PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000482640	[[158363610, 158363998], [158384800, 158384863], [158386784, 158386921], [158387221, 158387382]]	[[158363887, 158363998], [158384800, 158384863], [158386784, 158386921], [158387221, 158387382]]
ENST00000264265	[[158384202, 158384533], [158384800, 158384863], [158386784, 158386921], [158387221, 158387399], [158388745, 158388808], [158390138, 158390482]]	[[158384434, 158384533], [158384800, 158384863], [158386784, 158386921], [158387221, 158387399], [158388745, 158388808], [158390138, 158390267]]
NM_020169	[[158384202, 158384533], [158384800, 158384863], [158386784, 158386921], [158387221, 158387399], [158388745, 158388808], [158390138, 158390482]]	[[158384434, 158384533], [158384800, 158384863], [158386784, 158386921], [158387221, 158387399], [158388745, 158388808], [158390138, 158390267]]

Promoter

Chrom	Start	End	Description
chr3	158390171	158390180	CAGE_peak_3_at_LXN_5end
chr3	158390282	158390521	CAGE_peak_1_at_LXN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I158700	158700232	158704538	0.72	[{'connected_gene': 'GFM1', 'score': 27.3}, {'connected_gene': 'ENSG00000240207', 'score': 21.64}, {'connected_gene': 'MFSD1', 'score': 19.07}, {'connected_gene': 'LXN', 'score': 11.77}, {'connected_gene': 'RARRES1', 'score': 11.51}, {'connected_gene': 'MLF1', 'score': 10.04}, {'connected_gene': 'ENSG00000272440', 'score': 0.44}, {'connected_gene': 'PIR52872', 'score': 0.39}]
chr3	GH03I158683	158683712	158683861	0.31	[{'connected_gene': 'GFM1', 'score': 22.35}, {'connected_gene': 'ENSG00000272087', 'score': 0.44}, {'connected_gene': 'LXN', 'score': 0.39}]
chr3	GH03I158658	158658714	158661710	0.72	[{'connected_gene': 'GFM1', 'score': 27.47}, {'connected_gene': 'MLF1', 'score': 21.26}, {'connected_gene': 'ENSG00000240207', 'score': 19.93}, {'connected_gene': 'RARRES1', 'score': 11.56}, {'connected_gene': 'MFSD1', 'score': 11.56}, {'connected_gene': 'LXN', 'score': 0.39}]
chr3	GH03I158668	158668632	158668801	0.2	[{'connected_gene': 'GFM1', 'score': 27.44}, {'connected_gene': 'MLF1', 'score': 5.48}, {'connected_gene': 'LXN', 'score': 0.77}]
chr3	GH03I158684	158684792	158685937	0.38	[{'connected_gene': 'GFM1', 'score': 27.37}, {'connected_gene': 'MLF1', 'score': 21.49}, {'connected_gene': 'ENSG00000240207', 'score': 8.62}, {'connected_gene': 'ENSG00000272087', 'score': 0.44}, {'connected_gene': 'LXN', 'score': 0.39}]
chr3	GH03I158643	158643860	158645655	2.1	[{'connected_gene': 'GFM1', 'score': 577.87}, {'connected_gene': 'MLF1', 'score': 21.28}, {'connected_gene': 'ENSG00000271778', 'score': 13.01}, {'connected_gene': 'ENSG00000272440', 'score': 11.65}, {'connected_gene': 'ENSG00000240207', 'score': 10.12}, {'connected_gene': 'LXN', 'score': 0.31}]
chr3	GH03I158789	158789601	158789801	0.82	[{'connected_gene': 'RARRES1', 'score': 12.95}, {'connected_gene': 'MFSD1', 'score': 12.95}, {'connected_gene': 'ENSG00000240207', 'score': 12.95}, {'connected_gene': 'LXN', 'score': 10.48}, {'connected_gene': 'ENSG00000271778', 'score': 0.44}, {'connected_gene': 'ENSG00000272247', 'score': 0.39}]
chr3	GH03I158669	158669945	158673505	1.85	[{'connected_gene': 'LXN', 'score': 555.86}, {'connected_gene': 'GFM1', 'score': 27.42}, {'connected_gene': 'MLF1', 'score': 21.24}, {'connected_gene': 'ENSG00000240207', 'score': 10.16}]
chr3	GH03I159418	159418020	159419465	0.49	[{'connected_gene': 'LXN', 'score': 3.88}, {'connected_gene': 'RPS2P19', 'score': 0.29}, {'connected_gene': 'SCHIP1', 'score': 0.11}, {'connected_gene': 'LOC100420738', 'score': 0.06}, {'connected_gene': 'IQCJ-SCHIP1', 'score': 0.05}]
chr3	GH03I158109	158109450	158111294	2.1	[{'connected_gene': 'RSRC1', 'score': 560.65}, {'connected_gene': 'CCNL1', 'score': 15.76}, {'connected_gene': 'LXN', 'score': 10.15}, {'connected_gene': 'SHOX2', 'score': 0.77}, {'connected_gene': 'GC03M158221', 'score': 0.14}]
chr3	GH03I158792	158792034	158793580	0.73	[{'connected_gene': 'MLF1', 'score': 21.9}, {'connected_gene': 'ENSG00000240207', 'score': 11.89}, {'connected_gene': 'RARRES1', 'score': 11.89}, {'connected_gene': 'MFSD1', 'score': 11.89}, {'connected_gene': 'LXN', 'score': 11.41}, {'connected_gene': 'GFM1', 'score': 11.19}, {'connected_gene': 'LOC100996447', 'score': 9.78}, {'connected_gene': 'ENSG00000271778', 'score': 7.91}, {'connected_gene': 'ENSG00000272247', 'score': 0.44}]
chr3	GH03I158715	158715760	158728541	1.7	[{'connected_gene': 'ENSG00000240207', 'score': 31.11}, {'connected_gene': 'GFM1', 'score': 22.63}, {'connected_gene': 'MLF1', 'score': 19.47}, {'connected_gene': 'LXN', 'score': 11.03}, {'connected_gene': 'MFSD1', 'score': 10.58}, {'connected_gene': 'ENSG00000272247', 'score': 3.96}, {'connected_gene': 'PIR52872', 'score': 0.44}, {'connected_gene': 'RARRES1', 'score': 0.39}]
chr3	GH03I158709	158709071	158714400	1.37	[{'connected_gene': 'ENSG00000240207', 'score': 44.07}, {'connected_gene': 'GFM1', 'score': 22.81}, {'connected_gene': 'MLF1', 'score': 17.51}, {'connected_gene': 'LXN', 'score': 16.57}, {'connected_gene': 'RARRES1', 'score': 12.75}, {'connected_gene': 'MFSD1', 'score': 12.75}, {'connected_gene': 'ENSG00000272247', 'score': 5.06}, {'connected_gene': 'PIR52872', 'score': 0.77}, {'connected_gene': 'ENSG00000272440', 'score': 0.37}]
chr3	GH03I158791	158791001	158791723	1.22	[{'connected_gene': 'ENSG00000240207', 'score': 11.9}, {'connected_gene': 'RARRES1', 'score': 11.9}, {'connected_gene': 'MFSD1', 'score': 11.9}, {'connected_gene': 'LXN', 'score': 11.41}, {'connected_gene': 'GFM1', 'score': 11.19}, {'connected_gene': 'MLF1', 'score': 9.78}, {'connected_gene': 'LOC100996447', 'score': 9.78}, {'connected_gene': 'ENSG00000271778', 'score': 0.44}, {'connected_gene': 'ENSG00000272247', 'score': 0.39}]
chr3	GH03I158788	158788238	158789321	0.66	[{'connected_gene': 'ENSG00000271778', 'score': 16.58}, {'connected_gene': 'RARRES1', 'score': 12.95}, {'connected_gene': 'MFSD1', 'score': 12.95}, {'connected_gene': 'ENSG00000240207', 'score': 12.95}, {'connected_gene': 'LXN', 'score': 10.48}, {'connected_gene': 'GFM1', 'score': 7.0}, {'connected_gene': 'ENSG00000272247', 'score': 0.39}]
chr3	GH03I158767	158767381	158775583	1.92	[{'connected_gene': 'ENSG00000240207', 'score': 22.94}, {'connected_gene': 'ENSG00000271778', 'score': 16.94}, {'connected_gene': 'RARRES1', 'score': 12.62}, {'connected_gene': 'MFSD1', 'score': 12.62}, {'connected_gene': 'MLF1', 'score': 12.38}, {'connected_gene': 'ENSG00000272247', 'score': 11.81}, {'connected_gene': 'GFM1', 'score': 7.02}, {'connected_gene': 'LXN', 'score': 6.64}, {'connected_gene': 'PIR51214', 'score': 0.77}, {'connected_gene': 'ENSG00000243675', 'score': 0.44}, {'connected_gene': 'LOC100287290', 'score': 0.28}]
chr3	GH03I158781	158781228	158782884	0.7	[{'connected_gene': 'ENSG00000271778', 'score': 566.91}, {'connected_gene': 'MLF1', 'score': 14.02}, {'connected_gene': 'ENSG00000240207', 'score': 11.78}, {'connected_gene': 'RARRES1', 'score': 11.78}, {'connected_gene': 'MFSD1', 'score': 11.78}, {'connected_gene': 'LXN', 'score': 10.73}, {'connected_gene': 'PIR51214', 'score': 0.44}, {'connected_gene': 'LOC100287290', 'score': 0.25}]