PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000537256	[[87635440, 87635536], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87730408], [87731445, 87731533]]	None
ENST00000284262	[[87636510, 87637134], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87731762]]	[[87636752, 87637134], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87730266]]
ENST00000563609	[[87687167, 87688621], [87717747, 87717872], [87723251, 87724132], [87730185, 87731748]]	None
ENST00000301008	[[87636492, 87637134], [87637845, 87638233]]	None
NR_073379	[[87635440, 87635536], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87730408], [87731445, 87731762]]	None
NM_020655	[[87636492, 87637134], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87731762]]	[[87636752, 87637134], [87677863, 87678641], [87717747, 87717872], [87723251, 87724132], [87730185, 87730266]]
NM_001271604	[[87636492, 87637134], [87637845, 87638254]]	[[87636752, 87637134], [87637845, 87638024]]
NM_001271605	[[87636492, 87637134], [87637694, 87638254]]	[[87636752, 87637134], [87637694, 87637765]]

Promoter

Chrom	Start	End	Description
chr16	87636085	87636144	CAGE_peak_1_at_JPH3_5end
chr16	87636146	87636190	CAGE_peak_2_at_JPH3_5end
chr16	87636474	87636533	CAGE_peak_3_at_JPH3_5end
chr16	87636569	87636577	CAGE_peak_6_at_JPH3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I087550	87550475	87550624	0.76	[{'connected_gene': 'JPH3', 'score': 11.64}, {'connected_gene': 'FBXO31', 'score': 4.73}, {'connected_gene': 'PIR35253', 'score': 0.29}]
chr16	GH16I087576	87576315	87576504	0.38	[{'connected_gene': 'JPH3', 'score': 12.13}, {'connected_gene': 'KLHDC4', 'score': 11.0}, {'connected_gene': 'MAP1LC3B', 'score': 5.67}, {'connected_gene': 'PIR35253', 'score': 0.22}]
chr16	GH16I087574	87574841	87576049	0.67	[{'connected_gene': 'JPH3', 'score': 12.13}, {'connected_gene': 'KLHDC4', 'score': 11.0}, {'connected_gene': 'PIR35253', 'score': 0.22}]
chr16	GH16I087507	87507084	87508200	0.67	[{'connected_gene': 'JPH3', 'score': 11.54}, {'connected_gene': 'LOC100129215', 'score': 10.61}, {'connected_gene': 'PIR35253', 'score': 0.39}, {'connected_gene': 'LOC101928737', 'score': 0.37}]
chr16	GH16I087570	87570441	87572513	0.98	[{'connected_gene': 'JPH3', 'score': 0.29}, {'connected_gene': 'PIR35253', 'score': 0.23}]
chr16	GH16I087681	87681781	87682611	0.49	[{'connected_gene': 'KLHDC4', 'score': 11.45}, {'connected_gene': 'ENSG00000277504', 'score': 0.77}, {'connected_gene': 'PIR44736', 'score': 0.31}, {'connected_gene': 'JPH3', 'score': 0.18}]
chr16	GH16I087588	87588875	87589024	0.72	[{'connected_gene': 'KLHDC4', 'score': 10.74}, {'connected_gene': 'JPH3', 'score': 0.39}, {'connected_gene': 'PIR35253', 'score': 0.2}]
chr16	GH16I087661	87661600	87661824	1.05	[{'connected_gene': 'KLHDC4', 'score': 5.24}, {'connected_gene': 'PIR44736', 'score': 0.44}, {'connected_gene': 'ENSG00000277504', 'score': 0.34}, {'connected_gene': 'JPH3', 'score': 0.22}]
chr16	GH16I087722	87722645	87726084	1.39	[{'connected_gene': 'KLHDC4', 'score': 26.61}, {'connected_gene': 'ENSG00000260671', 'score': 16.02}, {'connected_gene': 'LOC100129215', 'score': 12.28}, {'connected_gene': 'ENSG00000260121', 'score': 11.41}, {'connected_gene': 'ZC3H18', 'score': 10.46}, {'connected_gene': 'C16orf95', 'score': 5.48}, {'connected_gene': 'ENSG00000260466', 'score': 5.01}, {'connected_gene': 'JPH3', 'score': 2.41}, {'connected_gene': 'FBXO31', 'score': 1.36}, {'connected_gene': 'ZCCHC14', 'score': 1.18}, {'connected_gene': 'LOC105371397', 'score': 0.34}]
chr16	GH16I087697	87697663	87699175	0.56	[{'connected_gene': 'KLHDC4', 'score': 9.09}, {'connected_gene': 'LOC100129215', 'score': 0.77}, {'connected_gene': 'LOC105371397', 'score': 0.77}, {'connected_gene': 'JPH3', 'score': 0.15}]
chr16	GH16I087540	87540345	87542264	1.16	[{'connected_gene': 'ZCCHC14', 'score': 6.2}, {'connected_gene': 'JPH3', 'score': 4.02}, {'connected_gene': 'C16orf95', 'score': 3.69}, {'connected_gene': 'PIR35253', 'score': 0.34}]
chr16	GH16I087580	87580895	87584509	1.11	[{'connected_gene': 'ZC3H18', 'score': 34.22}, {'connected_gene': 'LOC101928659', 'score': 18.26}, {'connected_gene': 'BANP', 'score': 17.8}, {'connected_gene': 'ZCCHC14', 'score': 11.98}, {'connected_gene': 'KLHDC4', 'score': 10.11}, {'connected_gene': 'JPH3', 'score': 0.37}, {'connected_gene': 'PIR35253', 'score': 0.21}]
chr16	GH16I087524	87524101	87529741	0.97	[{'connected_gene': 'LOC101928659', 'score': 28.56}, {'connected_gene': 'MTHFSD', 'score': 20.26}, {'connected_gene': 'PIR35253', 'score': 0.44}, {'connected_gene': 'JPH3', 'score': 0.19}]
chr16	GH16I087635	87635027	87637145	1.12	[{'connected_gene': 'LOC101928659', 'score': 9.82}, {'connected_gene': 'LOC100128882', 'score': 4.55}, {'connected_gene': 'PIR44736', 'score': 0.37}, {'connected_gene': 'ENSG00000269935', 'score': 0.29}, {'connected_gene': 'JPH3', 'score': 0.29}]
chr16	GH16I087620	87620115	87620464	0.31	[{'connected_gene': 'LOC100129215', 'score': 10.4}, {'connected_gene': 'ENSG00000269935', 'score': 0.37}, {'connected_gene': 'JPH3', 'score': 0.37}, {'connected_gene': 'PIR44736', 'score': 0.29}]
chr16	GH16I087554	87554667	87557810	0.99	[{'connected_gene': 'PIR35253', 'score': 0.28}, {'connected_gene': 'JPH3', 'score': 0.25}]
chr16	GH16I087608	87608515	87608664	0.87	[{'connected_gene': 'ENSG00000269935', 'score': 0.44}, {'connected_gene': 'JPH3', 'score': 0.44}, {'connected_gene': 'PIR44736', 'score': 0.25}]
chr16	GH16I087601	87601110	87605223	1.46	[{'connected_gene': 'ENSG00000269935', 'score': 550.77}, {'connected_gene': 'JPH3', 'score': 550.77}, {'connected_gene': 'PIR44736', 'score': 0.23}]
chr16	GH16I087657	87657735	87657924	0.67	[{'connected_gene': 'PIR44736', 'score': 0.77}, {'connected_gene': 'ENSG00000277504', 'score': 0.31}, {'connected_gene': 'JPH3', 'score': 0.22}]
chr16	GH16I087560	87560564	87561644	0.74	[{'connected_gene': 'PIR35253', 'score': 0.26}, {'connected_gene': 'JPH3', 'score': 0.26}]
chr16	GH16I087535	87535882	87537095	0.71	[{'connected_gene': 'ENSG00000131152', 'score': 10.13}, {'connected_gene': 'C16orf95', 'score': 10.12}, {'connected_gene': 'PIR35253', 'score': 0.37}, {'connected_gene': 'JPH3', 'score': 0.2}]
chr16	GH16I087538	87538323	87539251	0.43	[{'connected_gene': 'ENSG00000131152', 'score': 10.04}, {'connected_gene': 'C16orf95', 'score': 10.04}, {'connected_gene': 'PIR35253', 'score': 0.37}, {'connected_gene': 'JPH3', 'score': 0.21}]