PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_001290205	[[53317442, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353500], [53372117, 53372172], [53376170, 53376298], [53378928, 53378969], [53381409, 53381654]]	[[53321597, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353500], [53372117, 53372172], [53376170, 53376203]]
NM_018403	[[53317442, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353500], [53376170, 53376298], [53378928, 53378969], [53381409, 53381654]]	[[53321597, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353500], [53376170, 53376298], [53378928, 53378969], [53381409, 53381544]]
NM_001290204	[[53317442, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53346270, 53346409], [53353433, 53353500], [53376170, 53376298], [53378928, 53378969], [53381409, 53381654]]	[[53321597, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53346270, 53346409], [53353433, 53353500], [53376170, 53376298], [53378928, 53378969], [53381409, 53381544]]
NM_001290206	[[53317442, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353500], [53378928, 53378969], [53381409, 53381654]]	[[53321597, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53338206, 53338320], [53346270, 53346409], [53353433, 53353441]]
NM_001290207	[[53317442, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53346270, 53346409], [53353433, 53353500], [53378928, 53378969], [53381409, 53381654]]	[[53321597, 53321678], [53322082, 53322301], [53324814, 53324886], [53326098, 53326857], [53346270, 53346409], [53353433, 53353441]]

Promoter

Chrom	Start	End	Description
chr3	53324763	53324768	CAGE_peak_2_at_DCP1A_5end
chr3	53381527	53381538	CAGE_peak_3_at_DCP1A_5end
chr3	53381539	53381577	CAGE_peak_1_at_DCP1A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I053195	53195653	53197472	1.37	[{'connected_gene': 'RFT1', 'score': 24.68}, {'connected_gene': 'PRKCD', 'score': 20.67}, {'connected_gene': 'PBRM1', 'score': 9.81}, {'connected_gene': 'SNORD38C', 'score': 9.76}, {'connected_gene': 'TKT', 'score': 5.88}, {'connected_gene': 'DCP1A', 'score': 4.27}, {'connected_gene': 'ITIH4', 'score': 4.07}]
chr3	GH03I053071	53071868	53074132	1.33	[{'connected_gene': 'RFT1', 'score': 44.58}, {'connected_gene': 'ITIH4', 'score': 22.54}, {'connected_gene': 'STIMATE', 'score': 12.17}, {'connected_gene': 'ITIH1', 'score': 11.22}, {'connected_gene': 'TMEM110-MUSTN1', 'score': 10.41}, {'connected_gene': 'ENSG00000243696', 'score': 10.39}, {'connected_gene': 'MUSTN1', 'score': 10.39}, {'connected_gene': 'SFMBT1', 'score': 2.81}, {'connected_gene': 'DCP1A', 'score': 1.94}, {'connected_gene': 'GC03M053066', 'score': 0.77}, {'connected_gene': 'SERBP1P3', 'score': 0.44}, {'connected_gene': 'ENSG00000272305', 'score': 0.31}]
chr3	GH03I053227	53227362	53233773	0.46	[{'connected_gene': 'RFT1', 'score': 11.43}, {'connected_gene': 'SNORD38C', 'score': 10.13}, {'connected_gene': 'TKT', 'score': 7.13}, {'connected_gene': 'PRKCD', 'score': 5.36}, {'connected_gene': 'DCP1A', 'score': 5.1}, {'connected_gene': 'ITIH4', 'score': 4.14}]
chr3	GH03I053492	53492724	53495000	1.89	[{'connected_gene': 'CACNA1D', 'score': 550.1}, {'connected_gene': 'ACTR8', 'score': 5.11}, {'connected_gene': 'DCP1A', 'score': 4.35}, {'connected_gene': 'TKT', 'score': 4.31}, {'connected_gene': 'RFT1', 'score': 3.97}, {'connected_gene': 'RPS25P4', 'score': 0.37}, {'connected_gene': 'GC03P053524', 'score': 0.29}]
chr3	GH03I053327	53327952	53329543	0.57	[{'connected_gene': 'CACNA1D', 'score': 550.77}, {'connected_gene': 'TKT', 'score': 5.99}, {'connected_gene': 'SFMBT1', 'score': 4.7}, {'connected_gene': 'DCP1A', 'score': 0.37}, {'connected_gene': 'GC03P053298', 'score': 0.29}]
chr3	GH03I053320	53320514	53321534	0.46	[{'connected_gene': 'CACNA1D', 'score': 0.44}, {'connected_gene': 'GC03P053298', 'score': 0.34}, {'connected_gene': 'DCP1A', 'score': 0.31}]
chr3	GH03I053217	53217453	53218895	0.38	[{'connected_gene': 'TKT', 'score': 7.07}, {'connected_gene': 'DCP1A', 'score': 5.23}, {'connected_gene': 'PRKCD', 'score': 0.21}]
chr3	GH03I053248	53248930	53256572	2.49	[{'connected_gene': 'TKT', 'score': 560.47}, {'connected_gene': 'PRKCD', 'score': 13.4}, {'connected_gene': 'DCP1A', 'score': 3.73}]
chr3	GH03I053140	53140402	53141800	1.43	[{'connected_gene': 'GLT8D1', 'score': 24.09}, {'connected_gene': 'RFT1', 'score': 22.26}, {'connected_gene': 'NISCH', 'score': 19.52}, {'connected_gene': 'PRKCD', 'score': 14.47}, {'connected_gene': 'ACTR8', 'score': 11.38}, {'connected_gene': 'NEK4', 'score': 11.24}, {'connected_gene': 'STIMATE', 'score': 8.07}, {'connected_gene': 'ITIH4', 'score': 7.34}, {'connected_gene': 'DCP1A', 'score': 6.17}, {'connected_gene': 'ITIH3', 'score': 4.87}, {'connected_gene': 'PBRM1', 'score': 1.98}, {'connected_gene': 'TKT', 'score': 1.23}, {'connected_gene': 'PIR59540', 'score': 0.77}]
chr3	GH03I053221	53221972	53222831	0.8	[{'connected_gene': 'DCP1A', 'score': 4.98}, {'connected_gene': 'TKT', 'score': 0.29}, {'connected_gene': 'PRKCD', 'score': 0.2}]
chr3	GH03I053477	53477526	53480835	1.11	[{'connected_gene': 'DCP1A', 'score': 5.08}, {'connected_gene': 'PRKCD', 'score': 4.63}, {'connected_gene': 'RPS25P4', 'score': 0.77}, {'connected_gene': 'GC03P053524', 'score': 0.25}, {'connected_gene': 'CACNA1D', 'score': 0.1}]
chr3	GH03I053497	53497703	53500205	0.71	[{'connected_gene': 'DCP1A', 'score': 5.84}, {'connected_gene': 'RPS25P4', 'score': 0.34}, {'connected_gene': 'GC03P053524', 'score': 0.31}, {'connected_gene': 'CACNA1D', 'score': 0.1}]
chr3	GH03I053345	53345960	53348690	2.35	[{'connected_gene': 'DCP1A', 'score': 561.19}, {'connected_gene': 'NISCH', 'score': 37.22}, {'connected_gene': 'PBRM1', 'score': 23.95}, {'connected_gene': 'ENSG00000271976', 'score': 20.08}, {'connected_gene': 'RFT1', 'score': 13.15}, {'connected_gene': 'PHF7', 'score': 11.26}, {'connected_gene': 'ENSG00000212608', 'score': 11.08}, {'connected_gene': 'PRKCD', 'score': 10.97}, {'connected_gene': 'NEK4', 'score': 10.4}, {'connected_gene': 'ACTR8', 'score': 10.35}, {'connected_gene': 'GNL3', 'score': 10.14}, {'connected_gene': 'NT5DC2', 'score': 9.91}, {'connected_gene': 'TKT', 'score': 5.96}, {'connected_gene': 'STIMATE', 'score': 2.31}, {'connected_gene': 'SNORD38C', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.37}, {'connected_gene': 'GC03P053298', 'score': 0.25}]
chr3	GH03I053247	53247490	53248751	0.52	[{'connected_gene': 'PRKCD', 'score': 5.29}, {'connected_gene': 'DCP1A', 'score': 4.78}, {'connected_gene': 'TKT', 'score': 4.77}, {'connected_gene': 'GNL3', 'score': 4.03}]
chr3	GH03I053102	53102581	53103137	1.14	[{'connected_gene': 'PRKCD', 'score': 16.77}, {'connected_gene': 'STIMATE', 'score': 12.59}, {'connected_gene': 'RFT1', 'score': 11.9}, {'connected_gene': 'ENSG00000243696', 'score': 10.61}, {'connected_gene': 'TMEM110-MUSTN1', 'score': 9.9}, {'connected_gene': 'MUSTN1', 'score': 9.89}, {'connected_gene': 'DCP1A', 'score': 4.25}, {'connected_gene': 'PBRM1', 'score': 2.72}, {'connected_gene': 'ENSG00000272305', 'score': 0.77}]
chr3	GH03I053165	53165269	53172654	1.36	[{'connected_gene': 'PRKCD', 'score': 21.13}, {'connected_gene': 'STIMATE', 'score': 5.73}, {'connected_gene': 'GLT8D1', 'score': 4.48}, {'connected_gene': 'TKT', 'score': 4.29}, {'connected_gene': 'GNL3', 'score': 4.13}, {'connected_gene': 'DCP1A', 'score': 3.57}, {'connected_gene': 'PBRM1', 'score': 2.75}]
chr3	GH03I053233	53233941	53244847	1.64	[{'connected_gene': 'PRKCD', 'score': 23.47}, {'connected_gene': 'SNORD38C', 'score': 11.33}, {'connected_gene': 'TKT', 'score': 8.84}, {'connected_gene': 'DCP1A', 'score': 7.03}, {'connected_gene': 'ITIH4', 'score': 5.89}, {'connected_gene': 'GNL3', 'score': 4.76}, {'connected_gene': 'STIMATE', 'score': 1.37}]
chr3	GH03I053268	53268602	53272151	1.75	[{'connected_gene': 'PRKCD', 'score': 12.82}, {'connected_gene': 'SNORD38C', 'score': 11.24}, {'connected_gene': 'TKT', 'score': 8.66}, {'connected_gene': 'SFMBT1', 'score': 4.75}, {'connected_gene': 'DCP1A', 'score': 3.4}, {'connected_gene': 'PIR47365', 'score': 0.39}, {'connected_gene': 'GC03M053284', 'score': 0.39}]
chr3	GH03I053747	53747975	53750825	1.15	[{'connected_gene': 'IL17RB', 'score': 9.12}, {'connected_gene': 'SELENOK', 'score': 2.88}, {'connected_gene': 'DCP1A', 'score': 2.03}, {'connected_gene': 'GC03P053782', 'score': 0.29}, {'connected_gene': 'PIR47826', 'score': 0.2}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053354	53354779	53355851	1.09	[{'connected_gene': 'PBRM1', 'score': 17.32}, {'connected_gene': 'SNORD38C', 'score': 11.61}, {'connected_gene': 'ENSG00000212608', 'score': 11.11}, {'connected_gene': 'GLT8D1', 'score': 10.4}, {'connected_gene': 'GNL3', 'score': 10.07}, {'connected_gene': 'DCP1A', 'score': 10.05}, {'connected_gene': 'RFT1', 'score': 9.9}, {'connected_gene': 'TKT', 'score': 5.96}, {'connected_gene': 'LOC105377094', 'score': 0.37}, {'connected_gene': 'CACNA1D', 'score': 0.31}, {'connected_gene': 'GC03P053298', 'score': 0.22}]
chr3	GH03I052915	52915001	52915800	0.8	[{'connected_gene': 'ITIH4', 'score': 22.35}, {'connected_gene': 'ENSG00000243696', 'score': 10.6}, {'connected_gene': 'MUSTN1', 'score': 10.12}, {'connected_gene': 'PRKCD', 'score': 3.06}, {'connected_gene': 'DCP1A', 'score': 1.7}, {'connected_gene': 'STIMATE', 'score': 0.37}, {'connected_gene': 'LOC105377135', 'score': 0.18}, {'connected_gene': 'SFMBT1', 'score': 0.12}]
chr3	GH03I052890	52890491	52894757	1.36	[{'connected_gene': 'ITIH4', 'score': 44.87}, {'connected_gene': 'ENSG00000243696', 'score': 11.17}, {'connected_gene': 'ITIH4-AS1', 'score': 11.15}, {'connected_gene': 'PBRM1', 'score': 10.72}, {'connected_gene': 'MUSTN1', 'score': 10.68}, {'connected_gene': 'SNORD69', 'score': 9.64}, {'connected_gene': 'ENSG00000222345', 'score': 9.64}, {'connected_gene': 'SNORD19B', 'score': 9.64}, {'connected_gene': 'SNORD19', 'score': 9.64}, {'connected_gene': 'ENSG00000252787', 'score': 9.64}, {'connected_gene': 'GNL3', 'score': 9.64}, {'connected_gene': 'STIMATE', 'score': 5.64}, {'connected_gene': 'DCP1A', 'score': 5.23}, {'connected_gene': 'PRKCD', 'score': 4.12}, {'connected_gene': 'SFMBT1', 'score': 1.71}, {'connected_gene': 'TMEM110-MUSTN1', 'score': 0.77}, {'connected_gene': 'ENSG00000279144', 'score': 0.26}]
chr3	GH03I053371	53371001	53371200	0.2	[{'connected_gene': 'LOC105377094', 'score': 550.77}, {'connected_gene': 'DCP1A', 'score': 0.34}, {'connected_gene': 'CACNA1D', 'score': 0.26}, {'connected_gene': 'GC03P053298', 'score': 0.19}]
chr3	GH03I053350	53350600	53351200	1.08	[{'connected_gene': 'ENSG00000212608', 'score': 11.1}, {'connected_gene': 'DCP1A', 'score': 0.77}, {'connected_gene': 'CACNA1D', 'score': 0.34}, {'connected_gene': 'LOC105377094', 'score': 0.34}, {'connected_gene': 'GC03P053298', 'score': 0.23}]
chr3	GH03I053423	53423098	53423783	0.54	[{'connected_gene': 'ENSG00000212608', 'score': 11.79}, {'connected_gene': 'PRKCD', 'score': 4.69}, {'connected_gene': 'DCP1A', 'score': 4.45}, {'connected_gene': 'GC03M053387', 'score': 0.28}, {'connected_gene': 'GC03P053472', 'score': 0.25}, {'connected_gene': 'CACNA1D', 'score': 0.16}]
chr3	GH03I053286	53286455	53288598	0.43	[{'connected_gene': 'GC03P053288', 'score': 550.77}, {'connected_gene': 'SNORD38C', 'score': 11.24}, {'connected_gene': 'RFT1', 'score': 9.75}, {'connected_gene': 'TKT', 'score': 8.48}, {'connected_gene': 'GC03M053283', 'score': 0.77}, {'connected_gene': 'GC03M053287', 'score': 0.77}, {'connected_gene': 'DCP1A', 'score': 0.21}]