PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309958	[[51515994, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522398], [51523075, 51523282]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]
ENST00000391805	[[51516000, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522398], [51523323, 51523431]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]
ENST00000358789	[[51517525, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522395], [51522882, 51523020]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]
ENST00000601467	[[51517765, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51521710, 51522105]]	[[51519257, 51519389]]
ENST00000599987	[[51519068, 51519412], [51520365, 51520578]]	None
ENST00000599077	[[51519252, 51519412], [51520365, 51520546], [51522298, 51522398], [51523323, 51523431]]	[[51519252, 51519412], [51520365, 51520546], [51522298, 51522386]]
NM_145888	[[51515999, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522395], [51522882, 51522954]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]
NM_002776	[[51515999, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522398], [51523075, 51523282]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]
NM_001077500	[[51515999, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522398], [51523323, 51523431]]	[[51518055, 51518208], [51518672, 51518806], [51519137, 51519412], [51520365, 51520546], [51522298, 51522386]]

Promoter

Chrom	Start	End	Description
chr19	51522099	51522111	CAGE_peak_5_at_KLK10_5end
chr19	51522377	51522384	CAGE_peak_14_at_KLK10_5end
chr19	51522391	51522402	CAGE_peak_7_at_KLK10_5end
chr19	51522621	51522632	CAGE_peak_8_at_KLK10_5end
chr19	51522955	51522972	CAGE_peak_1_at_KLK10_5end
chr19	51523275	51523312	CAGE_peak_3_at_KLK10_5end
chr19	51523347	51523358	CAGE_peak_11_at_KLK10_5end
chr19	51523412	51523427	CAGE_peak_2_at_KLK10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I051016	51016639	51018114	1.11	[{'connected_gene': 'ZNF175', 'score': 29.06}, {'connected_gene': 'ZNF615', 'score': 25.61}, {'connected_gene': 'KLK10', 'score': 23.63}, {'connected_gene': 'ZNF577', 'score': 19.9}, {'connected_gene': 'LRRC4B', 'score': 15.86}, {'connected_gene': 'POLD1', 'score': 13.51}, {'connected_gene': 'SPACA6', 'score': 13.46}, {'connected_gene': 'ZNF613', 'score': 12.25}, {'connected_gene': 'ZNF350', 'score': 11.4}, {'connected_gene': 'KLK13', 'score': 11.2}, {'connected_gene': 'KLK6', 'score': 11.08}, {'connected_gene': 'ZNF473', 'score': 10.98}, {'connected_gene': 'ENSG00000267808', 'score': 10.77}, {'connected_gene': 'SHANK1', 'score': 10.69}, {'connected_gene': 'ZNF649', 'score': 10.65}, {'connected_gene': 'KLK14', 'score': 10.37}, {'connected_gene': 'VRK3', 'score': 10.36}, {'connected_gene': 'ENSG00000268231', 'score': 10.26}, {'connected_gene': 'LINC01869', 'score': 9.46}, {'connected_gene': 'C19orf48', 'score': 9.46}, {'connected_gene': 'SNORD88C', 'score': 9.46}, {'connected_gene': 'ENSG00000268739', 'score': 0.77}]
chr19	GH19I051018	51018220	51020644	1.55	[{'connected_gene': 'KLK10', 'score': 574.42}, {'connected_gene': 'ZNF577', 'score': 28.71}, {'connected_gene': 'ZNF649', 'score': 25.8}, {'connected_gene': 'ZNF175', 'score': 22.55}, {'connected_gene': 'ENSG00000269483', 'score': 15.54}, {'connected_gene': 'KLK13', 'score': 11.2}, {'connected_gene': 'KLK6', 'score': 11.08}, {'connected_gene': 'ZNF350', 'score': 10.97}, {'connected_gene': 'ZNF615', 'score': 10.56}, {'connected_gene': 'KLK14', 'score': 10.37}, {'connected_gene': 'ZNF473', 'score': 10.06}, {'connected_gene': 'SNORD88C', 'score': 9.46}, {'connected_gene': 'LINC01869', 'score': 9.46}, {'connected_gene': 'C19orf48', 'score': 9.46}, {'connected_gene': 'ENSG00000267879', 'score': 5.38}, {'connected_gene': 'ENSG00000268739', 'score': 0.44}]
chr19	GH19I051021	51021105	51021334	0.69	[{'connected_gene': 'KLK10', 'score': 550.77}, {'connected_gene': 'KLK11', 'score': 0.44}]
chr19	GH19I051070	51070637	51071618	0.72	[{'connected_gene': 'POLD1', 'score': 11.53}, {'connected_gene': 'CTU1', 'score': 11.4}, {'connected_gene': 'KLK10', 'score': 11.33}, {'connected_gene': 'KLK11', 'score': 10.9}, {'connected_gene': 'KLK2', 'score': 9.6}, {'connected_gene': 'KLK13', 'score': 0.44}, {'connected_gene': 'KLK14', 'score': 0.37}]
chr19	GH19I051136	51136001	51145400	1.96	[{'connected_gene': 'SIGLEC7', 'score': 558.62}, {'connected_gene': 'SIGLEC17P', 'score': 11.99}, {'connected_gene': 'CTU1', 'score': 11.6}, {'connected_gene': 'POLD1', 'score': 11.58}, {'connected_gene': 'SIGLEC9', 'score': 11.51}, {'connected_gene': 'ZNF616', 'score': 11.13}, {'connected_gene': 'KLK14', 'score': 10.62}, {'connected_gene': 'KLK10', 'score': 10.12}, {'connected_gene': 'SIGLEC10', 'score': 3.02}, {'connected_gene': 'CD33', 'score': 2.23}, {'connected_gene': 'SIGLEC12', 'score': 1.11}, {'connected_gene': 'ENSG00000267990', 'score': 0.77}, {'connected_gene': 'ENSG00000267895', 'score': 0.77}]
chr19	GH19I050951	50951624	50953430	0.96	[{'connected_gene': 'KLK5', 'score': 556.88}, {'connected_gene': 'ENSG00000269495', 'score': 9.76}, {'connected_gene': 'KLK10', 'score': 4.78}]
chr19	GH19I050999	50999723	51003350	1.52	[{'connected_gene': 'KLK8', 'score': 560.66}, {'connected_gene': 'KLK10', 'score': 6.69}, {'connected_gene': 'ENSG00000269741', 'score': 0.44}, {'connected_gene': 'KLK9', 'score': 0.44}, {'connected_gene': 'KLK7', 'score': 0.37}, {'connected_gene': 'ENSG00000267879', 'score': 0.29}]
chr19	GH19I051027	51027981	51028040	0.5	[{'connected_gene': 'KLK11', 'score': 550.77}, {'connected_gene': 'KLK10', 'score': 0.44}]
chr19	GH19I051025	51025425	51027973	0.99	[{'connected_gene': 'KLK11', 'score': 550.77}, {'connected_gene': 'POLD1', 'score': 14.68}, {'connected_gene': 'ENSG00000268316', 'score': 12.65}, {'connected_gene': 'SIGLEC17P', 'score': 10.98}, {'connected_gene': 'ZNF577', 'score': 10.66}, {'connected_gene': 'ZNF350', 'score': 10.25}, {'connected_gene': 'ZNF613', 'score': 10.12}, {'connected_gene': 'KLK12', 'score': 6.11}, {'connected_gene': 'KLK10', 'score': 0.44}]