PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000339697	[[122764498, 122766324], [122767918, 122768149], [122768265, 122768410], [122772808, 122772899], [122773032, 122773202], [122774914, 122775052], [122775295, 122775375], [122777625, 122777795], [122779664, 122779826], [122792843, 122792967]]	[[122766188, 122766324], [122767918, 122768149], [122768265, 122768410], [122772808, 122772899], [122773032, 122773202], [122774914, 122775052], [122775295, 122775375], [122777625, 122777795], [122779664, 122779826], [122792843, 122792882]]
NM_020755	[[122764492, 122766324], [122767918, 122768149], [122768265, 122768410], [122772808, 122772899], [122773032, 122773202], [122774914, 122775052], [122775295, 122775375], [122777625, 122777795], [122779664, 122779826], [122792843, 122793026]]	[[122766188, 122766324], [122767918, 122768149], [122768265, 122768410], [122772808, 122772899], [122773032, 122773202], [122774914, 122775052], [122775295, 122775375], [122777625, 122777795], [122779664, 122779826], [122792843, 122792882]]

Promoter

Chrom	Start	End	Description
chr6	122792919	122792970	CAGE_peak_1_at_SERINC1_5end
chr6	122792978	122792992	CAGE_peak_2_at_SERINC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I122644	122644821	122646438	0.43	[{'connected_gene': 'SERINC1', 'score': 10.49}, {'connected_gene': 'PKIB', 'score': 5.02}, {'connected_gene': 'ENSG00000272472', 'score': 0.77}, {'connected_gene': 'RN7SL564P', 'score': 0.15}]
chr6	GH06I122620	122620516	122622116	0.71	[{'connected_gene': 'SERINC1', 'score': 10.94}, {'connected_gene': 'ENSG00000272472', 'score': 0.34}, {'connected_gene': 'PIR47029', 'score': 0.31}, {'connected_gene': 'PKIB', 'score': 0.11}]
chr6	GH06I122609	122609390	122611990	1.93	[{'connected_gene': 'PKIB', 'score': 550.12}, {'connected_gene': 'SERINC1', 'score': 10.97}, {'connected_gene': 'HSF2', 'score': 6.2}, {'connected_gene': 'SMPDL3A', 'score': 4.42}, {'connected_gene': 'PIR47029', 'score': 0.39}, {'connected_gene': 'ENSG00000272472', 'score': 0.29}]
chr6	GH06I122470	122470000	122472764	2.21	[{'connected_gene': 'PKIB', 'score': 555.79}, {'connected_gene': 'ENSG00000279114', 'score': 550.77}, {'connected_gene': 'SERINC1', 'score': 550.77}, {'connected_gene': 'HSF2', 'score': 18.04}, {'connected_gene': 'ENSG00000275339', 'score': 0.37}]
chr6	GH06I122467	122467909	122469467	0.46	[{'connected_gene': 'HSF2', 'score': 6.49}, {'connected_gene': 'SERINC1', 'score': 0.77}, {'connected_gene': 'ENSG00000275339', 'score': 0.39}]
chr6	GH06I122448	122448525	122448812	0.34	[{'connected_gene': 'HSF2', 'score': 6.83}, {'connected_gene': 'PKIB', 'score': 1.54}, {'connected_gene': 'ENSG00000279453', 'score': 0.44}, {'connected_gene': 'ENSG00000275339', 'score': 0.44}, {'connected_gene': 'SERINC1', 'score': 0.34}]
chr6	GH06I122446	122446843	122448075	0.31	[{'connected_gene': 'HSF2', 'score': 11.54}, {'connected_gene': 'PKIB', 'score': 5.35}, {'connected_gene': 'ENSG00000279453', 'score': 0.44}, {'connected_gene': 'ENSG00000275339', 'score': 0.44}, {'connected_gene': 'SERINC1', 'score': 0.34}]
chr6	GH06I122455	122455491	122465430	0.64	[{'connected_gene': 'HSF2', 'score': 18.08}, {'connected_gene': 'PKIB', 'score': 5.46}, {'connected_gene': 'ENSG00000275339', 'score': 0.44}, {'connected_gene': 'SERINC1', 'score': 0.39}]
chr6	GH06I122832	122832776	122833585	0.88	[{'connected_gene': 'FABP7', 'score': 12.67}, {'connected_gene': 'SMPDL3A', 'score': 11.22}, {'connected_gene': 'PKIB', 'score': 4.35}, {'connected_gene': 'SERINC1', 'score': 3.86}, {'connected_gene': 'CLVS2', 'score': 2.3}, {'connected_gene': 'GC06M122861', 'score': 0.31}]
chr6	GH06I122759	122759099	122759387	0.54	[{'connected_gene': 'SMPDL3A', 'score': 15.05}, {'connected_gene': 'SERINC1', 'score': 1.69}, {'connected_gene': 'PKIB', 'score': 1.45}, {'connected_gene': 'RN7SL564P', 'score': 0.39}, {'connected_gene': 'FABP7', 'score': 0.34}]
chr6	GH06I122530	122530596	122530705	0.65	[{'connected_gene': 'ENSG00000277408', 'score': 550.77}, {'connected_gene': 'SERINC1', 'score': 11.63}, {'connected_gene': 'PKIB', 'score': 0.22}, {'connected_gene': 'ENSG00000279114', 'score': 0.22}]
chr6	GH06I122451	122451853	122454031	0.2	[{'connected_gene': 'ENSG00000275339', 'score': 550.77}, {'connected_gene': 'HSF2', 'score': 18.11}, {'connected_gene': 'ENSG00000279453', 'score': 0.39}, {'connected_gene': 'SERINC1', 'score': 0.37}]