PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000405312	[[43696853, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43708037, 43708403], [43709624, 43709926]]	[[43697523, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43708037, 43708403], [43709624, 43709688]]
ENST00000433626	[[43696862, 43697540], [43698491, 43698746], [43699146, 43699425], [43708037, 43708403], [43709624, 43709820]]	[[43697523, 43697540], [43698491, 43698746], [43699146, 43699425], [43708037, 43708403], [43709624, 43709688]]
ENST00000490769	[[43696889, 43697540], [43698491, 43699038]]	None
ENST00000244295	[[43696902, 43697540], [43698491, 43698746], [43702148, 43702427], [43708037, 43708403], [43709624, 43709715]]	[[43697523, 43697540], [43698491, 43698746], [43702148, 43702427], [43708037, 43708403], [43709624, 43709688]]
ENST00000597374	[[43697757, 43697968], [43698491, 43698746], [43699146, 43699425], [43702148, 43702231]]	[[43697810, 43697968], [43698491, 43698746], [43699146, 43699425], [43702148, 43702231]]
ENST00000597349	[[43698106, 43698746], [43699146, 43699301]]	None
ENST00000596907	[[43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43709624, 43709787]]	[[43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43709624, 43709688]]
ENST00000599391	[[43698549, 43698746], [43702148, 43702427], [43709624, 43709703]]	[[43698549, 43698746], [43702148, 43702427], [43709624, 43709688]]
ENST00000601041	[[43698557, 43698746], [43699146, 43699425], [43702148, 43702282], [43709624, 43709785]]	[[43702187, 43702282], [43709624, 43709688]]
ENST00000599746	[[43698660, 43698746], [43699146, 43699425], [43708037, 43708403]]	[[43698660, 43698746], [43699146, 43699425], [43708037, 43708403]]
ENST00000595949	[[43699150, 43699425], [43702148, 43702427], [43702749, 43703089], [43709624, 43709764]]	[[43703030, 43703089], [43709624, 43709688]]
ENST00000599371	[[43700609, 43700979], [43702148, 43702426]]	[[43700968, 43700979], [43702148, 43702426]]
ENST00000495316	[[43701895, 43702427], [43708037, 43708203]]	None
ENST00000596199	[[43702066, 43702427], [43709624, 43709790]]	None
ENST00000451895	[[43702148, 43702427], [43708037, 43708403], [43708914, 43709099], [43709624, 43709790]]	[[43702148, 43702427], [43708037, 43708403], [43708914, 43709026]]
ENST00000600572	[[43702409, 43702427], [43708037, 43708403], [43708624, 43708766]]	[[43702409, 43702427], [43708037, 43708254]]
ENST00000597912	[[43707240, 43708403], [43710320, 43711451]]	None
NM_002780	[[43696853, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43708037, 43708403], [43709624, 43709926]]	[[43697523, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43708037, 43708403], [43709624, 43709688]]
NM_213633	[[43696853, 43697540], [43698491, 43698746], [43702148, 43702427], [43708037, 43708403], [43709624, 43709926]]	[[43697523, 43697540], [43698491, 43698746], [43702148, 43702427], [43708037, 43708403], [43709624, 43709688]]
NM_001276495	[[43696853, 43697540], [43698491, 43698746], [43699146, 43699425], [43708037, 43708403], [43709624, 43709926]]	[[43697523, 43697540], [43698491, 43698746], [43699146, 43699425], [43708037, 43708403], [43709624, 43709688]]
NM_001316339	[[43696853, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43709624, 43709926]]	[[43697523, 43697540], [43698491, 43698746], [43699146, 43699425], [43702148, 43702427], [43709624, 43709688]]

Promoter

Chrom	Start	End	Description
chr19	43698587	43698607	CAGE_peak_3_at_PSG4_5end
chr19	43698658	43698695	CAGE_peak_6_at_PSG4_5end
chr19	43702360	43702371	CAGE_peak_8_at_PSG4_5end
chr19	43708254	43708276	CAGE_peak_7_at_PSG4_5end
chr19	43708378	43708400	CAGE_peak_5_at_PSG4_5end
chr19	43709748	43709760	CAGE_peak_2_at_PSG4_5end
chr19	43709772	43709796	CAGE_peak_1_at_PSG4_5end
chr19	43709817	43709825	CAGE_peak_4_at_PSG4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I043077	43077456	43080567	0.72	[{'connected_gene': 'ZNF45', 'score': 16.11}, {'connected_gene': 'ZNF155', 'score': 13.16}, {'connected_gene': 'ZNF526', 'score': 12.78}, {'connected_gene': 'PSG4', 'score': 11.0}, {'connected_gene': 'ZNF284', 'score': 10.45}, {'connected_gene': 'ENSG00000231412', 'score': 6.18}, {'connected_gene': 'PSG2', 'score': 0.77}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.26}, {'connected_gene': 'ENSG00000282943', 'score': 0.15}, {'connected_gene': 'PSG5', 'score': 0.14}]
chr19	GH19I043119	43119189	43121192	0.63	[{'connected_gene': 'ZNF45', 'score': 27.08}, {'connected_gene': 'ZNF526', 'score': 21.03}, {'connected_gene': 'ZNF224', 'score': 15.39}, {'connected_gene': 'ZNF225', 'score': 14.19}, {'connected_gene': 'ZNF155', 'score': 13.17}, {'connected_gene': 'PSG4', 'score': 11.53}, {'connected_gene': 'XRCC1', 'score': 10.78}, {'connected_gene': 'ZNF284', 'score': 10.45}, {'connected_gene': 'CD177', 'score': 4.34}, {'connected_gene': 'GC19P043117', 'score': 0.77}, {'connected_gene': 'ENSG00000227606', 'score': 0.29}, {'connected_gene': 'PSG5', 'score': 0.2}, {'connected_gene': 'GC19P043035', 'score': 0.17}, {'connected_gene': 'ENSG00000282943', 'score': 0.11}]
chr19	GH19I043263	43263938	43269598	1.58	[{'connected_gene': 'PSG9', 'score': 550.77}, {'connected_gene': 'PSG4', 'score': 24.06}, {'connected_gene': 'LOC100505715', 'score': 15.85}, {'connected_gene': 'ZNF428', 'score': 13.66}, {'connected_gene': 'ZNF575', 'score': 13.43}, {'connected_gene': 'LOC100379224', 'score': 12.64}, {'connected_gene': 'MEGF8', 'score': 12.24}, {'connected_gene': 'ZNF404', 'score': 11.62}, {'connected_gene': 'ZNF576', 'score': 11.3}, {'connected_gene': 'PSG5', 'score': 11.15}, {'connected_gene': 'IRGQ', 'score': 9.89}, {'connected_gene': 'ENSG00000231412', 'score': 8.21}, {'connected_gene': 'CEACAMP10', 'score': 0.37}, {'connected_gene': 'LOC284344', 'score': 0.37}]
chr19	GH19I043180	43180897	43187276	1.57	[{'connected_gene': 'PSG5', 'score': 566.96}, {'connected_gene': 'PSG4', 'score': 52.75}, {'connected_gene': 'ZNF45', 'score': 38.42}, {'connected_gene': 'ZNF225', 'score': 35.58}, {'connected_gene': 'ZNF283', 'score': 26.55}, {'connected_gene': 'ZNF155', 'score': 23.04}, {'connected_gene': 'ZNF221', 'score': 22.86}, {'connected_gene': 'ZNF223', 'score': 20.95}, {'connected_gene': 'ZNF226', 'score': 20.27}, {'connected_gene': 'ZNF234', 'score': 19.53}, {'connected_gene': 'ZNF576', 'score': 13.73}, {'connected_gene': 'ZNF224', 'score': 13.68}, {'connected_gene': 'ZNF284', 'score': 11.77}, {'connected_gene': 'ZNF526', 'score': 10.82}, {'connected_gene': 'PINLYP', 'score': 10.73}, {'connected_gene': 'IRGQ', 'score': 9.96}, {'connected_gene': 'ENSG00000231412', 'score': 6.78}, {'connected_gene': 'LOC100421300', 'score': 0.77}]
chr19	GH19I043200	43200105	43206293	1.6	[{'connected_gene': 'PSG4', 'score': 607.12}, {'connected_gene': 'ZNF223', 'score': 49.22}, {'connected_gene': 'ZNF576', 'score': 48.39}, {'connected_gene': 'ZNF221', 'score': 45.25}, {'connected_gene': 'ZNF225', 'score': 42.47}, {'connected_gene': 'ZNF283', 'score': 42.0}, {'connected_gene': 'ZNF226', 'score': 40.82}, {'connected_gene': 'ZNF45', 'score': 33.68}, {'connected_gene': 'LOC101928063', 'score': 23.4}, {'connected_gene': 'ENSG00000267191', 'score': 23.23}, {'connected_gene': 'ZNF284', 'score': 19.87}, {'connected_gene': 'ZNF224', 'score': 13.68}, {'connected_gene': 'ZNF234', 'score': 11.46}, {'connected_gene': 'ZNF155', 'score': 11.23}, {'connected_gene': 'PINLYP', 'score': 10.74}, {'connected_gene': 'ZNF222', 'score': 10.56}, {'connected_gene': 'ZNF404', 'score': 10.52}, {'connected_gene': 'IRGQ', 'score': 9.96}, {'connected_gene': 'PSG5', 'score': 6.41}, {'connected_gene': 'ENSG00000231412', 'score': 6.07}]
chr19	GH19I043020	43020658	43024360	1.17	[{'connected_gene': 'PSG4', 'score': 16.51}, {'connected_gene': 'ENSG00000231412', 'score': 6.31}, {'connected_gene': 'GC19M043001', 'score': 0.77}, {'connected_gene': 'PSG11', 'score': 0.77}, {'connected_gene': 'ENSG00000282943', 'score': 0.25}]
chr19	GH19I043149	43149969	43150138	0.31	[{'connected_gene': 'PSG4', 'score': 10.14}, {'connected_gene': 'ENSG00000227606', 'score': 0.77}, {'connected_gene': 'GC19P043117', 'score': 0.29}, {'connected_gene': 'PSG5', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.13}, {'connected_gene': 'ENSG00000282943', 'score': 0.09}]
chr19	GH19I043147	43147630	43149552	0.43	[{'connected_gene': 'PSG4', 'score': 48.35}, {'connected_gene': 'PSG5', 'score': 10.64}, {'connected_gene': 'ENSG00000227606', 'score': 0.77}, {'connected_gene': 'GC19P043117', 'score': 0.29}, {'connected_gene': 'GC19P043035', 'score': 0.14}, {'connected_gene': 'ENSG00000282943', 'score': 0.09}]
chr19	GH19I043061	43061449	43061678	0.2	[{'connected_gene': 'PSG4', 'score': 5.33}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]
chr19	GH19I042930	42930718	42935654	0.88	[{'connected_gene': 'PSG4', 'score': 7.29}, {'connected_gene': 'PAFAH1B3', 'score': 5.56}, {'connected_gene': 'PHLDB3', 'score': 4.59}, {'connected_gene': 'PSG7', 'score': 0.77}, {'connected_gene': 'PSG6', 'score': 0.39}]
chr19	GH19I042896	42896913	42899461	0.49	[{'connected_gene': 'PSG4', 'score': 4.78}, {'connected_gene': 'PSG1', 'score': 0.37}, {'connected_gene': 'PSG6', 'score': 0.34}]
chr19	GH19I042830	42830909	42834093	0.74	[{'connected_gene': 'PSG4', 'score': 5.36}, {'connected_gene': 'ENSG00000231412', 'score': 4.28}, {'connected_gene': 'GC19P042828', 'score': 0.77}, {'connected_gene': 'PSG8', 'score': 0.34}]
chr19	GH19I042874	42874129	42877976	1.03	[{'connected_gene': 'PSG4', 'score': 5.17}, {'connected_gene': 'ENSG00000231412', 'score': 5.17}, {'connected_gene': 'MEGF8', 'score': 4.31}, {'connected_gene': 'PSG5', 'score': 2.02}, {'connected_gene': 'GC19P042872', 'score': 0.77}, {'connected_gene': 'PSG1', 'score': 0.77}]
chr19	GH19I043004	43004869	43005118	0.2	[{'connected_gene': 'PSG4', 'score': 8.56}, {'connected_gene': 'GC19M043001', 'score': 0.39}, {'connected_gene': 'GC19M042970', 'score': 0.37}, {'connected_gene': 'ENSG00000282943', 'score': 0.31}]
chr19	GH19I043005	43005469	43006300	0.2	[{'connected_gene': 'PSG4', 'score': 8.67}, {'connected_gene': 'GC19M043001', 'score': 0.39}, {'connected_gene': 'GC19M042970', 'score': 0.34}, {'connected_gene': 'ENSG00000282943', 'score': 0.31}]
chr19	GH19I043082	43082658	43082717	0.68	[{'connected_gene': 'PSG2', 'score': 550.77}, {'connected_gene': 'PSG4', 'score': 9.7}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.25}, {'connected_gene': 'PSG5', 'score': 0.15}, {'connected_gene': 'ENSG00000282943', 'score': 0.14}]
chr19	GH19I042849	42849760	42854049	1.16	[{'connected_gene': 'ZNF526', 'score': 12.78}, {'connected_gene': 'PSG4', 'score': 5.55}, {'connected_gene': 'ENSG00000231412', 'score': 4.65}, {'connected_gene': 'MEGF8', 'score': 4.05}, {'connected_gene': 'PSG10P', 'score': 0.77}, {'connected_gene': 'PSG8', 'score': 0.77}, {'connected_gene': 'GC19P042828', 'score': 0.34}]
chr19	GH19I042819	42819124	42821304	0.6	[{'connected_gene': 'PSG8-AS1', 'score': 550.77}, {'connected_gene': 'ZNF526', 'score': 17.32}, {'connected_gene': 'XRCC1', 'score': 10.61}, {'connected_gene': 'ZNF574', 'score': 9.85}, {'connected_gene': 'PSG4', 'score': 5.39}, {'connected_gene': 'CEACAMP6', 'score': 0.29}, {'connected_gene': 'PSG8', 'score': 0.28}]
chr19	GH19I043126	43126596	43130222	0.43	[{'connected_gene': 'ENSG00000231412', 'score': 7.6}, {'connected_gene': 'PSG4', 'score': 6.91}, {'connected_gene': 'PSG5', 'score': 4.61}, {'connected_gene': 'GC19P043117', 'score': 0.39}, {'connected_gene': 'ENSG00000227606', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.16}, {'connected_gene': 'ENSG00000282943', 'score': 0.1}]
chr19	GH19I043059	43059829	43061384	0.2	[{'connected_gene': 'ENSG00000231412', 'score': 5.76}, {'connected_gene': 'PSG4', 'score': 5.72}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]