PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306730	[[34158427, 34158929], [34159695, 34160056], [34163135, 34163231], [34168125, 34168196], [34295232, 34295410], [34330980, 34331377]]	[[34158813, 34158929], [34159695, 34160056], [34163135, 34163231], [34168125, 34168196], [34295232, 34295410], [34330980, 34331247]]
ENST00000560649	[[34158907, 34158929], [34159695, 34159791], [34163135, 34163231], [34168125, 34168195]]	[[34159779, 34159791], [34163135, 34163231], [34168125, 34168195]]
ENST00000558136	[[34159973, 34160056], [34163135, 34163231], [34168125, 34168196], [34175852, 34175937], [34177821, 34177939]]	None
NM_020371	[[34158427, 34158929], [34159695, 34160056], [34163135, 34163231], [34168125, 34168196], [34295232, 34295410], [34330980, 34331303]]	[[34158813, 34158929], [34159695, 34160056], [34163135, 34163231], [34168125, 34168196], [34295232, 34295410], [34330980, 34331247]]

Promoter

Chrom	Start	End	Description
chr15	34331243	34331429	CAGE_peak_1_at_AVEN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I034116	34116344	34120149	0.49	[{'connected_gene': 'KATNBL1', 'score': 11.13}, {'connected_gene': 'AVEN', 'score': 10.61}, {'connected_gene': 'PGBD4', 'score': 5.69}, {'connected_gene': 'PIR44117', 'score': 0.39}]
chr15	GH15I034055	34055217	34057854	0.58	[{'connected_gene': 'AVEN', 'score': 12.37}, {'connected_gene': 'KATNBL1', 'score': 11.74}, {'connected_gene': 'EMC4', 'score': 10.94}, {'connected_gene': 'GC15M034069', 'score': 0.39}, {'connected_gene': 'ENSG00000259505', 'score': 0.2}, {'connected_gene': 'CHRM5', 'score': 0.17}]
chr15	GH15I034046	34046428	34049829	0.97	[{'connected_gene': 'AVEN', 'score': 16.07}, {'connected_gene': 'CHRM5', 'score': 8.86}, {'connected_gene': 'GC15M034069', 'score': 0.34}, {'connected_gene': 'ENSG00000259505', 'score': 0.22}]
chr15	GH15I034037	34037800	34040580	1.93	[{'connected_gene': 'AVEN', 'score': 564.82}, {'connected_gene': 'GC15M034069', 'score': 0.29}, {'connected_gene': 'ENSG00000259505', 'score': 0.25}, {'connected_gene': 'CHRM5', 'score': 0.19}]
chr15	GH15I034182	34182478	34183993	0.6	[{'connected_gene': 'NOP10', 'score': 17.71}, {'connected_gene': 'KATNBL1', 'score': 17.47}, {'connected_gene': 'AVEN', 'score': 10.79}, {'connected_gene': 'PIR44117', 'score': 0.18}]
chr15	GH15I033984	33984753	33986132	0.84	[{'connected_gene': 'NUTM1', 'score': 21.61}, {'connected_gene': 'CHRM5', 'score': 12.73}, {'connected_gene': 'AVEN', 'score': 11.28}, {'connected_gene': 'ENSG00000259505', 'score': 0.44}, {'connected_gene': 'ENSG00000278472', 'score': 0.39}]
chr15	GH15I034100	34100408	34103037	2.05	[{'connected_gene': 'PGBD4', 'score': 557.14}, {'connected_gene': 'EMC7', 'score': 550.77}, {'connected_gene': 'AVEN', 'score': 20.26}, {'connected_gene': 'KATNBL1', 'score': 11.05}, {'connected_gene': 'HNRNPLP2', 'score': 11.04}, {'connected_gene': 'EMC4', 'score': 10.73}, {'connected_gene': 'RPL32P2', 'score': 0.37}]
chr15	GH15I034000	34000191	34000250	0.5	[{'connected_gene': 'CHRM5', 'score': 550.29}, {'connected_gene': 'AVEN', 'score': 10.85}, {'connected_gene': 'ENSG00000259505', 'score': 0.44}, {'connected_gene': 'GC15M034069', 'score': 0.2}]
chr15	GH15I033956	33956040	33956189	0.64	[{'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'GC15M033869', 'score': 0.17}, {'connected_gene': 'AVEN', 'score': 0.13}]
chr15	GH15I034011	34011229	34012257	0.2	[{'connected_gene': 'CHRM5', 'score': 8.38}, {'connected_gene': 'ENSG00000259505', 'score': 0.34}, {'connected_gene': 'GC15M034069', 'score': 0.22}, {'connected_gene': 'AVEN', 'score': 0.21}]
chr15	GH15I033957	33956520	33956669	0.57	[{'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'GC15M033869', 'score': 0.17}, {'connected_gene': 'AVEN', 'score': 0.13}]
chr15	GH15I033968	33968839	33968898	0.7	[{'connected_gene': 'CHRM5', 'score': 550.77}, {'connected_gene': 'ENSG00000278472', 'score': 0.77}, {'connected_gene': 'AVEN', 'score': 0.14}]
chr15	GH15I033866	33866440	33866689	0.59	[{'connected_gene': 'LOC101929988', 'score': 550.77}, {'connected_gene': 'ENSG00000259287', 'score': 550.77}, {'connected_gene': 'GC15M033869', 'score': 0.77}, {'connected_gene': 'AVEN', 'score': 0.08}]
chr15	GH15I033867	33866200	33866369	0.52	[{'connected_gene': 'LOC101929988', 'score': 550.77}, {'connected_gene': 'ENSG00000259287', 'score': 550.77}, {'connected_gene': 'GC15M033869', 'score': 0.77}, {'connected_gene': 'AVEN', 'score': 0.08}]
chr15	GH15I033720	33720500	33723138	0.94	[{'connected_gene': 'GC15P033723', 'score': 550.77}, {'connected_gene': 'ENSG00000200008', 'score': 550.77}, {'connected_gene': 'RYR3', 'score': 10.24}, {'connected_gene': 'LOC101928134', 'score': 6.51}, {'connected_gene': 'AVEN', 'score': 4.38}, {'connected_gene': 'C1QBPP3', 'score': 0.31}]
chr15	GH15I033976	33976417	33978229	0.2	[{'connected_gene': 'ENSG00000278472', 'score': 0.77}, {'connected_gene': 'CHRM5', 'score': 0.44}, {'connected_gene': 'ENSG00000259505', 'score': 0.39}, {'connected_gene': 'AVEN', 'score': 0.15}]
chr15	GH15I033915	33915520	33916549	0.72	[{'connected_gene': 'GC15M033869', 'score': 0.25}, {'connected_gene': 'CHRM5', 'score': 0.23}, {'connected_gene': 'AVEN', 'score': 0.1}]
chr15	GH15I033991	33991213	33992483	0.31	[{'connected_gene': 'ENSG00000259505', 'score': 550.77}, {'connected_gene': 'CHRM5', 'score': 11.44}, {'connected_gene': 'AVEN', 'score': 10.88}, {'connected_gene': 'GC15M034069', 'score': 0.18}]
chr15	GH15I033979	33979276	33980745	0.38	[{'connected_gene': 'ENSG00000278472', 'score': 0.44}, {'connected_gene': 'CHRM5', 'score': 0.39}, {'connected_gene': 'ENSG00000259505', 'score': 0.39}, {'connected_gene': 'AVEN', 'score': 0.16}]
chr15	GH15I033971	33971853	33972161	0.59	[{'connected_gene': 'ENSG00000278472', 'score': 550.77}, {'connected_gene': 'CHRM5', 'score': 6.51}, {'connected_gene': 'NUTM1', 'score': 2.54}, {'connected_gene': 'AVEN', 'score': 0.15}]