052455	52455031	52456710	0.31	[{'connected_gene': 'TXNDC16', 'score': 11.54}, {'connected_gene': 'PTGER2', 'score': 10.88}, {'connected_gene': 'ERO1A', 'score': 5.71}, {'connected_gene': 'GC14M052143', 'score': 0.44}]
chr14	GH14I052457	52457285	52459366	1.16	[{'connected_gene': 'TXNDC16', 'score': 11.54}, {'connected_gene': 'PTGER2', 'score': 11.03}, {'connected_gene': 'ERO1A', 'score': 5.81}, {'connected_gene': 'GC14M052143', 'score': 0.44}]
chr14	GH14I052551	52551039	52554498	2.31	[{'connected_gene': 'TXNDC16', 'score': 565.8}, {'connected_gene': 'GPR137C', 'score': 556.97}, {'connected_gene': 'GC14P052555', 'score': 550.77}, {'connected_gene': 'GC14P052554', 'score': 550.77}, {'connected_gene': 'RTRAF', 'score': 11.62}, {'connected_gene': 'ERO1A', 'score': 7.22}, {'connected_gene': 'PTGDR', 'score': 1.99}]
chr14	GH14I052538	52538601	52538800	0.2	[{'connected_gene': 'TXNDC16', 'score': 0.39}, {'connected_gene': 'GC14M052143', 'score': 0.17}]
chr14	GH14I052473	52473683	52473832	0.54	[{'connected_gene': 'PTGER2', 'score': 12.08}, {'connected_gene': 'TXNDC16', 'score': 10.31}, {'connected_gene': 'GPR137C', 'score': 10.31}, {'connected_gene': 'GC14M052143', 'score': 0.34}]
chr14	GH14I052311	52311129	52319794	2.38	[{'connected_gene': 'PTGER2', 'score': 572.63}, {'connected_gene': 'GNG2', 'score': 8.35}, {'connected_gene': 'TXNDC16', 'score': 4.94}, {'connected_gene': 'RTRAF', 'score': 4.67}, {'connected_gene': 'GC14P052338', 'score': 0.34}, {'connected_gene': 'GC14M052143', 'score': 0.12}]
chr14	GH14I052324	52324059	52329101	1.47	[{'connected_gene': 'PTGER2', 'score': 24.0}, {'connected_gene': 'GNG2', 'score': 7.96}, {'connected_gene': 'TXNDC16', 'score': 5.33}, {'connected_gene': 'GC14P052338', 'score': 0.39}, {'connected_gene': 'GC14M052143', 'score': 0.13}]
chr14	GH14I052353	52353865	52356446	1.02	[{'connected_gene': 'PTGER2', 'score': 17.29}, {'connected_gene': 'GPR137C', 'score': 4.51}, {'connected_gene': 'TXNDC16', 'score': 4.48}, {'connected_gene': 'GC14P052338', 'score': 0.37}, {'connected_gene': 'GC14M052426', 'score': 0.19}, {'connected_gene': 'GC14M052143', 'score': 0.15}]