PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000270586	[[4699438, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701574, 4701790]]	[[4699489, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701574, 4701717]]
ENST00000575079	[[4699455, 4699591], [4700022, 4700469]]	None
ENST00000571309	[[4699498, 4699591], [4700022, 4700090], [4700732, 4700864], [4701011, 4701106], [4701303, 4701448], [4701574, 4701624]]	[[4699498, 4699591], [4700022, 4700090], [4700732, 4700864], [4701011, 4701027]]
ENST00000575643	[[4700978, 4701448], [4701574, 4701770]]	None
NM_002798	[[4699438, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701574, 4701798]]	[[4699489, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701574, 4701717]]
NM_001270481	[[4699438, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701554, 4701798]]	[[4699489, 4699591], [4700022, 4700090], [4700732, 4700864], [4700976, 4701106], [4701303, 4701448], [4701554, 4701619]]

Promoter

Chrom	Start	End	Description
chr17	4699451	4699490	CAGE_peak_1_at_PSMB6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I004795	4795409	4797075	2.04	[{'connected_gene': 'PSMB6', 'score': 550.77}, {'connected_gene': 'ZNF594', 'score': 18.14}, {'connected_gene': 'PLD2', 'score': 16.78}, {'connected_gene': 'LOC100130950', 'score': 16.45}, {'connected_gene': 'ENSG00000262165', 'score': 15.73}, {'connected_gene': 'LOC101927979', 'score': 14.95}, {'connected_gene': 'ZZEF1', 'score': 10.63}, {'connected_gene': 'PELP1', 'score': 10.01}, {'connected_gene': 'C17orf107', 'score': 4.73}, {'connected_gene': 'GC17M004737', 'score': 0.28}]
chr17	GH17I004786	4786093	4791385	2.07	[{'connected_gene': 'VMO1', 'score': 564.08}, {'connected_gene': 'ENSG00000280254', 'score': 550.77}, {'connected_gene': 'GLTPD2', 'score': 550.77}, {'connected_gene': 'ZNF594', 'score': 18.14}, {'connected_gene': 'LOC100130950', 'score': 16.45}, {'connected_gene': 'PELP1', 'score': 10.03}, {'connected_gene': 'RNF167', 'score': 5.81}, {'connected_gene': 'PSMB6', 'score': 0.44}, {'connected_gene': 'GC17M004737', 'score': 0.26}]
chr17	GH17I004842	4842801	4846199	1.09	[{'connected_gene': 'CHRNE', 'score': 36.89}, {'connected_gene': 'ARRB2', 'score': 19.83}, {'connected_gene': 'ZMYND15', 'score': 16.86}, {'connected_gene': 'CXCL16', 'score': 13.78}, {'connected_gene': 'C17orf107', 'score': 13.68}, {'connected_gene': 'PLD2', 'score': 12.83}, {'connected_gene': 'ENO3', 'score': 12.74}, {'connected_gene': 'PSMB6', 'score': 11.92}, {'connected_gene': 'RPS12P29', 'score': 11.7}, {'connected_gene': 'VMO1', 'score': 11.69}, {'connected_gene': 'GLTPD2', 'score': 11.69}, {'connected_gene': 'PELP1', 'score': 11.69}, {'connected_gene': 'LOC101559451', 'score': 11.69}, {'connected_gene': 'SCIMP', 'score': 2.9}, {'connected_gene': 'MINK1', 'score': 2.67}, {'connected_gene': 'ATP6V0CP1', 'score': 0.39}]
chr17	GH17I004801	4801202	4801581	0.24	[{'connected_gene': 'ENSG00000262165', 'score': 17.19}, {'connected_gene': 'MINK1', 'score': 11.62}, {'connected_gene': 'ZNF232', 'score': 3.69}, {'connected_gene': 'KIF1C', 'score': 1.35}, {'connected_gene': 'PSMB6', 'score': 0.44}, {'connected_gene': 'GC17M004737', 'score': 0.29}]