PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000502773	[[157681605, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892546]]	[[157684241, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892055]]
ENST00000274071	[[157682765, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157782580, 157782641], [157891937, 157892467]]	[[157782606, 157782641], [157891937, 157892055]]
ENST00000541126	[[157683902, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157891937, 157892228]]	[[157684241, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157731994]]
ENST00000422544	[[157684241, 157684358], [157689113, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892055]]	[[157684241, 157684358], [157689113, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892055]]
ENST00000504672	[[157683954, 157684358], [157688924, 157689028], [157689113, 157689142], [157693837, 157694045], [157694828, 157694869]]	None
ENST00000506880	[[157684099, 157684358], [157688924, 157689142], [157693837, 157694045], [157699352, 157699461], [157700239, 157700310], [157731988, 157732020], [157732104, 157732169], [157771372, 157771424]]	[[157700298, 157700310], [157731988, 157732020], [157732104, 157732169], [157771372, 157771424]]
ENST00000542208	[[157684099, 157684358], [157688924, 157689142], [157693837, 157694045], [157699352, 157699461], [157700239, 157700310], [157731988, 157732020], [157732104, 157732169], [157771372, 157771424]]	[[157684241, 157684358], [157688924, 157689142], [157693837, 157694045], [157699352, 157699382]]
ENST00000510982	[[157688933, 157689142], [157693837, 157694045], [157695523, 157695630]]	None
ENST00000511985	[[157691333, 157691795], [157693837, 157694045], [157731988, 157732043]]	None
ENST00000512711	[[157693940, 157694045], [157757066, 157757159], [157771372, 157771568], [157782580, 157782641], [157795057, 157795124]]	None
ENST00000513664	[[157888480, 157888897], [157891937, 157892117]]	None
NR_036641	[[157682762, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157782580, 157782641], [157891937, 157892546]]	None
NM_016205	[[157682762, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892546]]	[[157684241, 157684358], [157688924, 157689142], [157693837, 157694045], [157731988, 157732169], [157771372, 157771568], [157891937, 157892055]]

Promoter

Chrom	Start	End	Description
chr4	157695641	157695666	CAGE_peak_14_at_PDGFC_5end
chr4	157695752	157695777	CAGE_peak_13_at_PDGFC_5end
chr4	157892102	157892128	CAGE_peak_5_at_PDGFC_5end
chr4	157892139	157892162	CAGE_peak_6_at_PDGFC_5end
chr4	157892167	157892217	CAGE_peak_9_at_PDGFC_5end
chr4	157892250	157892283	CAGE_peak_4_at_PDGFC_5end
chr4	157892356	157892368	CAGE_peak_10_at_PDGFC_5end
chr4	157892471	157892493	CAGE_peak_8_at_PDGFC_5end
chr4	157892498	157892532	CAGE_peak_2_at_PDGFC_5end
chr4	157892733	157892740	CAGE_peak_17_at_PDGFC_5end
chr4	157892921	157892990	CAGE_peak_1_at_PDGFC_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I156769	156769480	156776779	1.34	[{'connected_gene': 'PDGFC', 'score': 15.86}, {'connected_gene': 'ENSG00000250622', 'score': 11.45}, {'connected_gene': 'ENSG00000248629', 'score': 11.29}, {'connected_gene': 'LINC02272', 'score': 9.75}, {'connected_gene': 'ENSG00000249479', 'score': 9.75}, {'connected_gene': 'ENSG00000248912', 'score': 0.17}]
chr4	GH04I156766	156766308	156769304	0.2	[{'connected_gene': 'PDGFC', 'score': 4.49}, {'connected_gene': 'ENSG00000248629', 'score': 0.19}, {'connected_gene': 'ENSG00000248912', 'score': 0.18}]
chr4	GH04I156968	156968023	156973466	2.36	[{'connected_gene': 'PDGFC', 'score': 553.3}, {'connected_gene': 'ENSG00000250622', 'score': 550.77}, {'connected_gene': 'ENSG00000278880', 'score': 0.18}]
chr4	GH04I156940	156940514	156952769	1.66	[{'connected_gene': 'PDGFC', 'score': 15.37}, {'connected_gene': 'ENSG00000250622', 'score': 11.57}, {'connected_gene': 'ENSG00000248629', 'score': 10.38}, {'connected_gene': 'ENSG00000278880', 'score': 0.22}]
chr4	GH04I156777	156777355	156783621	1.12	[{'connected_gene': 'PDGFC', 'score': 16.08}, {'connected_gene': 'ENSG00000250622', 'score': 11.45}, {'connected_gene': 'ENSG00000248629', 'score': 10.95}, {'connected_gene': 'ENSG00000248912', 'score': 0.16}]
chr4	GH04I156929	156929536	156932359	1.32	[{'connected_gene': 'PDGFC', 'score': 0.26}, {'connected_gene': 'ENSG00000278880', 'score': 0.26}]
chr4	GH04I156953	156953633	156954995	0.43	[{'connected_gene': 'PDGFC', 'score': 0.37}, {'connected_gene': 'ENSG00000278880', 'score': 0.2}]
chr4	GH04I156959	156959284	156960000	1	[{'connected_gene': 'PDGFC', 'score': 0.39}, {'connected_gene': 'ENSG00000278880', 'score': 0.19}]
chr4	GH04I157265	157265515	157265765	0.36	[{'connected_gene': 'GRIA2', 'score': 10.5}, {'connected_gene': 'RNU6-582P', 'score': 10.5}, {'connected_gene': 'LOC391707', 'score': 10.5}, {'connected_gene': 'GLRB', 'score': 3.22}, {'connected_gene': 'PDGFC', 'score': 1.43}, {'connected_gene': 'LINC02433', 'score': 0.06}]
chr4	GH04I156824	156824551	156826051	0.4	[{'connected_gene': 'LINC02272', 'score': 10.11}, {'connected_gene': 'ENSG00000249479', 'score': 10.11}, {'connected_gene': 'PDGFC', 'score': 4.08}, {'connected_gene': 'ENSG00000248629', 'score': 0.37}, {'connected_gene': 'ENSG00000248912', 'score': 0.12}]
chr4	GH04I156829	156829001	156831158	0.71	[{'connected_gene': 'LINC02272', 'score': 9.9}, {'connected_gene': 'ENSG00000249479', 'score': 9.9}, {'connected_gene': 'ENSG00000248629', 'score': 0.39}, {'connected_gene': 'ENSG00000248912', 'score': 0.11}, {'connected_gene': 'PDGFC', 'score': 0.11}]
chr4	GH04I157125	157125869	157127026	0.2	[{'connected_gene': 'ENSG00000250622', 'score': 11.06}, {'connected_gene': 'PDGFC', 'score': 11.05}, {'connected_gene': 'GLRB', 'score': 5.17}, {'connected_gene': 'RNU6-582P', 'score': 0.18}]
chr4	GH04I156998	156998577	157000475	1.12	[{'connected_gene': 'ENSG00000250622', 'score': 11.91}, {'connected_gene': 'PDGFC', 'score': 11.91}, {'connected_gene': 'GLRB', 'score': 4.52}, {'connected_gene': 'RPPH1-3P', 'score': 0.39}, {'connected_gene': 'GC04P157065', 'score': 0.2}]
chr4	GH04I157003	157003215	157005562	1.05	[{'connected_gene': 'ENSG00000250622', 'score': 11.89}, {'connected_gene': 'PDGFC', 'score': 11.89}, {'connected_gene': 'GLRB', 'score': 4.53}, {'connected_gene': 'RPPH1-3P', 'score': 0.37}, {'connected_gene': 'GC04P157065', 'score': 0.21}]
chr4	GH04I156992	156992479	156993728	0.31	[{'connected_gene': 'ENSG00000250622', 'score': 11.43}, {'connected_gene': 'PDGFC', 'score': 11.43}, {'connected_gene': 'RNU6-582P', 'score': 9.26}, {'connected_gene': 'GRIA2', 'score': 9.26}, {'connected_gene': 'LOC391707', 'score': 9.26}, {'connected_gene': 'RPPH1-3P', 'score': 0.44}, {'connected_gene': 'GC04P157065', 'score': 0.19}]
chr4	GH04I157012	157012375	157013755	0.58	[{'connected_gene': 'ENSG00000250622', 'score': 11.37}, {'connected_gene': 'PDGFC', 'score': 11.37}, {'connected_gene': 'RPPH1-3P', 'score': 0.31}, {'connected_gene': 'GC04P157065', 'score': 0.23}]
chr4	GH04I157048	157048369	157048518	0.2	[{'connected_gene': 'ENSG00000250622', 'score': 11.83}, {'connected_gene': 'PDGFC', 'score': 11.83}, {'connected_gene': 'GC04P157065', 'score': 0.37}, {'connected_gene': 'RPPH1-3P', 'score': 0.21}]
chr4	GH04I156898	156898201	156898800	0.52	[{'connected_gene': 'ENSG00000250622', 'score': 11.33}, {'connected_gene': 'PDGFC', 'score': 11.33}, {'connected_gene': 'ENSG00000248629', 'score': 11.15}, {'connected_gene': 'ENSG00000278880', 'score': 0.39}]
chr4	GH04I156932	156932896	156935723	1.15	[{'connected_gene': 'ENSG00000250622', 'score': 11.31}, {'connected_gene': 'PDGFC', 'score': 11.31}, {'connected_gene': 'ENSG00000248629', 'score': 10.11}, {'connected_gene': 'ENSG00000278880', 'score': 0.25}]
chr4	GH04I156938	156938912	156940404	0.87	[{'connected_gene': 'ENSG00000250622', 'score': 11.56}, {'connected_gene': 'PDGFC', 'score': 11.56}, {'connected_gene': 'ENSG00000248629', 'score': 10.39}, {'connected_gene': 'ENSG00000278880', 'score': 0.23}]
chr4	GH04I156676	156676615	156678344	0.56	[{'connected_gene': 'ENSG00000250622', 'score': 10.29}, {'connected_gene': 'PDGFC', 'score': 10.29}, {'connected_gene': 'ENSG00000248629', 'score': 9.5}, {'connected_gene': 'ENSG00000248912', 'score': 0.44}, {'connected_gene': 'GC04P156646', 'score': 0.29}]
chr4	GH04I156888	156888336	156890755	0.51	[{'connected_gene': 'ENSG00000248629', 'score': 11.44}, {'connected_gene': 'ENSG00000278880', 'score': 0.77}, {'connected_gene': 'PDGFC', 'score': 0.18}]
chr4	GH04I156814	156814449	156816772	0.88	[{'connected_gene': 'ENSG00000248629', 'score': 12.14}, {'connected_gene': 'PDGFC', 'score': 5.14}, {'connected_gene': 'ENSG00000248912', 'score': 0.13}]
chr4	GH04I156798	156798201	156800010	0.72	[{'connected_gene': 'ENSG00000248629', 'score': 11.61}, {'connected_gene': 'PDGFC', 'score': 4.59}, {'connected_gene': 'ENSG00000248912', 'score': 0.14}]
chr4	GH04I156805	156805458	156807104	0.38	[{'connected_gene': 'ENSG00000248629', 'score': 11.28}, {'connected_gene': 'ENSG00000248912', 'score': 0.13}, {'connected_gene': 'PDGFC', 'score': 0.1}]
chr4	GH04I156960	156960612	156963828	1.1	[{'connected_gene': 'ENSG00000248629', 'score': 10.19}, {'connected_gene': 'PDGFC', 'score': 0.44}, {'connected_gene': 'ENSG00000278880', 'score': 0.18}]
chr4	GH04I156763	156763566	156765509	0.98	[{'connected_gene': 'ENSG00000248912', 'score': 0.18}, {'connected_gene': 'ENSG00000248629', 'score': 0.18}, {'connected_gene': 'PDGFC', 'score': 0.08}]
chr4	GH04I156884	156884201	156884400	0.2	[{'connected_gene': 'ENSG00000248629', 'score': 10.66}, {'connected_gene': 'ENSG00000278880', 'score': 0.77}, {'connected_gene': 'ENSG00000280284', 'score': 0.44}, {'connected_gene': 'PDGFC', 'score': 0.17}]