PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000590474	[[67410838, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67539472]]	[[67411125, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67537894]]
ENST00000586641	[[67410851, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517974]]	None
ENST00000359094	[[67410974, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513692], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67538651]]	[[67411125, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513692], [67515453, 67515476]]
ENST00000589295	[[67498294, 67498558], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516465]]	[[67513676, 67513754], [67515453, 67515573], [67516410, 67516465]]
ENST00000588110	[[67498406, 67498558], [67500599, 67500720], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516419]]	[[67500695, 67500720], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516419]]
ENST00000589647	[[67498569, 67498826], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67538160]]	[[67513676, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67537894]]
ENST00000591445	[[67501588, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67517967]]	None
ENST00000592348	[[67532206, 67532301], [67537816, 67538152]]	None
NM_002758	[[67410837, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67538470]]	[[67411125, 67411141], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67537894]]
NM_001330450	[[67498362, 67498826], [67501920, 67501987], [67512995, 67513044], [67513640, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67550002]]	[[67513676, 67513754], [67515453, 67515573], [67516410, 67516527], [67517189, 67517241], [67519654, 67519782], [67521041, 67521119], [67522710, 67522850], [67532255, 67532301], [67537816, 67537894]]

Promoter

Chrom	Start	End	Description
chr17	67410832	67410871	CAGE_peak_1_at_MAP2K6_5end
chr17	67410874	67410889	CAGE_peak_4_at_MAP2K6_5end
chr17	67498312	67498333	CAGE_peak_5_at_MAP2K6_5end
chr17	67498396	67498409	CAGE_peak_3_at_MAP2K6_5end
chr17	67498411	67498447	CAGE_peak_2_at_MAP2K6_5end
chr17	67498499	67498513	CAGE_peak_7_at_MAP2K6_5end
chr17	67498538	67498552	CAGE_peak_8_at_MAP2K6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I069424	69424254	69424779	0.31	[{'connected_gene': 'MAP2K6', 'score': 0.44}, {'connected_gene': 'ENSG00000278972', 'score': 0.44}]
chr17	GH17I069414	69414100	69418773	2.32	[{'connected_gene': 'MAP2K6', 'score': 550.77}, {'connected_gene': 'ENSG00000278972', 'score': 0.37}]
chr17	GH17I069429	69429708	69431191	0.92	[{'connected_gene': 'ABCA5', 'score': 14.55}, {'connected_gene': 'ENSG00000278972', 'score': 0.77}, {'connected_gene': 'MAP2K6', 'score': 0.37}]
chr17	GH17I069427	69427601	69427800	0.2	[{'connected_gene': 'ABCA5', 'score': 10.18}, {'connected_gene': 'ENSG00000278972', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.39}]
chr17	GH17I069450	69450205	69452052	0.58	[{'connected_gene': 'ABCA5', 'score': 6.27}, {'connected_gene': 'GC17M069459', 'score': 0.39}, {'connected_gene': 'ENSG00000278972', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.28}]
chr17	GH17I069447	69447557	69449497	0.89	[{'connected_gene': 'ABCA5', 'score': 5.7}, {'connected_gene': 'GC17M069459', 'score': 0.39}, {'connected_gene': 'ENSG00000278972', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.29}]
chr17	GH17I069428	69428001	69429400	0.58	[{'connected_gene': 'ABCA5', 'score': 10.18}, {'connected_gene': 'ENSG00000278972', 'score': 0.77}, {'connected_gene': 'MAP2K6', 'score': 0.39}]
chr17	GH17I069489	69489733	69490605	0.31	[{'connected_gene': 'LOC105371880', 'score': 0.39}, {'connected_gene': 'GC17M069471', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.18}]
chr17	GH17I069497	69497828	69498906	0.2	[{'connected_gene': 'LOC105371880', 'score': 0.77}, {'connected_gene': 'GC17M069471', 'score': 0.34}, {'connected_gene': 'MAP2K6', 'score': 0.18}]
chr17	GH17I069505	69505108	69506769	0.69	[{'connected_gene': 'LOC105371880', 'score': 0.77}, {'connected_gene': 'GC17M069521', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.16}]
chr17	GH17I069492	69492353	69493209	1	[{'connected_gene': 'LOC105371880', 'score': 0.44}, {'connected_gene': 'GC17M069471', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.18}]
chr17	GH17I069479	69479561	69481033	0.2	[{'connected_gene': 'LOC105371880', 'score': 5.96}, {'connected_gene': 'MAP2K6', 'score': 4.73}, {'connected_gene': 'GC17M069471', 'score': 0.44}]
chr17	GH17I069500	69500644	69503098	1.5	[{'connected_gene': 'LOC105371880', 'score': 550.77}, {'connected_gene': 'MAP2K6', 'score': 11.65}, {'connected_gene': 'GC17M069521', 'score': 0.34}]
chr17	GH17I069504	69504481	69504980	0.2	[{'connected_gene': 'LOC105371880', 'score': 0.77}, {'connected_gene': 'GC17M069521', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.16}]
chr17	GH17I069503	69503820	69503969	0.91	[{'connected_gene': 'LOC105371880', 'score': 0.77}, {'connected_gene': 'GC17M069521', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.17}]
chr17	GH17I069534	69534779	69535569	0.2	[{'connected_gene': 'SNRPGP4', 'score': 4.87}, {'connected_gene': 'GC17M069521', 'score': 0.39}, {'connected_gene': 'ENSG00000267194', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.13}]
chr17	GH17I069453	69453723	69454505	0.43	[{'connected_gene': 'GC17M069459', 'score': 0.44}, {'connected_gene': 'ENSG00000278972', 'score': 0.34}, {'connected_gene': 'MAP2K6', 'score': 0.28}]
chr17	GH17I069438	69438490	69439050	0.31	[{'connected_gene': 'ENSG00000278972', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.34}, {'connected_gene': 'GC17M069459', 'score': 0.34}]
chr17	GH17I069460	69460305	69462189	0.63	[{'connected_gene': 'GC17M069459', 'score': 550.77}, {'connected_gene': 'ENSG00000278972', 'score': 0.31}, {'connected_gene': 'MAP2K6', 'score': 0.25}]
chr17	GH17I069470	69470370	69471469	0.31	[{'connected_gene': 'GC17M069471', 'score': 0.77}, {'connected_gene': 'GC17M069459', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.22}]
chr17	GH17I069434	69434198	69434624	1.02	[{'connected_gene': 'ENSG00000278972', 'score': 550.77}, {'connected_gene': 'MAP2K6', 'score': 0.37}, {'connected_gene': 'GC17M069459', 'score': 0.31}]
chr17	GH17I069465	69465927	69468688	0.87	[{'connected_gene': 'GC17M069471', 'score': 0.44}, {'connected_gene': 'GC17M069459', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.23}]
chr17	GH17I069473	69473622	69475346	0.89	[{'connected_gene': 'GC17M069471', 'score': 550.77}, {'connected_gene': 'ENSG00000267194', 'score': 5.65}, {'connected_gene': 'GC17M069459', 'score': 0.39}, {'connected_gene': 'MAP2K6', 'score': 0.22}]
chr17	GH17I069533	69533469	69534151	0.43	[{'connected_gene': 'GC17M069521', 'score': 0.39}, {'connected_gene': 'ENSG00000267194', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.13}]
chr17	GH17I069425	69425798	69426241	0.2	[{'connected_gene': 'ENSG00000278972', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.39}]
chr17	GH17I069401	69401680	69402240	0.49	[{'connected_gene': 'GC17M069385', 'score': 0.44}, {'connected_gene': 'MAP2K6', 'score': 0.39}]
chr17	GH17I069538	69538945	69541006	0.82	[{'connected_gene': 'ENSG00000267194', 'score': 0.39}, {'connected_gene': 'GC17M069521', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.13}]
chr17	GH17I069526	69526100	69526249	0.6	[{'connected_gene': 'GC17M069521', 'score': 0.77}, {'connected_gene': 'ENSG00000267194', 'score': 0.31}, {'connected_gene': 'MAP2K6', 'score': 0.14}]
chr17	GH17I069452	69452846	69453692	0.31	[{'connected_gene': 'GC17M069459', 'score': 0.44}, {'connected_gene': 'ENSG00000278972', 'score': 0.34}, {'connected_gene': 'MAP2K6', 'score': 0.28}]
chr17	GH17I069522	69522880	69523621	0.66	[{'connected_gene': 'GC17M069521', 'score': 550.77}, {'connected_gene': 'ENSG00000267194', 'score': 0.31}, {'connected_gene': 'MAP2K6', 'score': 0.14}]
chr17	GH17I069481	69481074	69481795	0.2	[{'connected_gene': 'GC17M069471', 'score': 0.44}, {'connected_gene': 'LOC105371880', 'score': 0.34}, {'connected_gene': 'MAP2K6', 'score': 0.2}]
chr17	GH17I069485	69485255	69485846	0.58	[{'connected_gene': 'GC17M069471', 'score': 0.39}, {'connected_gene': 'LOC105371880', 'score': 0.37}, {'connected_gene': 'MAP2K6', 'score': 0.19}]
chr17	GH17I069477	69477061	69479071	0.89	[{'connected_gene': 'GC17M069471', 'score': 0.77}, {'connected_gene': 'LOC105371880', 'score': 0.34}, {'connected_gene': 'MAP2K6', 'score': 0.21}]