PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000246024	[[7957994, 7963268], [7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [8000084, 8000476]]	[[7962897, 7963268], [7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [8000084, 8000260]]
ENST00000527925	[[7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980469], [7990846, 7990962], [8000084, 8000452]]	[[7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980469], [7990846, 7990962], [8000084, 8000260]]
ENST00000462384	[[7967956, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [7999439, 7999686], [8000084, 8000293]]	[[7999622, 7999686], [8000084, 8000260]]
ENST00000530935	[[7967970, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [7994414, 7994577]]	None
NM_021156	[[7957999, 7963268], [7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [8000084, 8000476]]	[[7962897, 7963268], [7964440, 7964504], [7967934, 7968036], [7976672, 7976718], [7980378, 7980507], [7982142, 7982188], [7990846, 7990962], [8000084, 8000260]]

Promoter

Chrom	Start	End	Description
chr20	8000268	8000303	CAGE_peak_3_at_TMX4_5end
chr20	8000311	8000323	CAGE_peak_6_at_TMX4_5end
chr20	8000330	8000338	CAGE_peak_8_at_TMX4_5end
chr20	8000340	8000359	CAGE_peak_5_at_TMX4_5end
chr20	8000361	8000375	CAGE_peak_4_at_TMX4_5end
chr20	8000391	8000420	CAGE_peak_1_at_TMX4_5end
chr20	8000426	8000471	CAGE_peak_2_at_TMX4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I007924	7924354	7925724	0.86	[{'connected_gene': 'TMX4', 'score': 5.58}, {'connected_gene': 'HAO1', 'score': 1.48}, {'connected_gene': 'ENSG00000277315', 'score': 0.22}]
chr20	GH20I008137	8137336	8138951	0.31	[{'connected_gene': 'TMX4', 'score': 4.93}, {'connected_gene': 'PHKBP1', 'score': 0.28}, {'connected_gene': 'GC20M008185', 'score': 0.23}, {'connected_gene': 'PLCB1', 'score': 0.21}]
chr20	GH20I008475	8475919	8476332	0.48	[{'connected_gene': 'TMX4', 'score': 3.6}, {'connected_gene': 'PLCB1', 'score': 2.12}, {'connected_gene': 'GC20P008366', 'score': 0.14}, {'connected_gene': 'GC20M008621', 'score': 0.11}]
chr20	GH20I008050	8050201	8050400	0.2	[{'connected_gene': 'TMX4', 'score': 7.97}, {'connected_gene': 'PIR52554', 'score': 0.34}, {'connected_gene': 'PLCB1', 'score': 0.31}]
chr20	GH20I008072	8072187	8074283	0.87	[{'connected_gene': 'TMX4', 'score': 5.8}, {'connected_gene': 'PLCB1', 'score': 0.77}, {'connected_gene': 'PIR52554', 'score': 0.26}]
chr20	GH20I008082	8082389	8083843	0.43	[{'connected_gene': 'TMX4', 'score': 6.0}, {'connected_gene': 'PLCB1', 'score': 0.44}, {'connected_gene': 'GC20M008097', 'score': 0.37}]
chr20	GH20I008094	8094304	8095870	1	[{'connected_gene': 'TMX4', 'score': 5.73}, {'connected_gene': 'GC20M008097', 'score': 0.77}, {'connected_gene': 'PLCB1', 'score': 0.37}]
chr20	GH20I008130	8129714	8129723	0.7	[{'connected_gene': 'TMX4', 'score': 10.45}, {'connected_gene': 'LOC105372520', 'score': 10.45}, {'connected_gene': 'PHKBP1', 'score': 0.31}, {'connected_gene': 'PLCB1', 'score': 0.23}, {'connected_gene': 'GC20M008185', 'score': 0.21}]
chr20	GH20I008129	8129754	8129863	0.76	[{'connected_gene': 'TMX4', 'score': 10.45}, {'connected_gene': 'LOC105372520', 'score': 10.45}, {'connected_gene': 'PHKBP1', 'score': 0.31}, {'connected_gene': 'PLCB1', 'score': 0.23}, {'connected_gene': 'GC20M008185', 'score': 0.22}]
chr20	GH20I008018	8018400	8021278	2.03	[{'connected_gene': 'TMX4', 'score': 564.62}, {'connected_gene': 'LOC105372520', 'score': 550.77}, {'connected_gene': 'GC20P008028', 'score': 0.44}]
chr20	GH20I008427	8427401	8428407	0.79	[{'connected_gene': 'PLCB1', 'score': 10.6}, {'connected_gene': 'TMX4', 'score': 8.46}, {'connected_gene': 'GC20P008366', 'score': 0.21}, {'connected_gene': 'GC20M008621', 'score': 0.08}]
chr20	GH20I008431	8431880	8433583	0.95	[{'connected_gene': 'PLCB1', 'score': 4.98}, {'connected_gene': 'TMX4', 'score': 1.41}, {'connected_gene': 'GC20P008366', 'score': 0.2}, {'connected_gene': 'GC20M008621', 'score': 0.08}]
chr20	GH20I008039	8039094	8039243	0.63	[{'connected_gene': 'LOC105372520', 'score': 11.43}, {'connected_gene': 'TMX4', 'score': 5.41}, {'connected_gene': 'PIR52554', 'score': 0.44}, {'connected_gene': 'PLCB1', 'score': 0.28}]
chr20	GH20I008722	8722414	8722583	0.75	[{'connected_gene': 'LOC105372520', 'score': 11.08}, {'connected_gene': 'TMX4', 'score': 11.08}, {'connected_gene': 'LOC105372521', 'score': 0.2}, {'connected_gene': 'GC20P008831', 'score': 0.14}, {'connected_gene': 'RNU105B', 'score': 0.14}, {'connected_gene': 'PLCB1', 'score': 0.03}]