PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000599761	[[4641385, 4641662], [4659942, 4660015], [4660680, 4660762], [4664887, 4664918]]	[[4641594, 4641662], [4659942, 4660015], [4660680, 4660762], [4664887, 4664918]]
ENST00000262947	[[4657556, 4658096], [4659942, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670382]]	[[4658016, 4658096], [4659942, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670346]]
ENST00000599630	[[4659699, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670374]]	[[4659814, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670346]]
ENST00000596031	[[4660591, 4660762], [4664887, 4664949], [4668606, 4668708]]	None
NM_019107	[[4657556, 4658096], [4659942, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670415]]	[[4658016, 4658096], [4659942, 4660015], [4660680, 4660762], [4664887, 4664949], [4668606, 4668657], [4670172, 4670346]]

Promoter

Chrom	Start	End	Description
chr19	4670345	4670382	CAGE_peak_1_at_C19orf10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I004152	4152544	4155132	1.4	[{'connected_gene': 'CREB3L3', 'score': 550.77}, {'connected_gene': 'CACTIN-AS1', 'score': 12.77}, {'connected_gene': 'PIAS4', 'score': 10.18}, {'connected_gene': 'LRG1', 'score': 5.54}, {'connected_gene': 'MYDGF', 'score': 4.56}, {'connected_gene': 'GC19M004146', 'score': 0.77}]
chr19	GH19I004114	4114190	4116387	1.08	[{'connected_gene': 'MAP2K2', 'score': 5.82}, {'connected_gene': 'MYDGF', 'score': 5.4}, {'connected_gene': 'ZBTB7A', 'score': 4.96}]
chr19	GH19I004112	4112212	4112982	0.31	[{'connected_gene': 'MAP2K2', 'score': 5.68}, {'connected_gene': 'MYDGF', 'score': 5.36}, {'connected_gene': 'ZBTB7A', 'score': 0.25}]
chr19	GH19I004692	4692233	4698010	1.22	[{'connected_gene': 'MYDGF', 'score': 8.46}, {'connected_gene': 'GC19M004658', 'score': 0.39}, {'connected_gene': 'LOC105372250', 'score': 0.31}, {'connected_gene': 'DPP9', 'score': 0.31}]
chr19	GH19I004704	4704170	4706408	1.02	[{'connected_gene': 'MYDGF', 'score': 8.7}, {'connected_gene': 'LOC105372250', 'score': 0.37}, {'connected_gene': 'DPP9', 'score': 0.37}, {'connected_gene': 'GC19M004658', 'score': 0.34}]
chr19	GH19I004668	4668969	4671885	2.04	[{'connected_gene': 'MYDGF', 'score': 558.05}, {'connected_gene': 'SNRPEP4', 'score': 12.57}, {'connected_gene': 'HDGFL2', 'score': 11.42}, {'connected_gene': 'SAFB', 'score': 10.33}, {'connected_gene': 'DPP9-AS1', 'score': 0.44}, {'connected_gene': 'GC19M004658', 'score': 0.39}]
chr19	GH19I005155	5155230	5156904	0.43	[{'connected_gene': 'ZNRF4', 'score': 10.14}, {'connected_gene': 'MYDGF', 'score': 5.83}, {'connected_gene': 'PIR36975', 'score': 0.39}, {'connected_gene': 'GC19P005167', 'score': 0.39}]
chr19	GH19I004676	4676189	4677838	0.89	[{'connected_gene': 'DPP9-AS1', 'score': 0.77}, {'connected_gene': 'GC19M004658', 'score': 0.44}, {'connected_gene': 'MYDGF', 'score': 0.44}, {'connected_gene': 'DPP9', 'score': 0.25}]
chr19	GH19I005170	5170430	5175140	1.09	[{'connected_gene': 'SNRPEP4', 'score': 14.37}, {'connected_gene': 'DUS3L', 'score': 14.17}, {'connected_gene': 'CCDC94', 'score': 10.44}, {'connected_gene': 'PLIN3', 'score': 10.42}, {'connected_gene': 'SAFB2', 'score': 10.14}, {'connected_gene': 'MYDGF', 'score': 5.74}, {'connected_gene': 'PTPRS', 'score': 4.52}, {'connected_gene': 'ENSG00000267550', 'score': 0.44}, {'connected_gene': 'GC19P005167', 'score': 0.44}]
chr19	GH19I004644	4644668	4649076	0.86	[{'connected_gene': 'GC19M004643', 'score': 550.77}, {'connected_gene': 'MYDGF', 'score': 18.04}, {'connected_gene': 'DPP9', 'score': 12.28}, {'connected_gene': 'TNFAIP8L1', 'score': 5.75}, {'connected_gene': 'PIR47904', 'score': 0.44}]
chr19	GH19I004660	4660529	4660658	0.72	[{'connected_gene': 'GC19P004660', 'score': 550.77}, {'connected_gene': 'GC19P004657', 'score': 0.77}, {'connected_gene': 'MYDGF', 'score': 0.44}, {'connected_gene': 'GC19M004658', 'score': 0.34}]
chr19	GH19I004638	4638184	4641614	2.03	[{'connected_gene': 'GC19P004640', 'score': 550.77}, {'connected_gene': 'TNFAIP8L1', 'score': 550.77}, {'connected_gene': 'GC19M004643', 'score': 0.44}, {'connected_gene': 'MYDGF', 'score': 0.29}]
chr19	GH19I004678	4678597	4679662	0.66	[{'connected_gene': 'GC19P004682', 'score': 550.77}, {'connected_gene': 'DPP9-AS1', 'score': 550.77}, {'connected_gene': 'GC19M004658', 'score': 0.44}, {'connected_gene': 'MYDGF', 'score': 0.44}, {'connected_gene': 'DPP9', 'score': 0.25}]