PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309166	[[9002122, 9005107], [9005421, 9005516], [9005618, 9005671], [9007257, 9007397], [9009094, 9009177], [9009664, 9009829], [9025308, 9025596]]	[[9005091, 9005107], [9005421, 9005516], [9005618, 9005671], [9007257, 9007397], [9009094, 9009177], [9009664, 9009829], [9025308, 9025482]]
ENST00000534759	[[9004105, 9004545], [9005421, 9005516], [9005618, 9005650]]	[[9004505, 9004545], [9005421, 9005516], [9005618, 9005650]]
ENST00000531142	[[9005064, 9005516], [9005618, 9005671], [9007257, 9007303]]	[[9005417, 9005516], [9005618, 9005671], [9007257, 9007303]]
ENST00000531090	[[9005125, 9005516], [9005618, 9005671], [9009094, 9009177], [9009664, 9009829], [9025308, 9025596]]	[[9005667, 9005671], [9009094, 9009177], [9009664, 9009829], [9025308, 9025482]]
ENST00000525100	[[9007317, 9007397], [9009094, 9009177], [9009664, 9009808], [9025308, 9025548]]	[[9007317, 9007397], [9009094, 9009177], [9009664, 9009808], [9025308, 9025482]]
NM_020645	[[9002122, 9005107], [9005421, 9005516], [9005618, 9005671], [9007257, 9007397], [9009094, 9009177], [9009664, 9009829], [9025308, 9025596]]	[[9005091, 9005107], [9005421, 9005516], [9005618, 9005671], [9007257, 9007397], [9009094, 9009177], [9009664, 9009829], [9025308, 9025482]]

Promoter

Chrom	Start	End	Description
chr11	9025541	9025555	CAGE_peak_1_at_NRIP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I009136	9136897	9140731	1.1	[{'connected_gene': 'SCUBE2', 'score': 562.59}, {'connected_gene': 'SNORA3B', 'score': 14.9}, {'connected_gene': 'LOC105376541', 'score': 11.48}, {'connected_gene': 'NRIP3', 'score': 11.48}, {'connected_gene': 'ZNF143', 'score': 11.38}, {'connected_gene': 'TMEM41B', 'score': 6.37}, {'connected_gene': 'DENND5A', 'score': 4.89}, {'connected_gene': 'GC11M009222', 'score': 0.18}]
chr11	GH11I009001	9001562	9002441	1.06	[{'connected_gene': 'NRIP3', 'score': 23.67}, {'connected_gene': 'AKIP1', 'score': 21.51}, {'connected_gene': 'SCUBE2', 'score': 19.61}, {'connected_gene': 'DENND5A', 'score': 14.76}, {'connected_gene': 'ZNF143', 'score': 5.53}, {'connected_gene': 'TMEM9B', 'score': 2.23}, {'connected_gene': 'IPO7', 'score': 1.53}, {'connected_gene': 'GC11P008977', 'score': 0.34}]
chr11	GH11I009061	9061970	9062061	0.4	[{'connected_gene': 'NRIP3', 'score': 6.1}, {'connected_gene': 'DENND5A', 'score': 4.26}, {'connected_gene': 'ZNF143', 'score': 2.74}, {'connected_gene': 'RPL27A', 'score': 1.53}, {'connected_gene': 'MIR5691', 'score': 0.31}, {'connected_gene': 'LOC105376541', 'score': 0.22}, {'connected_gene': 'SCUBE2', 'score': 0.18}]
chr11	GH11I009669	9669893	9670385	0.76	[{'connected_gene': 'NRIP3', 'score': 4.96}, {'connected_gene': 'SWAP70', 'score': 0.44}, {'connected_gene': 'RN7SKP50', 'score': 0.39}, {'connected_gene': 'GC11P009430', 'score': 0.07}]
chr11	GH11I009678	9678214	9679009	0.4	[{'connected_gene': 'NRIP3', 'score': 4.88}, {'connected_gene': 'RN7SKP50', 'score': 0.77}, {'connected_gene': 'SWAP70', 'score': 0.39}, {'connected_gene': 'GC11P009430', 'score': 0.07}]
chr11	GH11I009039	9039001	9039506	0.94	[{'connected_gene': 'TMEM9B-AS1', 'score': 10.37}, {'connected_gene': 'TMEM9B', 'score': 10.21}, {'connected_gene': 'NRIP3', 'score': 6.2}, {'connected_gene': 'ZNF143', 'score': 4.29}, {'connected_gene': 'DENND5A', 'score': 4.23}, {'connected_gene': 'RPL27A', 'score': 1.41}, {'connected_gene': 'LOC105376541', 'score': 0.28}, {'connected_gene': 'MIR5691', 'score': 0.23}, {'connected_gene': 'SCUBE2', 'score': 0.15}]
chr11	GH11I008989	8989514	8989663	0.49	[{'connected_gene': 'TMEM9B-AS1', 'score': 13.35}, {'connected_gene': 'TMEM9B', 'score': 13.35}, {'connected_gene': 'NRIP3', 'score': 0.39}, {'connected_gene': 'GC11P008977', 'score': 0.39}]
chr11	GH11I009288	9288999	9289342	0.36	[{'connected_gene': 'TMEM41B', 'score': 13.01}, {'connected_gene': 'KRT8P41', 'score': 7.83}, {'connected_gene': 'DENND5A', 'score': 4.89}, {'connected_gene': 'NRIP3', 'score': 2.95}, {'connected_gene': 'ZNF143', 'score': 2.11}, {'connected_gene': 'ENSG00000273725', 'score': 0.44}, {'connected_gene': 'PRR13P2', 'score': 0.34}]
chr11	GH11I009751	9751838	9767698	2.27	[{'connected_gene': 'SBF2-AS1', 'score': 560.37}, {'connected_gene': 'LOC440028', 'score': 550.77}, {'connected_gene': 'CTR9', 'score': 30.56}, {'connected_gene': 'SBF2', 'score': 28.25}, {'connected_gene': 'ENSG00000254397', 'score': 25.8}, {'connected_gene': 'RPL21P97', 'score': 21.96}, {'connected_gene': 'ST5', 'score': 20.5}, {'connected_gene': 'SWAP70', 'score': 17.4}, {'connected_gene': 'TMEM9B-AS1', 'score': 13.59}, {'connected_gene': 'ZNF143', 'score': 10.62}, {'connected_gene': 'ENSG00000238387', 'score': 10.31}, {'connected_gene': 'WEE1', 'score': 10.31}, {'connected_gene': 'NRIP3', 'score': 5.73}, {'connected_gene': 'LOC105376544', 'score': 4.39}, {'connected_gene': 'PIR37097', 'score': 0.77}, {'connected_gene': 'GC11M009781', 'score': 0.34}, {'connected_gene': 'PIR54730', 'score': 0.34}]
chr11	GH11I008967	8967299	8967534	0.42	[{'connected_gene': 'DENND5A', 'score': 4.26}, {'connected_gene': 'NRIP3', 'score': 3.64}, {'connected_gene': 'ZNF143', 'score': 2.49}, {'connected_gene': 'TMEM9B', 'score': 2.17}, {'connected_gene': 'TMEM9B-AS1', 'score': 0.77}, {'connected_gene': 'GC11P008977', 'score': 0.39}]
chr11	GH11I009361	9361045	9365986	1.66	[{'connected_gene': 'DENND5A', 'score': 31.56}, {'connected_gene': 'NRIP3', 'score': 28.47}, {'connected_gene': 'SNORA3B', 'score': 16.48}, {'connected_gene': 'ZNF143', 'score': 15.37}, {'connected_gene': 'AKIP1', 'score': 12.18}, {'connected_gene': 'RPL21P97', 'score': 11.44}, {'connected_gene': 'RPL27A', 'score': 11.27}, {'connected_gene': 'IPO7', 'score': 9.64}, {'connected_gene': 'TMEM41B', 'score': 6.17}, {'connected_gene': 'TMEM9B', 'score': 2.9}, {'connected_gene': 'SWAP70', 'score': 1.25}, {'connected_gene': 'GC11P009354', 'score': 0.44}]
chr11	GH11I009158	9158912	9161155	1.01	[{'connected_gene': 'DENND5A', 'score': 32.33}, {'connected_gene': 'NRIP3', 'score': 28.15}, {'connected_gene': 'SCUBE2', 'score': 16.69}, {'connected_gene': 'TMEM41B', 'score': 9.74}, {'connected_gene': 'ZNF143', 'score': 6.51}, {'connected_gene': 'IPO7', 'score': 2.32}, {'connected_gene': 'TMEM9B', 'score': 1.52}, {'connected_gene': 'RPL27A', 'score': 1.31}, {'connected_gene': 'GC11M009222', 'score': 0.21}]
chr11	GH11I009401	9401297	9401508	0.33	[{'connected_gene': 'DENND5A', 'score': 10.97}, {'connected_gene': 'IPO7', 'score': 1.97}, {'connected_gene': 'NRIP3', 'score': 1.3}, {'connected_gene': 'GC11P009428', 'score': 0.31}]
chr11	GH11I009003	9003494	9004582	1.83	[{'connected_gene': 'LOC105376541', 'score': 550.77}, {'connected_gene': 'NRIP3', 'score': 550.77}, {'connected_gene': 'SNORA3B', 'score': 14.49}, {'connected_gene': 'SCUBE2', 'score': 13.16}, {'connected_gene': 'TMEM9B', 'score': 13.06}, {'connected_gene': 'RPL27A', 'score': 11.12}, {'connected_gene': 'RPL21P97', 'score': 10.48}, {'connected_gene': 'AKIP1', 'score': 5.07}, {'connected_gene': 'GC11P008977', 'score': 0.31}]
chr11	GH11I009004	9004734	9004883	0.31	[{'connected_gene': 'LOC105376541', 'score': 550.77}, {'connected_gene': 'NRIP3', 'score': 550.77}, {'connected_gene': 'TMEM9B', 'score': 12.98}, {'connected_gene': 'MIR5691', 'score': 0.17}]
chr11	GH11I009273	9273201	9274600	1.1	[{'connected_gene': 'TRL-CAA5-1', 'score': 550.77}, {'connected_gene': 'DENND5A', 'score': 36.05}, {'connected_gene': 'NRIP3', 'score': 26.34}, {'connected_gene': 'TMEM41B', 'score': 10.56}, {'connected_gene': 'SCUBE2', 'score': 9.74}, {'connected_gene': 'ZNF143', 'score': 8.99}, {'connected_gene': 'IPO7', 'score': 2.48}, {'connected_gene': 'TMEM9B', 'score': 1.8}]
chr11	GH11I008979	8979402	8979799	0.46	[{'connected_gene': 'GC11P008977', 'score': 550.77}, {'connected_gene': 'AKIP1', 'score': 16.1}, {'connected_gene': 'TUB', 'score': 12.97}, {'connected_gene': 'SCUBE2', 'score': 9.47}, {'connected_gene': 'NRIP3', 'score': 9.38}]
chr11	GH11I009674	9674986	9676483	0.89	[{'connected_gene': 'ENSG00000254397', 'score': 18.15}, {'connected_gene': 'TMEM9B-AS1', 'score': 15.22}, {'connected_gene': 'ST5', 'score': 12.62}, {'connected_gene': 'ENSG00000238387', 'score': 10.17}, {'connected_gene': 'WEE1', 'score': 10.16}, {'connected_gene': 'SWAP70', 'score': 9.33}, {'connected_gene': 'NRIP3', 'score': 6.35}, {'connected_gene': 'RN7SKP50', 'score': 0.44}, {'connected_gene': 'GC11P009430', 'score': 0.07}]