PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000378190	[[4714791, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834618], [4837460, 4837854]]	[[4715485, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834559]]
ENST00000378191	[[4715104, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834618], [4842604, 4852594]]	[[4715485, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834559]]
ENST00000466761	[[4771214, 4771246], [4771959, 4772225]]	None
NM_001042478	[[4715104, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834618], [4837460, 4837854]]	[[4715485, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834559]]
NM_018836	[[4715104, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834618], [4842604, 4843851]]	[[4715485, 4715514], [4771959, 4772759], [4829912, 4830000], [4832339, 4832585], [4834486, 4834559]]

Promoter

Chrom	Start	End	Description
chr1	4714656	4714675	CAGE_peak_1_at_AJAP1_5end
chr1	4714687	4714694	CAGE_peak_3_at_AJAP1_5end
chr1	4714828	4714861	CAGE_peak_2_at_AJAP1_5end
chr1	4714881	4714892	CAGE_peak_4_at_AJAP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I004677	4677290	4688242	0.56	[{'connected_gene': 'CEP104', 'score': 10.91}, {'connected_gene': 'TP73-AS1', 'score': 9.96}, {'connected_gene': 'GC01M004696', 'score': 0.34}, {'connected_gene': 'GC01P004654', 'score': 0.31}, {'connected_gene': 'AJAP1', 'score': 0.31}]
chr1	GH01I004674	4674547	4675266	0.31	[{'connected_gene': 'AJAP1', 'score': 12.94}, {'connected_gene': 'GC01P004654', 'score': 0.34}, {'connected_gene': 'GC01M004696', 'score': 0.31}]
chr1	GH01I004735	4735801	4737000	0.31	[{'connected_gene': 'AJAP1', 'score': 4.81}, {'connected_gene': 'GC01M004696', 'score': 0.29}, {'connected_gene': 'PIR48322', 'score': 0.23}]
chr1	GH01I004754	4754792	4756456	0.38	[{'connected_gene': 'AJAP1', 'score': 6.47}, {'connected_gene': 'PIR48322', 'score': 0.29}, {'connected_gene': 'GC01M004696', 'score': 0.23}]
chr1	GH01I004676	4676210	4676473	0.42	[{'connected_gene': 'AJAP1', 'score': 12.94}, {'connected_gene': 'GC01P004654', 'score': 0.34}, {'connected_gene': 'GC01M004696', 'score': 0.31}]
chr1	GH01I004675	4675601	4675750	0.4	[{'connected_gene': 'AJAP1', 'score': 12.94}, {'connected_gene': 'GC01P004654', 'score': 0.34}, {'connected_gene': 'GC01M004696', 'score': 0.31}]
chr1	GH01I004668	4668383	4670223	0.43	[{'connected_gene': 'AJAP1', 'score': 2.04}, {'connected_gene': 'GC01P004654', 'score': 0.39}, {'connected_gene': 'GC01M004696', 'score': 0.29}]
chr1	GH01I004650	4650034	4651504	0.46	[{'connected_gene': 'AJAP1', 'score': 0.77}, {'connected_gene': 'GC01M004619', 'score': 0.31}]
chr1	GH01I004696	4696393	4697108	0.31	[{'connected_gene': 'GC01M004696', 'score': 0.44}, {'connected_gene': 'GC01P004654', 'score': 0.26}, {'connected_gene': 'AJAP1', 'score': 0.26}]
chr1	GH01I004702	4702333	4704065	0.66	[{'connected_gene': 'GC01M004696', 'score': 550.77}, {'connected_gene': 'GC01P004654', 'score': 0.25}, {'connected_gene': 'AJAP1', 'score': 0.25}]
chr1	GH01I004673	4673489	4674528	0.31	[{'connected_gene': 'GC01P004654', 'score': 0.37}, {'connected_gene': 'AJAP1', 'score': 0.37}, {'connected_gene': 'GC01M004696', 'score': 0.29}]
chr1	GH01I004708	4708187	4710627	0.43	[{'connected_gene': 'GC01M004696', 'score': 0.44}, {'connected_gene': 'AJAP1', 'score': 0.23}, {'connected_gene': 'PIR48322', 'score': 0.18}]
chr1	GH01I004697	4697733	4701634	0.46	[{'connected_gene': 'GC01M004696', 'score': 0.77}, {'connected_gene': 'GC01P004654', 'score': 0.26}, {'connected_gene': 'AJAP1', 'score': 0.26}]
chr1	GH01I004712	4712392	4715142	0.31	[{'connected_gene': 'GC01M004696', 'score': 0.44}, {'connected_gene': 'AJAP1', 'score': 0.22}, {'connected_gene': 'PIR48322', 'score': 0.19}]
chr1	GH01I004652	4652492	4657021	1.6	[{'connected_gene': 'GC01P004654', 'score': 550.77}, {'connected_gene': 'AJAP1', 'score': 550.77}]
chr1	GH01I004711	4711241	4711290	0.72	[{'connected_gene': 'GC01M004696', 'score': 0.44}, {'connected_gene': 'AJAP1', 'score': 0.22}, {'connected_gene': 'PIR48322', 'score': 0.18}]
chr1	GH01I004658	4658183	4658990	0.4	[{'connected_gene': 'GC01P004654', 'score': 0.77}, {'connected_gene': 'AJAP1', 'score': 0.77}, {'connected_gene': 'GC01M004696', 'score': 0.25}]
chr1	GH01I004661	4661808	4666319	0.43	[{'connected_gene': 'GC01P004654', 'score': 0.44}, {'connected_gene': 'AJAP1', 'score': 0.44}, {'connected_gene': 'GC01M004696', 'score': 0.26}]
chr1	GH01I004688	4688968	4691822	0.31	[{'connected_gene': 'GC01M004696', 'score': 0.39}, {'connected_gene': 'GC01P004654', 'score': 0.28}, {'connected_gene': 'AJAP1', 'score': 0.28}]
chr1	GH01I004006	4006716	4008311	0.88	[{'connected_gene': 'PIR57428', 'score': 550.77}, {'connected_gene': 'WRAP73', 'score': 21.21}, {'connected_gene': 'C1orf174', 'score': 19.08}, {'connected_gene': 'AJAP1', 'score': 5.75}, {'connected_gene': 'LOC105376673', 'score': 0.29}]