PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000245046	[[10004220, 10005881], [10011402, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10028190, 10028804]]	[[10005752, 10005881], [10011402, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10028190, 10028345]]
ENST00000487465	[[10010327, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10028190, 10028522]]	None
ENST00000497557	[[10011412, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10019893, 10019981]]	None
ENST00000429759	[[10015189, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10023317, 10023431], [10028190, 10028366]]	[[10015307, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10023317, 10023431], [10028190, 10028345]]
ENST00000470827	[[10018712, 10018734], [10019072, 10019130], [10028190, 10028586], [10052706, 10052800]]	[[10018712, 10018734], [10019072, 10019130], [10028190, 10028345]]
NM_018447	[[10004363, 10005881], [10011402, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10028190, 10028586], [10052706, 10052932]]	[[10005752, 10005881], [10011402, 10011485], [10012265, 10012345], [10015311, 10015393], [10016067, 10016172], [10018640, 10018734], [10019072, 10019130], [10028190, 10028345]]

Promoter

Chrom	Start	End	Description
chr3	10028471	10028552	CAGE_peak_1_at_TMEM111_5end
chr3	10029074	10029081	CAGE_peak_4_at_TMEM111_5end
chr3	10052763	10052816	CAGE_peak_2_at_TMEM111_5end
chr3	10052818	10052836	CAGE_peak_3_at_TMEM111_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I009969	9969155	9971726	0.69	[{'connected_gene': 'BRK1', 'score': 15.74}, {'connected_gene': 'FANCD2OS', 'score': 15.04}, {'connected_gene': 'IL17RC', 'score': 11.15}, {'connected_gene': 'RNU6-882P', 'score': 11.15}, {'connected_gene': 'IL17RE', 'score': 11.12}, {'connected_gene': 'CIDECP', 'score': 10.75}, {'connected_gene': 'FANCD2', 'score': 10.75}, {'connected_gene': 'VHL', 'score': 10.58}, {'connected_gene': 'RPUSD3', 'score': 10.54}, {'connected_gene': 'JAGN1', 'score': 10.42}, {'connected_gene': 'RNU6-670P', 'score': 10.4}, {'connected_gene': 'TTLL3', 'score': 10.03}, {'connected_gene': 'IRAK2', 'score': 9.97}, {'connected_gene': 'TADA3', 'score': 9.68}, {'connected_gene': 'ARPC4', 'score': 9.68}, {'connected_gene': 'ARPC4-TTLL3', 'score': 9.68}, {'connected_gene': 'PIR52243', 'score': 0.44}, {'connected_gene': 'PIR57234', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.26}]
chr3	GH03I009985	9985889	9988375	2.1	[{'connected_gene': 'EMC3-AS1', 'score': 550.77}, {'connected_gene': 'EMC3', 'score': 550.34}, {'connected_gene': 'FANCD2', 'score': 22.03}, {'connected_gene': 'BRPF1', 'score': 19.85}, {'connected_gene': 'BRK1', 'score': 15.69}, {'connected_gene': 'GHRLOS', 'score': 13.16}, {'connected_gene': 'RNU6-670P', 'score': 12.35}, {'connected_gene': 'FANCD2OS', 'score': 11.73}, {'connected_gene': 'PRRT3', 'score': 11.48}, {'connected_gene': 'SETD5', 'score': 11.07}, {'connected_gene': 'RPUSD3', 'score': 11.06}, {'connected_gene': 'SEC13', 'score': 10.98}, {'connected_gene': 'GHRL', 'score': 10.5}, {'connected_gene': 'TTLL3', 'score': 10.31}, {'connected_gene': 'CRELD1', 'score': 7.35}, {'connected_gene': 'FANCD2P1', 'score': 0.44}]
chr3	GH03I009983	9983048	9983226	0.65	[{'connected_gene': 'TTLL3', 'score': 23.24}, {'connected_gene': 'BRPF1', 'score': 16.68}, {'connected_gene': 'SETD5', 'score': 13.02}, {'connected_gene': 'FANCD2', 'score': 12.38}, {'connected_gene': 'RNU6-670P', 'score': 12.35}, {'connected_gene': 'PRRT3', 'score': 11.48}, {'connected_gene': 'GHRLOS', 'score': 11.37}, {'connected_gene': 'RPUSD3', 'score': 11.07}, {'connected_gene': 'THUMPD3-AS1', 'score': 10.95}, {'connected_gene': 'GHRL', 'score': 10.5}, {'connected_gene': 'EMC3-AS1', 'score': 0.77}, {'connected_gene': 'PIR57234', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.31}]
chr3	GH03I009995	9994601	9994800	0.31	[{'connected_gene': 'FANCD2P1', 'score': 550.77}, {'connected_gene': 'BRK1', 'score': 15.69}, {'connected_gene': 'CIDECP', 'score': 12.29}, {'connected_gene': 'FANCD2', 'score': 12.29}, {'connected_gene': 'RNU6-670P', 'score': 11.9}, {'connected_gene': 'ENSG00000206567', 'score': 4.85}, {'connected_gene': 'EMC3-AS1', 'score': 0.44}, {'connected_gene': 'CYCSP10', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.37}]
chr3	GH03I009994	9994033	9994496	0.51	[{'connected_gene': 'FANCD2P1', 'score': 550.77}, {'connected_gene': 'BRK1', 'score': 14.58}, {'connected_gene': 'CIDECP', 'score': 12.29}, {'connected_gene': 'FANCD2', 'score': 12.29}, {'connected_gene': 'RNU6-670P', 'score': 11.9}, {'connected_gene': 'EMC3-AS1', 'score': 0.44}, {'connected_gene': 'CYCSP10', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.37}]
chr3	GH03I010008	10008675	10011786	1.43	[{'connected_gene': 'ENSG00000206567', 'score': 550.77}, {'connected_gene': 'EMC3', 'score': 550.77}, {'connected_gene': 'JAGN1', 'score': 24.53}, {'connected_gene': 'SETD5', 'score': 17.04}, {'connected_gene': 'BRPF1', 'score': 14.67}, {'connected_gene': 'BRK1', 'score': 14.41}, {'connected_gene': 'RNU6-670P', 'score': 11.12}, {'connected_gene': 'FANCD2', 'score': 11.04}, {'connected_gene': 'IL17RE', 'score': 10.88}, {'connected_gene': 'PRRT3', 'score': 10.81}, {'connected_gene': 'SEC13', 'score': 10.49}, {'connected_gene': 'IRAK2', 'score': 10.37}, {'connected_gene': 'RPUSD3', 'score': 10.14}, {'connected_gene': 'CRELD1', 'score': 7.13}, {'connected_gene': 'FANCD2OS', 'score': 6.93}, {'connected_gene': 'PIR31706', 'score': 0.77}]
chr3	GH03I009975	9975795	9980631	1.47	[{'connected_gene': 'PIR57234', 'score': 550.77}, {'connected_gene': 'FANCD2', 'score': 22.17}, {'connected_gene': 'TTLL3', 'score': 21.73}, {'connected_gene': 'BRPF1', 'score': 19.79}, {'connected_gene': 'THUMPD3-AS1', 'score': 19.48}, {'connected_gene': 'BRK1', 'score': 16.36}, {'connected_gene': 'SETD5', 'score': 15.45}, {'connected_gene': 'PRRT3', 'score': 11.75}, {'connected_gene': 'CIDECP', 'score': 11.48}, {'connected_gene': 'ENSG00000269894', 'score': 11.31}, {'connected_gene': 'IL17RE', 'score': 11.1}, {'connected_gene': 'RPUSD3', 'score': 10.94}, {'connected_gene': 'VHL', 'score': 10.83}, {'connected_gene': 'JAGN1', 'score': 10.55}, {'connected_gene': 'LINC00852', 'score': 10.24}, {'connected_gene': 'TADA3', 'score': 10.12}, {'connected_gene': 'ARPC4', 'score': 10.12}, {'connected_gene': 'ARPC4-TTLL3', 'score': 10.12}, {'connected_gene': 'GHRL', 'score': 10.11}, {'connected_gene': 'IRAK2', 'score': 9.9}, {'connected_gene': 'EMC3-AS1', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.29}]