PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000389120	[[104296132, 104296196], [104297679, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303257], [104307048, 104307167], [104309101, 104309248], [104309418, 104309496], [104309680, 104309800], [104312887, 104313067], [104313965, 104314101], [104314422, 104314544], [104314664, 104315035], [104316269, 104316387], [104316975, 104317125], [104319665, 104319878], [104323082, 104323208], [104323371, 104323512], [104324191, 104324293], [104324527, 104325622]]	[[104297705, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303257], [104307048, 104307167], [104309101, 104309248], [104309418, 104309496], [104309680, 104309800], [104312887, 104313067], [104313965, 104314101], [104314422, 104314544], [104314664, 104315035], [104316269, 104316387], [104316975, 104317125], [104319665, 104319878], [104323082, 104323208], [104323371, 104323512], [104324191, 104324293], [104324527, 104324704]]
ENST00000374819	[[104296169, 104296196], [104297679, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303172]]	[[104297705, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303172]]
ENST00000479306	[[104296186, 104296250], [104297679, 104297834], [104302484, 104302652]]	[[104297705, 104297834], [104302484, 104302652]]
ENST00000481046	[[104296239, 104296582], [104297679, 104297834], [104302458, 104302561]]	None
ENST00000466817	[[104296260, 104296582], [104297679, 104297834], [104302484, 104302652], [104302771, 104302910]]	[[104297705, 104297834], [104302484, 104302652], [104302771, 104302910]]
ENST00000478072	[[104322962, 104323208], [104323371, 104323734]]	None
NM_019592	[[104296130, 104296196], [104297679, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303257], [104307048, 104307167], [104309101, 104309248], [104309418, 104309496], [104309680, 104309800], [104312887, 104313067], [104313965, 104314101], [104314422, 104314544], [104314664, 104315035], [104316269, 104316387], [104316975, 104317125], [104319665, 104319878], [104323082, 104323208], [104323371, 104323512], [104324191, 104324293], [104324527, 104325626]]	[[104297705, 104297834], [104302484, 104302652], [104302771, 104302919], [104303074, 104303257], [104307048, 104307167], [104309101, 104309248], [104309418, 104309496], [104309680, 104309800], [104312887, 104313067], [104313965, 104314101], [104314422, 104314544], [104314664, 104315035], [104316269, 104316387], [104316975, 104317125], [104319665, 104319878], [104323082, 104323208], [104323371, 104323512], [104324191, 104324293], [104324527, 104324704]]

Promoter

Chrom	Start	End	Description
chr9	104296122	104296161	CAGE_peak_1_at_RNF20_5end
chr9	104296163	104296183	CAGE_peak_2_at_RNF20_5end
chr9	104296214	104296223	CAGE_peak_13_at_RNF20_5end
chr9	104296243	104296258	CAGE_peak_15_at_RNF20_5end
chr9	104314431	104314446	CAGE_peak_4_at_RNF20_5end
chr9	104314486	104314499	CAGE_peak_5_at_RNF20_5end
chr9	104314750	104314770	CAGE_peak_3_at_RNF20_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I101452	101452753	101454568	0.51	[{'connected_gene': 'TMEM246', 'score': 11.08}, {'connected_gene': 'RNF20', 'score': 11.07}, {'connected_gene': 'ZNF189', 'score': 10.81}, {'connected_gene': 'MRPL50', 'score': 10.8}, {'connected_gene': 'ALDOB', 'score': 8.51}, {'connected_gene': 'LOC105376184', 'score': 0.39}, {'connected_gene': 'TMEM246-AS1', 'score': 0.39}]
chr9	GH09I101569	101569397	101570711	0.52	[{'connected_gene': 'TMEM246', 'score': 10.92}, {'connected_gene': 'RNF20', 'score': 10.92}, {'connected_gene': 'PPP3R2', 'score': 10.92}, {'connected_gene': 'PIR43226', 'score': 0.34}, {'connected_gene': 'GRIN3A', 'score': 0.1}]
chr9	GH09I101465	101465201	101466088	0.92	[{'connected_gene': 'TMEM246', 'score': 24.08}, {'connected_gene': 'RNF20', 'score': 11.24}, {'connected_gene': 'TMEM246-AS1', 'score': 0.77}, {'connected_gene': 'LOC105376184', 'score': 0.34}]
chr9	GH09I101459	101459000	101459268	0.92	[{'connected_gene': 'TMEM246', 'score': 12.11}, {'connected_gene': 'RNF20', 'score': 12.11}, {'connected_gene': 'TMEM246-AS1', 'score': 0.44}, {'connected_gene': 'LOC105376184', 'score': 0.37}]
chr9	GH09I101532	101532803	101534837	2	[{'connected_gene': 'TMEM246', 'score': 550.77}, {'connected_gene': 'RNF20', 'score': 550.77}, {'connected_gene': 'TMEM246-AS1', 'score': 6.93}]
chr9	GH09I101482	101482365	101482538	0.2	[{'connected_gene': 'TMEM246', 'score': 10.85}, {'connected_gene': 'RNF20', 'score': 10.85}, {'connected_gene': 'GC09M101474', 'score': 0.44}, {'connected_gene': 'ENSG00000233055', 'score': 0.37}]
chr9	GH09I101485	101485582	101488536	2.19	[{'connected_gene': 'TMEM246', 'score': 559.49}, {'connected_gene': 'TMEM246-AS1', 'score': 7.0}, {'connected_gene': 'RNF20', 'score': 6.09}, {'connected_gene': 'ENSG00000233055', 'score': 0.39}, {'connected_gene': 'GC09M101474', 'score': 0.39}]
chr9	GH09I101478	101478296	101482047	0.56	[{'connected_gene': 'TMEM246', 'score': 42.88}, {'connected_gene': 'TMEM246-AS1', 'score': 16.02}, {'connected_gene': 'RNF20', 'score': 11.57}, {'connected_gene': 'GC09M101474', 'score': 0.44}, {'connected_gene': 'ENSG00000233055', 'score': 0.34}]
chr9	GH09I101430	101430945	101451831	2.43	[{'connected_gene': 'ALDOB', 'score': 558.57}, {'connected_gene': 'LOC105376184', 'score': 550.77}, {'connected_gene': 'ZNF189', 'score': 16.37}, {'connected_gene': 'TMEM246', 'score': 11.36}, {'connected_gene': 'RNF20', 'score': 11.36}, {'connected_gene': 'MRPL50', 'score': 11.18}, {'connected_gene': 'TMEM246-AS1', 'score': 10.91}, {'connected_gene': 'BAAT', 'score': 5.56}]
chr9	GH09I101222	101222731	101222849	0.22	[{'connected_gene': 'LOC105376183', 'score': 550.77}, {'connected_gene': 'PPP3R2', 'score': 7.34}, {'connected_gene': 'PLPPR1', 'score': 2.17}, {'connected_gene': 'RNF20', 'score': 1.22}, {'connected_gene': 'LOC105376182', 'score': 0.37}]
chr9	GH09I101585	101585401	101586400	0.2	[{'connected_gene': 'PIR43226', 'score': 0.44}, {'connected_gene': 'RNF20', 'score': 0.23}, {'connected_gene': 'GRIN3A', 'score': 0.1}]
chr9	GH09I101582	101582699	101582848	0.38	[{'connected_gene': 'PIR43226', 'score': 0.39}, {'connected_gene': 'RNF20', 'score': 0.25}, {'connected_gene': 'GRIN3A', 'score': 0.1}]