PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000502917	[[4269427, 4269750], [4270256, 4270659]]	None
ENST00000343470	[[4269427, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285522], [4288245, 4288299], [4291762, 4291896]]	[[4269615, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285469]]
ENST00000452476	[[4269430, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285522], [4288245, 4288299], [4291712, 4291748]]	[[4269615, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285469]]
ENST00000513174	[[4283509, 4283624], [4285347, 4285522], [4288245, 4288299], [4291329, 4291765]]	[[4283509, 4283624], [4285347, 4285469]]
NM_001145725	[[4269427, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285522], [4288245, 4288299], [4291712, 4291748]]	[[4269615, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285469]]
NM_017816	[[4269427, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285522], [4288245, 4288299], [4291762, 4291896]]	[[4269615, 4269750], [4270256, 4270342], [4275309, 4275396], [4276093, 4276496], [4281173, 4281257], [4281368, 4281476], [4283509, 4283624], [4285347, 4285469]]

Promoter

Chrom	Start	End	Description
chr4	4291751	4291760	CAGE_peak_12_at_LYAR_5end
chr4	4291761	4291766	CAGE_peak_15_at_LYAR_5end
chr4	4291780	4291807	CAGE_peak_4_at_LYAR_5end
chr4	4291811	4291822	CAGE_peak_5_at_LYAR_5end
chr4	4291837	4291859	CAGE_peak_2_at_LYAR_5end
chr4	4291861	4291913	CAGE_peak_1_at_LYAR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I004215	4215757	4217771	0.51	[{'connected_gene': 'TMEM128', 'score': 20.98}, {'connected_gene': 'OR7E99P', 'score': 5.56}, {'connected_gene': 'LYAR', 'score': 4.7}, {'connected_gene': 'OTOP1', 'score': 0.39}, {'connected_gene': 'PIR49722', 'score': 0.31}]
chr4	GH04I004264	4264966	4272431	1.24	[{'connected_gene': 'TMEM128', 'score': 21.37}, {'connected_gene': 'LYAR', 'score': 16.48}, {'connected_gene': 'ZBTB49', 'score': 1.55}, {'connected_gene': 'GC04P004281', 'score': 0.39}]
chr4	GH04I004327	4327496	4328343	1.05	[{'connected_gene': 'LYAR', 'score': 16.17}, {'connected_gene': 'TMEM128', 'score': 11.5}, {'connected_gene': 'ADRA2C', 'score': 5.58}, {'connected_gene': 'NSG1', 'score': 4.97}, {'connected_gene': 'ENSG00000248516', 'score': 0.44}, {'connected_gene': 'PIR59167', 'score': 0.44}]
chr4	GH04I004345	4345054	4345183	0.54	[{'connected_gene': 'LYAR', 'score': 5.1}, {'connected_gene': 'NSG1', 'score': 0.77}, {'connected_gene': 'PIR59167', 'score': 0.39}]
chr4	GH04I004323	4323298	4324910	1.05	[{'connected_gene': 'LYAR', 'score': 28.01}, {'connected_gene': 'ZBTB49', 'score': 21.67}, {'connected_gene': 'TMEM128', 'score': 11.01}, {'connected_gene': 'ENSG00000248516', 'score': 0.77}, {'connected_gene': 'PIR59167', 'score': 0.44}]
chr4	GH04I004288	4288775	4291201	1.99	[{'connected_gene': 'LYAR', 'score': 589.65}, {'connected_gene': 'ZBTB49', 'score': 558.35}, {'connected_gene': 'GC04P004281', 'score': 0.44}]
chr4	GH04I004308	4308366	4310361	0.2	[{'connected_gene': 'LYAR', 'score': 33.25}, {'connected_gene': 'ZBTB49', 'score': 9.17}, {'connected_gene': 'GC04M004314', 'score': 0.44}]
chr4	GH04I004284	4284934	4285203	0.6	[{'connected_gene': 'LYAR', 'score': 39.6}, {'connected_gene': 'GC04P004281', 'score': 0.77}]
chr4	GH04I004347	4347941	4349350	0.49	[{'connected_gene': 'NSG1', 'score': 593.99}, {'connected_gene': 'TMEM128', 'score': 10.94}, {'connected_gene': 'LYAR', 'score': 6.41}, {'connected_gene': 'STX18-IT1', 'score': 0.12}]
chr4	GH04I004277	4277148	4277902	0.31	[{'connected_gene': 'ZBTB49', 'score': 7.21}, {'connected_gene': 'GC04P004281', 'score': 0.77}, {'connected_gene': 'LYAR', 'score': 0.39}, {'connected_gene': 'TMEM128', 'score': 0.31}]
chr4	GH04I003826	3826719	3829224	1.35	[{'connected_gene': 'ADRA2C', 'score': 4.33}, {'connected_gene': 'LYAR', 'score': 1.28}, {'connected_gene': 'GC04P003863', 'score': 0.28}]
chr4	GH04I004332	4332987	4333604	0.56	[{'connected_gene': 'PIR59167', 'score': 550.77}, {'connected_gene': 'LYAR', 'score': 12.23}, {'connected_gene': 'TMEM128', 'score': 11.49}, {'connected_gene': 'NSG1', 'score': 7.37}, {'connected_gene': 'ENSG00000248516', 'score': 0.39}]
chr4	GH04I004335	4335200	4335565	0.98	[{'connected_gene': 'PIR59167', 'score': 550.77}, {'connected_gene': 'LYAR', 'score': 11.53}, {'connected_gene': 'NSG1', 'score': 0.39}]