PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
HSPA5	0	STIP1	1	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
ULK1	8	MTOR	14	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dunlop EA (2011), Rui YN (2015), Rui YN (2015)	3
PSMA2	1	PSMA3	1	affinity chromatography technology, biochemical, two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Claverol S (2002), Apcher GS (2004), Jayarapu K (2004), Nandi D (1997), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	10
HSPA5	0	DNAJB1	1	affinity chromatography technology	Hein MY (2015)	1
HSPA8	4	TUBA1A	13	affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014)	2
PSMB5	3	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	STIP1	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMC5	4	PSMA6	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	PSMC1	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC5	4	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC2	2	PSMA6	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	STUB1	4	affinity chromatography technology	Rodriguez J (2016)	1
PSMB2	0	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	PSMD3	5	affinity chromatography technology	Antonioli M (2014)	1
BCL2	0	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Xu C (2011), Xu C (2011), Trisciuoglio D (2010)	3
TRAF6	0	UBC	7	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study	Muroi M (2011), Park S (2013), Sun L (2004), Kanayama A (2004), Sakamoto H (2015), Yu J (2016), Middleton AJ (2017)	7
PSMB3	0	PSMD8	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
DDA1	1	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Olma MH (2009), Jin J (2006), Hein MY (2015)	3
PSMC4	6	PSMC1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Um JW (2010), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
PPP2R1A	8	STUB1	4	affinity chromatography technology	Kong M (2009)	1
UBC	7	DNAJB1	1	affinity chromatography technology	Matsumoto M (2005)	1
PRKN	1	PSMB2	0	affinity chromatography technology	Sarraf SA (2013)	1
PSMA7	1	PSMB3	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
CAMKMT	1	CCT8	0	affinity chromatography technology	Cloutier P (2013)	1
UBC	7	CCT8	0	affinity chromatography technology	Bish RA (2007)	1
MAPK6	1	BAG2	0	affinity chromatography technology	Rodriguez J (2016)	1
LRRC29	0	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
PSMA4	0	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RFPL4B	0	DDA1	1	affinity chromatography technology	Huttlin EL (2017)	1
EGLN3	0	PSMC5	4	affinity chromatography technology	Rodriguez J (2016)	1
PSMD6	0	PSMC5	4	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
CCT2	1	PSMD2	2	pull down	Lin YF (2012)	1
MAPK6	1	SUGT1	1	affinity chromatography technology	Rodriguez J (2016)	1
UBC	7	PSMB2	0	affinity chromatography technology	Matsumoto M (2005)	1
VPS50	3	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
PSMA6	1	PSMA3	1	two hybrid, biochemical, affinity chromatography technology, biochemical, pull down, biochemical, affinity chromatography technology, two hybrid, biochemical, two hybrid	Stelzl U (2005), Gerards WL (1998), Nandi D (1997), Havugimana PC (2012), Stelzl U (2005), Kristensen AR (2012), Hirano Y (2006), Rolland T (2014), Wan C (2015), Yu H (2011)	10
AMBRA1	7	PSMC6	0	affinity chromatography technology	Antonioli M (2014)	1
PSMA1	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical	Isakov E (2011), Havugimana PC (2012), Wan C (2015)	3
DYNC1I1	1	AMBRA1	7	affinity chromatography technology	Di Bartolomeo S (2010)	1
PSMA5	0	PSMA6	1	biochemical, biochemical, affinity chromatography technology, biochemical	Havugimana PC (2012), Kristensen AR (2012), Hirano Y (2006), Wan C (2015)	4
PSMD13	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
AMBRA1	7	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
PSMC6	0	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA1	1	PSMB3	0	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
MYC	2	PSMC4	6	affinity chromatography technology	Koch HB (2007)	1
CUL4A	2	HSPD1	0	affinity chromatography technology	Bennett EJ (2010)	1
HSPA8	4	BAG2	0	two hybrid, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical	Takayama S (1999), Takayama S (1999), Takayama S (1999), Arndt V (2005), Arndt V (2005), Hegele A (2012), Hegele A (2012), Taipale M (2014), Taipale M (2014), Wan C (2015)	10
PSMA7	1	PSMD3	5	biochemical	Havugimana PC (2012)	1
DCAF7	4	AMBRA1	7	affinity chromatography technology	Boldt K (2016)	1
PSMA7	1	PSMA2	1	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Vinayagam A (2011), Claverol S (2002), Apcher GS (2004), Apcher GS (2004), Bousquet-Dubouch MP (2009), Fricke B (2007), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	11
TRAF6	0	ULK1	8	affinity chromatography technology, affinity chromatography technology	Nazio F (2013), Nazio F (2013)	2
PIK3C3	1	HSP90AA1	7	affinity chromatography technology	Yang Y (2013)	1
MAPK6	1	PSMC1	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC3	0	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
TRAF6	0	DDB1	6	affinity chromatography technology	Antonioli M (2014)	1
TRAF6	0	PSMD12	1	affinity chromatography technology	Bouwmeester T (2004)	1
PSMA1	1	SUGT1	1	biochemical	Havugimana PC (2012)	1
MAPK6	1	PSMA2	1	affinity chromatography technology	Rodriguez J (2016)	1
CCT2	1	CCT3	1	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
GABARAP	0	ATG13	0	affinity chromatography technology, unspecified method, two hybrid	Alemu EA (2012), Alemu EA (2012), Fujita N (2013)	3
TRIM25	5	MYC	2	affinity chromatography technology	Choudhury NR (2017)	1
MAPK6	1	CCT4	2	affinity chromatography technology	Rodriguez J (2016)	1
CUL4B	8	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Guerrero-Santoro J (2008), Guerrero-Santoro J (2008), Angers S (2006), Jin J (2006), Wang H (2006), Higa LA (2006), Higa LA (2006), Kawajiri K (2009), Bennett EJ (2010), Havugimana PC (2012), Ji Q (2014), Wan C (2015), Hein MY (2015), Mo Y (2017), Mo Y (2017), Yang Y (2015), Yang Y (2015), Yang Y (2015), Higa LA (2006), Higa LA (2006), Ohtake F (2007), Ohtake F (2007), Ohtake F (2007)	23
PSMC6	0	PSMC3	0	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Kaneko T (2009), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Rolland T (2014), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	8
PSMA1	1	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	CCT8	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMC6	0	PSMD3	5	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
PRKN	1	PSMD6	0	affinity chromatography technology	Sarraf SA (2013)	1
AMBRA1	7	PSMB5	3	affinity chromatography technology	Antonioli M (2014)	1
HSPD1	0	HSPA8	4	biochemical	Havugimana PC (2012)	1
EGLN3	0	HSPD1	0	affinity chromatography technology	Rodriguez J (2016)	1
TRIM25	5	HSP90AA1	7	affinity chromatography technology	Choudhury NR (2017)	1
PSMC1	2	PSMD8	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015)	6
EGLN3	0	PSMA4	0	affinity chromatography technology	Rodriguez J (2016)	1
CUL4A	2	SUGT1	1	biochemical	Havugimana PC (2012)	1
PRKN	1	PSMB5	3	affinity chromatography technology	Sarraf SA (2013)	1
CUL7	4	CCT2	1	affinity chromatography technology, affinity chromatography technology	Hanson D (2014), Hanson D (2014)	2
RIPK4	0	TUBB3	3	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	PSMC4	6	affinity chromatography technology	Antonioli M (2014)	1
PSMC4	6	PSMC2	2	affinity chromatography technology, pull down, biochemical, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Hartmann-Petersen R (2001), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	8
PSMC1	2	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RIPK4	0	HSP90AA1	7	affinity chromatography technology	Rodriguez J (2016)	1
RNF2	1	PSMC4	6	two hybrid, affinity chromatography technology, pull down	Lee SJ (2005), Lee SJ (2005), Lee SJ (2005)	3
BCL2	0	MYC	2	affinity chromatography technology, imaging technique	Jin Z (2004), Jin Z (2004)	2
DDB1	6	UBC	7	affinity chromatography technology, affinity chromatography technology	Angers S (2006), Matsumoto M (2005)	2
RPTOR	4	DDB1	6	affinity chromatography technology, affinity chromatography technology	Hussain S (2013), Hussain S (2013)	2
RIPK4	0	FBXW11	2	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	HSPA8	4	affinity chromatography technology	Antonioli M (2014)	1
MAPK6	1	PSMC2	2	affinity chromatography technology	Rodriguez J (2016)	1
FBXW11	2	BAG5	0	affinity chromatography technology	Low TY (2014)	1
AMBRA1	7	PSMA7	1	affinity chromatography technology	Antonioli M (2014)	1
PSMA5	0	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	SUGT1	1	affinity chromatography technology, affinity chromatography technology	Antonioli M (2014), Antonioli M (2014)	2
PSMB5	3	PSMA1	1	two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Jayarapu K (2004), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
PSMA5	0	PSMD6	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
ASB8	0	ELOB	1	pull down, affinity chromatography technology	Liu Y (2003), Andresen CA (2014)	2
COPS5	0	HSPD1	0	affinity chromatography technology	Bennett EJ (2010)	1
TBC1D22A	3	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
DDB1	6	WSB2	1	affinity chromatography technology	He YJ (2006)	1
CUL7	4	ACTN1	5	affinity chromatography technology	Hanson D (2014)	1
PSMA5	0	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA2	1	PSMA5	0	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Claverol S (2002), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	7
CAMKMT	1	TUBB3	3	affinity chromatography technology	Cloutier P (2013)	1
UBC	7	STUB1	4	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study	Connell P (2001), Connell P (2001), Windheim M (2008), Zhang M (2005)	4
CUL7	4	DDB1	6	affinity chromatography technology	Hanson D (2014)	1
PRKN	1	PSMD10	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMD12	1	PSMD2	2	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
MYC	2	CCT8	0	affinity chromatography technology	Koch HB (2007)	1
DYNLL1	0	DYNC1I1	1	two hybrid, two hybrid, pull down, unspecified method, affinity chromatography technology	Diefenbach RJ (2002), Diefenbach RJ (2002), Lo KW (2001), Lo KW (2001), Di Bartolomeo S (2010)	5
PSMD6	0	PSMC2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
TRIM25	5	CCT3	1	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
COPS5	0	CCT8	0	affinity chromatography technology	Bennett EJ (2010)	1
PSMA6	1	GPS1	1	affinity chromatography technology	Huang X (2005)	1
BECN1	2	TRAF6	0	affinity chromatography technology, enzymatic study	Shi CS (2010), Shi CS (2010)	2
PSMD10	1	PSMD3	5	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
PSMA3	1	HSPD1	0	affinity chromatography technology	Fedorova OA (2011)	1
PSMA3	1	CCT4	2	affinity chromatography technology	Fedorova OA (2011)	1
DCAF7	4	DDA1	1	affinity chromatography technology	Boldt K (2016)	1
PSMA3	1	PSMB3	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
PSMB2	0	PSMD6	0	biochemical	Havugimana PC (2012)	1
MAPK6	1	PSMD8	1	affinity chromatography technology	Rodriguez J (2016)	1
LRRC42	2	SUGT1	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
PPP2CA	7	AMBRA1	7	affinity chromatography technology, two hybrid, affinity chromatography technology	Cianfanelli V (2015), Cianfanelli V (2015), Cianfanelli V (2015)	3
PSMA3	1	CCT3	1	affinity chromatography technology	Fedorova OA (2011)	1
TRIM25	5	PPP2CA	7	affinity chromatography technology	Choudhury NR (2017)	1
PSMA7	1	PSMA3	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, two hybrid, biochemical, biochemical	Vinayagam A (2011), Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Nandi D (1997), Fricke B (2007), Havugimana PC (2012), Wang J (2011), Kristensen AR (2012), Wan C (2015)	10
PSMB3	0	PSMD6	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
COPS5	0	GPS1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Sowa ME (2009), Stotland A (2012), Bennett EJ (2010), Oh W (2006), Chun Y (2013), Chun Y (2013), Chun Y (2013), Lingaraju GM (2014), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	11
EGLN3	0	RPTOR	4	affinity chromatography technology	Rodriguez J (2016)	1
DNAJB1	1	STIP1	1	biochemical	Wan C (2015)	1
FBXW11	2	ATG4B	1	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	PSMC3	0	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Jacobson AD (2014), Zhang X (2017)	3
MTOR	14	RPTOR	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jacinto E (2004), Jacinto E (2004), Sarbassov DD (2004), Sarbassov DD (2004), Sarbassov DD (2004), Schalm SS (2003), Hara K (2002), Ha SH (2006), Wang L (2006), Frias MA (2006), Frias MA (2006), Buerger C (2006), Jacinto E (2006), McMahon LP (2005), Oshiro N (2004), Kawai S (2003), Choi KM (2003), Hara K (2002), Hara K (2002), Kim DH (2002), Kim DH (2002), Schieke SM (2006), Ha SH (2006), Wang L (2006), Frias MA (2006), Buerger C (2006), Sarbassov DD (2006), Tzatsos A (2006), Sarbassov DD (2005), Yang Q (2006), Kaizuka T (2010), Pearce LR (2007), Oh WJ (2010), Oh WJ (2010), Agrawal P (2012), Kwak D (2012), Wu D (2012), Wu D (2012), Wu D (2012), Wu D (2012), Gwinn DM (2010), Sancak Y (2007), Sancak Y (2007), Yang Q (2006), Carriere A (2011), Jacinto E (2006), Rosner M (2010), Kim DH (2003), Kim DH (2003), Carriere A (2008), Murata H (2011), Koike-Kumagai M (2009), Koike-Kumagai M (2009), Hussain S (2013), Hussain S (2013), Peterson TR (2009), Peterson TR (2009), Su WC (2009), Hernandez-Negrete I (2007), Yan X (2012), Ramirez-Rangel I (2011), Ramirez-Rangel I (2011), Martin J (2008), Martin J (2008), Linares JF (2013), Coffman K (2014), Oshiro N (2014), Thedieck K (2007), Thedieck K (2007), Thedieck K (2007), Dan HC (2008), Dan HC (2008), Dan HC (2008), Hong F (2008), Hong F (2008), Choo AY (2008), Toschi A (2009), Loewith R (2002), Xu Y (2013), Sancak Y (2010), Sancak Y (2010), Vander Haar E (2007), Vander Haar E (2007), Kaadige MR (2015), Misra UK (2014), Misra UK (2014), Thedieck K (2007), Thomas JD (2014), Park D (2014), Alayev A (2016), Alayev A (2016)	91
PSMA4	0	PSMB3	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
PSMA2	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
HSP90AA1	7	ACTN1	5	affinity chromatography technology	Falsone SF (2005)	1
CUL4B	8	COPS8	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	4
PSMA6	1	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC3	0	PSMC5	4	pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ishizuka T (2001), Ishizuka T (2001), Um JW (2010), Lee SH (2012), Lee SH (2012), Divald A (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	10
PSMA1	1	PSMA5	0	biochemical, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Tipler CP (1997), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
HSP90AA1	7	MYC	2	affinity chromatography technology	Carystinos GD (2003)	1
EGLN3	0	DYNLL1	0	affinity chromatography technology	Rodriguez J (2016)	1
PRKN	1	BCL2	0	pull down, affinity chromatography technology	Chen D (2010), Chen D (2010)	2
HSPA5	0	BAG2	0	affinity chromatography technology	Hein MY (2015)	1
PRKN	1	PSMA1	1	pull down, affinity chromatography technology	Imai Y (2002), Sarraf SA (2013)	2
PSMC3	0	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Wan C (2015)	3
CAMKMT	1	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
MAPK6	1	PSMB3	0	affinity chromatography technology	Rodriguez J (2016)	1
UBC	7	PSMD13	1	pull down	Zhang X (2017)	1
RNF2	1	PSMA6	1	affinity chromatography technology	Cao Q (2014)	1
ULK1	8	BECN1	2	affinity chromatography technology, affinity chromatography technology, enzymatic study	Bodemann BO (2011), Chauhan S (2015), Chauhan S (2016)	3
ATG3	4	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
CUL7	4	CCT3	1	affinity chromatography technology	Hanson D (2014)	1
CUL4A	2	DDA1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Angers S (2006), Pick E (2007), Bennett EJ (2010), Olma MH (2009), Olma MH (2009), Olma MH (2009), Jin J (2006)	7
CAMKMT	1	CCT3	1	affinity chromatography technology	Cloutier P (2013)	1
PSMA7	1	PSMD8	1	biochemical	Havugimana PC (2012)	1
AMBRA1	7	STUB1	4	affinity chromatography technology	Antonioli M (2014)	1
STUB1	4	PSMA3	1	affinity chromatography technology, affinity chromatography technology	Arndt V (2005), Meacham GC (2001)	2
PSMA6	1	PSMC1	2	affinity chromatography technology, biochemical, biochemical	Huang X (2005), Havugimana PC (2012), Wan C (2015)	3
DCAF7	4	CCT4	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Miyata Y (2014), Huttlin EL (2017), Hauri S (2016)	3
PSMC1	2	PSMA2	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Barnes CJ (2005), Bousquet-Dubouch MP (2009), Wan C (2015), Sparks A (2014)	4
FBXW11	2	PSMC4	6	affinity chromatography technology	Low TY (2014)	1
PSMD2	2	PSMC2	2	pull down, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, biochemical, affinity chromatography technology	Gorbea C (2000), Um JW (2010), Lee SH (2012), Shim SM (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Sun S (2017)	8
PSMB3	0	PSMD2	2	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMC2	2	PSMD8	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Grune T (2011), Kim YC (2011), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	7
MAPK6	1	UBC	7	affinity chromatography technology	Rodriguez J (2016)	1
PSMA2	1	PSMD8	1	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
HSPA5	0	STUB1	4	affinity chromatography technology	Hein MY (2015)	1
PSMC4	6	PSMD8	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
MYC	2	CCT2	1	affinity chromatography technology	Koch HB (2007)	1
PSMC2	2	CCT2	1	biochemical	Wan C (2015)	1
PRKN	1	PSMD2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Um JW (2010), Sarraf SA (2013), Sarraf SA (2013)	3
PSMD6	0	PSMA2	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	4
MYC	2	CCT4	2	affinity chromatography technology	Koch HB (2007)	1
PSMA4	0	PSMB5	3	affinity chromatography technology, biochemical, biochemical, biochemical	Nandi D (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
RIPK4	0	CCT8	0	affinity chromatography technology	Rodriguez J (2016)	1
PRKN	1	BECN1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Choubey V (2014), Lonskaya I (2014), Lonskaya I (2014), Lonskaya I (2014)	4
PSMD6	0	PSMD3	5	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Wei SJ (2008), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
PSMD3	5	SUGT1	1	biochemical	Havugimana PC (2012)	1
TRIM25	5	CUL4A	2	affinity chromatography technology	Choudhury NR (2017)	1
MTOR	14	PRKN	1	affinity chromatography technology	Park D (2014)	1
STUB1	4	TRAF6	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Yang M (2011), Yang M (2011), Wang S (2013), Li S (2014), Li S (2014), Li S (2014), Li S (2014)	7
PSMC4	6	PSMD10	1	two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology, two hybrid, affinity chromatography technology, biochemical, two hybrid, two hybrid, biochemical, affinity chromatography technology	Rual JF (2005), Ewing RM (2007), Ewing RM (2007), Dawson S (2002), Dawson S (2002), Dawson S (2002), Dawson S (2002), Roelofs J (2009), Kaneko T (2009), Kaneko T (2009), Nagao T (2003), Nagao T (2003), Havugimana PC (2012), Wang J (2011), Rolland T (2014), Wan C (2015), Huttlin EL (2017)	17
CUL7	4	PSMA5	0	affinity chromatography technology	Hanson D (2014)	1
HSP90AA1	7	WSB2	1	affinity chromatography technology	Taipale M (2012)	1
AMBRA1	7	UBE2D3	1	pull down	Xia P (2013)	1
PSMA3	1	PSMA1	1	biochemical, pull down, affinity chromatography technology, biochemical, two hybrid, biochemical, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Gerards WL (1998), Fedorova OA (2011), Nandi D (1997), Havugimana PC (2012), Wang J (2011), Kristensen AR (2012), Rolland T (2014), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	10
AMBRA1	7	PSMA2	1	affinity chromatography technology	Antonioli M (2014)	1
UBE2D3	1	TRIM10	3	two hybrid, two hybrid	Napolitano LM (2011), Napolitano LM (2011)	2
AMBRA1	7	CCT2	1	affinity chromatography technology	Antonioli M (2014)	1
UBC	7	PSMA1	1	affinity chromatography technology	Matsumoto M (2005)	1
EGLN3	0	ELOB	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMD13	1	PSMC6	0	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
DDB1	6	DDA1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Angers S (2006), Behrends C (2010), Pick E (2007), Pick E (2007), Hrecka K (2007), Hrecka K (2007), Olma MH (2009), Olma MH (2009), Jin J (2006), Wan C (2015)	10
CISH	1	ELOB	1	affinity chromatography technology	Lavens D (2007)	1
PRKN	1	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Imai Y (2003), Taipale M (2012), Zanon A (2013)	3
AMBRA1	7	CCT8	0	affinity chromatography technology	Antonioli M (2014)	1
MAPK6	1	PSMD3	5	affinity chromatography technology	Rodriguez J (2016)	1
COPS5	0	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Angers S (2006), He YJ (2006), McCall CM (2008), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Gastaldello S (2012), Olma MH (2009), Olma MH (2009), Rao F (2014), Pick E (2012), Groisman R (2003), Groisman R (2003), Huttlin EL (2015), Cavadini S (2016), Scherer PC (2016), Scherer PC (2016), Huttlin EL (2017)	19
PSMA2	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
UBC	7	PSMD6	0	pull down	Zhang X (2017)	1
MTOR	14	DDB1	6	affinity chromatography technology, affinity chromatography technology	Hussain S (2013), Hussain S (2013)	2
CUL7	4	MAP1B	5	affinity chromatography technology	Hanson D (2014)	1
PSMC2	2	CCT8	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	PSMA6	1	affinity chromatography technology	Matsumoto M (2005)	1
RIPK4	0	AMBRA1	7	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	MAPK6	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang J (2011), Rodriguez J (2016), Rodriguez J (2016), Rodriguez J (2016), Rodriguez J (2016)	5
CCT4	2	CCT3	1	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
EGLN3	0	PSMD2	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC1	2	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
TRAF6	0	PSMC3	0	affinity chromatography technology	Bouwmeester T (2004)	1
UBC	7	PSMC5	4	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhu Q (2004), Zhang X (2017)	3
UBC	7	PSMA7	1	affinity chromatography technology	Matsumoto M (2005)	1
STIP1	1	BAG2	0	affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014)	2
PSMA3	1	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
MYC	2	PSMA1	1	affinity chromatography technology, affinity chromatography technology	Koch HB (2007), Hein MY (2015)	2
RPTOR	4	AMBRA1	7	affinity chromatography technology	Nazio F (2013)	1
PSMC5	4	PSMD8	1	affinity chromatography technology, biochemical, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
BECN1	2	UBC	7	pull down	Shi CS (2010)	1
MAPK6	1	DYNLL1	0	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	TUBA1A	13	affinity chromatography technology	Antonioli M (2014)	1
TUBB3	3	GABARAP	0	two hybrid	Stelzl U (2005)	1
PPP2R1A	8	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology	Aranda-Orgilles B (2008), Gano JJ (2010)	2
FBXW11	2	MAP1B	5	affinity chromatography technology, affinity chromatography technology	Coyaud E (2015), Low TY (2014)	2
PSMD13	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
DUSP4	1	AMBRA1	7	affinity chromatography technology	Li X (2016)	1
UBC	7	BAG2	0	affinity chromatography technology	Matsumoto M (2005)	1
PSMD12	1	PSMA3	1	biochemical	Wan C (2015)	1
PSMA1	1	CUL4B	8	biochemical	Kristensen AR (2012)	1
PSMA7	1	PSMD6	0	biochemical, biochemical, biochemical	Thompson HG (2004), Havugimana PC (2012), Wan C (2015)	3
CUL4B	8	UBE2D3	1	pull down	Li X (2011)	1
PSMD13	1	PSMA3	1	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
PRKN	1	PSMC3	0	affinity chromatography technology, affinity chromatography technology	Um JW (2010), Sarraf SA (2013)	2
PSMD10	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
PSMB2	0	PSMD8	1	biochemical	Havugimana PC (2012)	1
HSP90AA1	7	SUGT1	1	pull down, pull down, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique	Zhang M (2008), Lee YT (2004), Lee YT (2004), Mayor A (2007), Spiechowicz M (2007), Spiechowicz M (2007), Gano JJ (2010), Niikura Y (2006), Niikura Y (2006), Niikura Y (2006), Liu XS (2012), Goral A (2016), Goral A (2016)	13
BECN1	2	PIK3C3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Platta HW (2012), Platta HW (2012), Platta HW (2012), Wang J (2008), Xia P (2013), Luciani A (2010), Luciani A (2010), Matsunaga K (2009), Ma B (2014), Xia P (2014), Itakura E (2008), Itakura E (2008), Sun Q (2008), Sun Q (2008), Sun Q (2008), Pattingre S (2005), Luo S (2010), Ramachandran N (2013), Fogel AI (2013), Xu D (2015), Hein MY (2015), Ma B (2015), Zeng X (2006), Verma N (2017), Wei Y (2015), Stjepanovic G (2017), Liu X (2017), Li X (2017)	30
CUL4A	2	WSB2	1	affinity chromatography technology	He YJ (2006)	1
FBXW11	2	UBE2D3	1	pull down	Wu K (2010)	1
AMBRA1	7	PSMA1	1	affinity chromatography technology	Antonioli M (2014)	1
HSP90AA1	7	TUBA1A	13	affinity chromatography technology, affinity chromatography technology	Hu Y (2003), Skarra DV (2011)	2
COPS5	0	HSPA5	0	affinity chromatography technology	Bennett EJ (2010)	1
CUL4A	2	COPS8	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Angers S (2006), He YJ (2006), McCall CM (2008), Bennett EJ (2010), Olma MH (2009), Huttlin EL (2017), Boldt K (2016)	7
UBC	7	CISH	1	affinity chromatography technology, affinity chromatography technology	Jensik PJ (2015), Jensik PJ (2015)	2
PPP2R1A	8	DYNLL1	0	affinity chromatography technology	Hein MY (2015)	1
COPS5	0	CCT2	1	affinity chromatography technology	Bennett EJ (2010)	1
COPS5	0	PPP2R1A	8	genetic interference	Horlbeck MA (2018)	1
PSMC3	0	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	CCT3	1	affinity chromatography technology, affinity chromatography technology	Matsumoto M (2005), Bish RA (2007)	2
PSMD12	1	PSMC6	0	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Suo J (2010), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
PSMD3	5	PSMD8	1	affinity chromatography technology, biochemical, biochemical, biochemical	Wei SJ (2008), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
AMBRA1	7	PSMC5	4	affinity chromatography technology	Antonioli M (2014)	1
PRKN	1	PSMD3	5	affinity chromatography technology	Sarraf SA (2013)	1
FBXW11	2	AMBRA1	7	affinity chromatography technology	Low TY (2014)	1
SOCS3	0	ELOB	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Xiao Z (2007), Niwa Y (2005), Kamura T (2004)	3
PSMA1	1	PSMA7	1	two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Jayarapu K (2004), Tipler CP (1997), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	11
CCT3	1	CCT8	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMA7	1	PSMB5	3	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
EGLN3	0	PSMA5	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMB5	3	PSMB3	0	two hybrid, two hybrid, two hybrid, biochemical, biochemical, biochemical, affinity chromatography technology	Jayarapu K (2004), Fricke B (2007), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	7
EGLN3	0	PSMD6	0	affinity chromatography technology	Rodriguez J (2016)	1
MYC	2	PSMB3	0	affinity chromatography technology	Koch HB (2007)	1
PSMA6	1	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	HSPD1	0	two hybrid	Bandyopadhyay S (2010)	1
CCT2	1	CCT4	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	PIK3C3	1	affinity chromatography technology	Di Bartolomeo S (2010)	1
CUL4A	2	PSMC6	0	affinity chromatography technology	Bennett EJ (2010)	1
MAPK6	1	PSMD13	1	affinity chromatography technology	Rodriguez J (2016)	1
MAPK6	1	PSMC4	6	affinity chromatography technology	Rodriguez J (2016)	1
HSPD1	0	HSPA5	0	biochemical	Havugimana PC (2012)	1
TRIM25	5	STUB1	4	affinity chromatography technology	Choudhury NR (2017)	1
PSMA4	0	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC6	0	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	PSMD10	1	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
FBXW11	2	CCT8	0	affinity chromatography technology	Low TY (2014)	1
CISH	1	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CUL4A	2	HSPA5	0	affinity chromatography technology	Bennett EJ (2010)	1
PPP2R1A	8	PSMD6	0	genetic interference	Horlbeck MA (2018)	1
PSMA5	0	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	UBE2D3	1	affinity chromatography technology, two hybrid, x-ray crystallography, pull down, pull down, pull down	Matsumoto M (2005), Vinayagam A (2011), Pruneda JN (2014), Li Y (2014), Poyurovsky MV (2007), Zhang X (2017)	6
EGLN3	0	AMBRA1	7	affinity chromatography technology	Rodriguez J (2016)	1
BAG5	0	STUB1	4	pull down, affinity chromatography technology	Kalia LV (2011), Kalia LV (2011)	2
TRIM25	5	CCT4	2	affinity chromatography technology	Choudhury NR (2017)	1
TRIM25	5	PSMA3	1	affinity chromatography technology	Choudhury NR (2017)	1
COPS8	2	GPS1	1	biochemical, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Wei N (1998), Stotland A (2012), Sharon M (2009), Sun Y (2002), Kristensen AR (2012), Lingaraju GM (2014), Lyapina S (2001), Wan C (2015), Huttlin EL (2017), Boldt K (2016)	10
TRIM25	5	ACTN1	5	affinity chromatography technology	Choudhury NR (2017)	1
PSMD6	0	PSMC4	6	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
PRKN	1	STUB1	4	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2002), Imai Y (2003), Zhu X (2017)	5
PSMA5	0	PSMA7	1	affinity chromatography technology, biochemical, biochemical, biochemical	Apcher GS (2004), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMA5	0	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
PSMA3	1	PSMC4	6	affinity chromatography technology, biochemical, biochemical	Fedorova OA (2011), Havugimana PC (2012), Wan C (2015)	3
TRIM25	5	DCAF7	4	affinity chromatography technology	Choudhury NR (2017)	1
PSMA3	1	HSPA5	0	affinity chromatography technology	Fedorova OA (2011)	1
PSMA6	1	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
COPS5	0	AMBRA1	7	affinity chromatography technology	Bennett EJ (2010)	1
UBE2D3	1	TUBA1A	13	two hybrid	Vinayagam A (2011)	1
PSMC2	2	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMD13	1	PSMA6	1	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
UBL4A	0	HSPA5	0	affinity chromatography technology, affinity chromatography technology	Xu Y (2012), Hein MY (2015)	2
PSMC4	6	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Wan C (2015)	3
TRIM25	5	HSPA8	4	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
PSMC6	0	PSMD2	2	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
AMBRA1	7	PSMC1	2	affinity chromatography technology	Antonioli M (2014)	1
HSP90AA1	7	HSPA5	0	affinity chromatography technology	Gano JJ (2010)	1
CUL4A	2	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
PSMC4	6	BAG2	0	affinity chromatography technology	Ewing RM (2007)	1
EGLN3	0	HSPA8	4	affinity chromatography technology	Rodriguez J (2016)	1
PRKN	1	PSMD12	1	affinity chromatography technology	Sarraf SA (2013)	1
AMBRA1	7	PRKN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Van Humbeeck C (2011), Van Humbeeck C (2011), Van Humbeeck C (2011), Choubey V (2014)	4
PSMC3	0	PSMA1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	PSMC6	0	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
PSMC4	6	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CUL4B	8	STUB1	4	biochemical	Kristensen AR (2012)	1
PSMA2	1	PSMB3	0	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Claverol S (2002), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	8
COPS5	0	PSMD12	1	genetic interference	Horlbeck MA (2018)	1
PSMC4	6	PSMA1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	PPP2R1A	8	two hybrid	Vinayagam A (2011)	1
HSPA8	4	UBC	7	two hybrid	Stelzl U (2005)	1
PSMD6	0	PSMC1	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, genetic interference	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Wan C (2015), Hein MY (2015), Horlbeck MA (2018)	6
BCL2	0	DYNLL1	0	affinity chromatography technology	Puthalakath H (1999)	1
UBC	7	UBL4A	0	affinity chromatography technology	Matsumoto M (2005)	1
EGLN3	0	PSMC3	0	affinity chromatography technology	Rodriguez J (2016)	1
MYC	2	PSMD3	5	affinity chromatography technology	Koch HB (2007)	1
PRKN	1	TUBA1A	13	affinity chromatography technology	Hampe C (2006)	1
BECN1	2	DDB1	6	affinity chromatography technology	Antonioli M (2014)	1
MYC	2	STUB1	4	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Paul I (2012), Paul I (2012), Paul I (2012), Huang H (2017)	4
AMBRA1	7	PSMD13	1	affinity chromatography technology	Antonioli M (2014)	1
RNF2	1	TRIM25	5	affinity chromatography technology	Cao Q (2014)	1
PSMC2	2	UBC	7	pull down, pull down	Jacobson AD (2014), Zhang X (2017)	2
ASB8	0	TUBB3	3	affinity chromatography technology	Andresen CA (2014)	1
MYC	2	PSMC2	2	affinity chromatography technology, genetic interference	Koch HB (2007), Toyoshima M (2012)	2
PSMA4	0	PSMA3	1	affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Apcher GS (2004), Apcher GS (2004), Jayarapu K (2004), Jayarapu K (2004), Nandi D (1997), Nandi D (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	9
MYC	2	PSMA4	0	affinity chromatography technology	Koch HB (2007)	1
DYNC1I1	1	DYNLL2	0	two hybrid	Rual JF (2005)	1
MAPK6	1	PSMB2	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMC5	4	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBE2D3	1	TRIM25	5	two hybrid, pull down, pull down, affinity chromatography technology	Markson G (2009), Ronchi VP (2012), Choudhury NR (2017), Choudhury NR (2017)	4
PRKN	1	BAG5	0	affinity chromatography technology, pull down	Kalia SK (2004), Kalia SK (2004)	2
UBC	7	PSMA3	1	affinity chromatography technology	Matsumoto M (2005)	1
PSMC2	2	PSMC5	4	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Tipler CP (1997), Kim YC (2011), Lee SH (2012), Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	7
MYC	2	HPS1	1	genetic interference	Toyoshima M (2012)	1
PSMA6	1	CCT8	0	biochemical	Havugimana PC (2012)	1
PSMB2	0	PSMB5	3	two hybrid, biochemical, biochemical, biochemical, affinity chromatography technology	Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
TRIM25	5	MTOR	14	affinity chromatography technology	Choudhury NR (2017)	1
PSMD10	1	PSMC3	0	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
EGLN3	0	PSMD3	5	affinity chromatography technology	Rodriguez J (2016)	1
DCAF7	4	PPP2R1A	8	genetic interference	Horlbeck MA (2018)	1
ACTN1	5	PSMA1	1	two hybrid	Wang J (2011)	1
PRKN	1	PSMC5	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Tsai YC (2003), Tsai YC (2003), Um JW (2010), Sarraf SA (2013)	4
AMBRA1	7	PSMA5	0	affinity chromatography technology	Antonioli M (2014)	1
EGLN3	0	DNAJB1	1	affinity chromatography technology	Rodriguez J (2016)	1
BECN1	2	AMBRA1	7	affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, pull down, affinity chromatography technology, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Strappazzon F (2011), Xia P (2013), Xia P (2013), Xia P (2013), Luciani A (2010), Luciani A (2010), Di Bartolomeo S (2010), Gu W (2014), Gu W (2014), Antonioli M (2014)	11
UBE2D3	1	F12	0	pull down	Koh MY (2008)	1
MAPK6	1	PSMC3	0	affinity chromatography technology	Rodriguez J (2016)	1
WSB2	1	AMBRA1	7	affinity chromatography technology	Huttlin EL (2017)	1
STUB1	4	HSP90AA1	7	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, enzymatic study, biochemical, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, unspecified method, pull down	Zhang L (2007), Zhang M (2005), Tateishi Y (2004), Tateishi Y (2004), Connell P (2001), Ko HS (2009), Kumar P (2007), Kumar P (2007), Wang L (2011), Stankiewicz M (2010), Graf C (2010), Kundrat L (2010), Kundrat L (2010), Kundrat L (2010), Kundrat L (2010), Morishima Y (2008), Zhou P (2003), Zhang M (2008), Grelle G (2006), Kim SA (2005), Arndt V (2005), Muller P (2012), Burch L (2004), Burch L (2004), Jang KW (2011), Schuelke JP (2010), Wang Q (2012), Shimamoto S (2013), Shimamoto S (2013), Shimamoto S (2013), Gano JJ (2010), Skarra DV (2011), Yang SW (2013), Grelle G (2006), Grelle G (2006), Narayan V (2015)	36
PSMA4	0	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
TRIM25	5	PSMA5	0	affinity chromatography technology	Choudhury NR (2017)	1
COPS5	0	PSMA7	1	affinity chromatography technology	Bennett EJ (2010)	1
PSMA7	1	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC4	6	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CUL7	4	UBC	7	affinity chromatography technology	Hanson D (2014)	1
PSMD13	1	PSMA7	1	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
TRIM25	5	WDR1	3	affinity chromatography technology	Choudhury NR (2017)	1
PSMA4	0	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
DYNC1I1	1	TUBB3	3	affinity chromatography technology	Yamada M (2008)	1
PSMC3	0	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CUL7	4	CCT4	2	affinity chromatography technology	Hanson D (2014)	1
RIPK4	0	CCT3	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMD6	0	PSMD8	1	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMA1	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical	Isakov E (2011), Havugimana PC (2012), Wan C (2015)	3
CUL4A	2	DDB1	6	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Guerrero-Santoro J (2008), Guerrero-Santoro J (2008), Angers S (2006), Angers S (2006), Jin J (2006), Wang H (2006), Kapetanaki MG (2006), Matsuda N (2005), Hu J (2004), Hu J (2004), Hu J (2004), Ahn J (2010), Maddika S (2009), Fischer ES (2011), Tan L (2007), He YJ (2006), He YJ (2006), He YJ (2006), McCall CM (2008), McCall CM (2008), Shiyanov P (1999), Bennett EJ (2010), Gastaldello S (2012), Kanei-Ishii C (2012), Hodgson AJ (2012), Kulaksiz G (2005), Wu Z (2012), Wu Z (2012), Olma MH (2009), Olma MH (2009), Havugimana PC (2012), Rao F (2014), Wan C (2015), Liu Y (2015), Zha Z (2015), Mouysset J (2015), Gao J (2015), Yang Y (2016), Yang Y (2016), Scherer PC (2016), Eichner R (2016), Mo Y (2017), Mo Y (2017), Peng Z (2016), Higa LA (2006), Ohtake F (2007)	46
DNAJB1	1	HSPA8	4	pull down, pull down	Meacham GC (1999), Tsukahara F (2000)	2
HSPA5	0	PSMC5	4	affinity chromatography technology	Hein MY (2015)	1
MAPK6	1	PSMC5	4	affinity chromatography technology	Rodriguez J (2016)	1
PSMD6	0	PSMC3	0	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
PPP2R1A	8	HSPA8	4	affinity chromatography technology	Aranda-Orgilles B (2008)	1
PRKN	1	HSPD1	0	affinity chromatography technology	Zanon A (2013)	1
HSP90AA1	7	PSMB5	3	affinity chromatography technology	Falsone SF (2005)	1
PSMA6	1	PSMB5	3	two hybrid, biochemical, biochemical, biochemical	Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMA2	1	PSMC5	4	affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Wan C (2015)	2
AMBRA1	7	CCT3	1	affinity chromatography technology	Antonioli M (2014)	1
MYC	2	PSMC6	0	affinity chromatography technology	Koch HB (2007)	1
UBC	7	ATG13	0	affinity chromatography technology	Matsumoto M (2005)	1
TRIM25	5	RPTOR	4	affinity chromatography technology	Choudhury NR (2017)	1
PSMA2	1	PSMD3	5	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PPP2CA	7	BCL2	0	enzymatic study, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study	Deng X (1998), Deng X (1998), Deng X (1998), Tamura Y (2004), Tamura Y (2004)	5
CUL7	4	PSMD6	0	affinity chromatography technology	Hanson D (2014)	1
PSMB3	0	PSMD12	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PRKN	1	PSMC2	2	affinity chromatography technology, pull down	Sarraf SA (2013), Aguileta MA (2015)	2
EGLN3	0	PPP2CA	7	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	CUL7	4	affinity chromatography technology	Antonioli M (2014)	1
PSMA2	1	PSMD12	1	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PSMC5	4	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMD3	5	PSMD12	1	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Wei SJ (2008), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
CCT2	1	CCT8	0	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
MYC	2	AMBRA1	7	affinity chromatography technology	Cianfanelli V (2015)	1
CAMKMT	1	HSPA8	4	affinity chromatography technology	Cloutier P (2013)	1
TRIM25	5	MAPK6	1	affinity chromatography technology	Choudhury NR (2017)	1
PSMA5	0	PSMB5	3	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
PSMC2	2	PSMC6	0	biochemical, biochemical, biochemical, biochemical	Tipler CP (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
CUL7	4	PPP2R1A	8	affinity chromatography technology	Hanson D (2014)	1
UBC	7	VPS50	3	pull down	Zhang X (2017)	1
PSMC2	2	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMC6	0	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
ATG3	4	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
AMBRA1	7	PSMD12	1	affinity chromatography technology	Antonioli M (2014)	1
PSMC3	0	RNF2	1	affinity chromatography technology	Huttlin EL (2015)	1
MYC	2	PSMC3	0	affinity chromatography technology, two hybrid	Koch HB (2007), Wang J (2011)	2
DDB1	6	GPS1	1	affinity chromatography technology, pull down, fluorescent resonance energy transfe	Jin J (2006), Emberley ED (2012), Cavadini S (2016)	3
UBC	7	PSMD2	2	pull down	Zhang X (2017)	1
RIPK4	0	CCT2	1	affinity chromatography technology	Rodriguez J (2016)	1
STUB1	4	HSPA8	4	pull down, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, enzymatic study, x-ray crystallography, pull down, pull down, pull down, pull down, affinity chromatography technology, enzymatic study, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, unspecified method, affinity chromatography technology, x-ray crystallography, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, enzymatic study	Ballinger CA (1999), Ballinger CA (1999), Ballinger CA (1999), Tateishi Y (2004), Tateishi Y (2004), Jiang J (2001), Wang L (2011), Wang L (2011), Wang L (2011), Stankiewicz M (2010), Yang M (2011), Yang M (2011), Urushitani M (2004), Grelle G (2006), Kim SA (2005), Arndt V (2005), Alberti S (2004), Meacham GC (2001), Smith MC (2013), Smith MC (2013), Matsumura Y (2013), Spooner RA (2008), Taipale M (2014), Taipale M (2014), Heimdal K (2014), Grelle G (2006), Grelle G (2006), Kamynina E (2007), Zhang H (2015), Zhang H (2015), Zhang H (2015), Li P (2015), Guo Y (2016), Zhang H (2017), Pakdaman Y (2017)	35
PSMA3	1	STIP1	1	affinity chromatography technology	Fedorova OA (2011)	1
PSMA6	1	PSMD6	0	affinity chromatography technology, biochemical, biochemical	Huang X (2005), Havugimana PC (2012), Wan C (2015)	3
PSMA3	1	PSMD6	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HSP90AA1	7	FBXW11	2	affinity chromatography technology	Taipale M (2012)	1
PSMB3	0	PSMD13	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMA3	1	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMD13	1	PSMA1	1	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
MAPK6	1	TUBA1A	13	two hybrid	Vinayagam A (2011)	1
RNF2	1	BECN1	2	affinity chromatography technology	Xia P (2014)	1
PSMD13	1	PSMC5	4	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
PSMC2	2	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
IRGM	1	AMBRA1	7	affinity chromatography technology	Chauhan S (2015)	1
CUL7	4	HSPD1	0	affinity chromatography technology	Hanson D (2014)	1
PSMD13	1	PSMD3	5	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMA2	1	PSMC4	6	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PSMA2	1	PSMC3	0	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PSMA4	0	PSMA6	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Bloom J (2006), Apcher GS (2004), Apcher GS (2004), Nandi D (1997), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	8
UBL4A	0	HSP90AA1	7	affinity chromatography technology	Xu Y (2012)	1
TRAF6	0	PSMD3	5	affinity chromatography technology	Bouwmeester T (2004)	1
UBC	7	PSMD12	1	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
CUL4A	2	PPP2R1A	8	affinity chromatography technology	Bennett EJ (2010)	1
PSMC5	4	PSMA4	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBC	7	PSMA5	0	affinity chromatography technology	Matsumoto M (2005)	1
MYC	2	CUL4A	2	affinity chromatography technology	Choi SH (2010)	1
PSMB5	3	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC5	4	PSMD12	1	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
COPS5	0	FBXW11	2	affinity chromatography technology	Bennett EJ (2010)	1
CUL7	4	BAG2	0	affinity chromatography technology	Hanson D (2014)	1
CCT2	1	HSP90AA1	7	affinity chromatography technology	Lin YF (2012)	1
RIPK4	0	UBL4A	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMA4	0	PSMD6	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC5	4	PSMC6	0	pull down, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Hartmann-Petersen R (2001), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	6
MAPK6	1	PSMD2	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC3	0	PSMD3	5	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
CUL4A	2	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dias DC (2002), Bennett EJ (2010), Taipale M (2012)	3
DDB1	6	COPS8	2	affinity chromatography technology, pull down	Angers S (2006), Emberley ED (2012)	2
ULK1	8	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
STUB1	4	DNAJB1	1	pull down, affinity chromatography technology, two hybrid	Ballinger CA (1999), Ballinger CA (1999), Ballinger CA (1999)	3
PPP2CA	7	CCT8	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Goudreault M (2009), Glatter T (2009), Hein MY (2015)	3
DCAF7	4	CCT3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Miyata Y (2014), Huttlin EL (2017), Hauri S (2016)	3
PSMB5	3	PSMA2	1	two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Jayarapu K (2004), Zhang N (2010), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Kristensen AR (2012), Wan C (2015), Sparks A (2014)	8
PSMA6	1	CCT3	1	biochemical	Havugimana PC (2012)	1
RIPK4	0	HSPA8	4	affinity chromatography technology	Rodriguez J (2016)	1
ATG13	0	AMBRA1	7	affinity chromatography technology	Nazio F (2013)	1
PSMD6	0	PSMD13	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
MYC	2	PSMB5	3	affinity chromatography technology	Koch HB (2007)	1
PPP2CA	7	CCT4	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Goudreault M (2009), Glatter T (2009), Hein MY (2015)	3
HSP90AA1	7	BECN1	2	affinity chromatography technology	Xu C (2011)	1
TRIM25	5	EGLN3	0	affinity chromatography technology	Choudhury NR (2017)	1
DCAF7	4	CCT2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Miyata Y (2014), Miyata Y (2014), Huttlin EL (2017), Hauri S (2016)	4
EGLN3	0	PPP2R1A	8	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	PSMA4	0	affinity chromatography technology	Antonioli M (2014)	1
CUL7	4	CCT8	0	affinity chromatography technology	Hanson D (2014)	1
PSMB2	0	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PRKN	1	HSPA5	0	affinity chromatography technology	Zanon A (2013)	1
USP50	4	TUBA1A	13	affinity chromatography technology	Sowa ME (2009)	1
PSMD13	1	PSMC1	2	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015)	5
PSMA1	1	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CUL4A	2	UBC	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Angers S (2006), Bennett EJ (2010), Olma MH (2009), Wu K (2016)	4
AMBRA1	7	HSPA5	0	affinity chromatography technology	Antonioli M (2014)	1
AMBRA1	7	COPS8	2	affinity chromatography technology	Antonioli M (2014)	1
EGLN3	0	PSMD13	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMA1	1	PSMC5	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Tanahashi N (2000), Tanahashi N (2000), Park Y (2005), Havugimana PC (2012), Wan C (2015)	5
AMBRA1	7	TUBB3	3	affinity chromatography technology	Antonioli M (2014)	1
PRKN	1	PSMD13	1	affinity chromatography technology	Sarraf SA (2013)	1
COPS8	2	COPS5	0	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wei N (1998), Sowa ME (2009), Fang L (2008), Bennett EJ (2010), Olma MH (2009), Asare Y (2013), Huttlin EL (2015), Huttlin EL (2017), Boldt K (2016)	9
TRAF6	0	RPTOR	4	affinity chromatography technology	Linares JF (2013)	1
DDB1	6	COPS5	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study	Angers S (2006), Jin J (2006), Emberley ED (2012), Bennett EJ (2010), Olma MH (2009), He F (2013)	6
MYC	2	PSMD2	2	affinity chromatography technology, affinity chromatography technology	Koch HB (2007), Agrawal P (2010)	2
AMBRA1	7	PSMA3	1	affinity chromatography technology	Antonioli M (2014)	1
AMBRA1	7	UBC	7	affinity chromatography technology	Antonioli M (2014)	1
PSMC2	2	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Wan C (2015)	3
STUB1	4	UBE2D3	1	pull down, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down	Murata S (2001), Soss SE (2011), Page RC (2012), Parsons JL (2009), Stankiewicz M (2010), Gao XC (2011), Kundrat L (2010), Kundrat L (2010), Tsukahara F (2010), Todi SV (2010), Smith MC (2013), Ronnebaum SM (2013), Seki T (2013), Heimdal K (2014), Todi SV (2009), Yuan L (2015), Kim JH (2017), Blessing NA (2017), Pakdaman Y (2017)	19
NES	2	HSP90AA1	7	affinity chromatography technology	Hein MY (2015)	1
MAPK6	1	CCT3	1	two hybrid, affinity chromatography technology	Bandyopadhyay S (2010), Rodriguez J (2016)	2
TRIM25	5	STIP1	1	affinity chromatography technology	Choudhury NR (2017)	1
PSMC3	0	PSMA6	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA6	1	COPS5	0	affinity chromatography technology	Huang X (2005)	1
MAPK6	1	PSMD6	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMD10	1	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA7	1	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RIPK4	0	HSPD1	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMC3	0	PSMD8	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Wan C (2015)	4
CUL4B	8	UBC	7	affinity chromatography technology, pull down	Bennett EJ (2010), Nathan JA (2013)	2
PSMC1	2	PSMA3	1	affinity chromatography technology, biochemical, biochemical	Barnes CJ (2005), Havugimana PC (2012), Wan C (2015)	3
STUB1	4	HSPD1	0	affinity chromatography technology, affinity chromatography technology	Kumar P (2007), Kumar P (2007)	2
PSMA1	1	TRIM10	3	two hybrid	Rolland T (2014)	1
PSMA2	1	CCT3	1	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
COPS5	0	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
PRKN	1	PSMC6	0	affinity chromatography technology	Sarraf SA (2013)	1
CAMKMT	1	HSP90AA1	7	affinity chromatography technology	Cloutier P (2013)	1
UBC	7	HSPD1	0	affinity chromatography technology, affinity chromatography technology	Matsumoto M (2005), Bish RA (2007)	2
PSMD12	1	PSMD8	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
AMBRA1	7	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Jin J (2006), Antonioli M (2014), Antonioli M (2014), Antonioli M (2014)	4
MTOR	14	AMBRA1	7	enzymatic study	Nazio F (2013)	1
PSMC5	4	PSMC1	2	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Hartmann-Petersen R (2001), Kim YC (2011), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
PSMA1	1	PSMB2	0	two hybrid, two hybrid, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Jayarapu K (2004), Jayarapu K (2007), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	8
PRKN	1	PSMA2	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMC4	6	PSMD3	5	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
PSMA3	1	PSMA5	0	affinity chromatography technology, biochemical, biochemical, biochemical	Nandi D (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
AMBRA1	7	ATG3	4	affinity chromatography technology	Behrends C (2010)	1
UBC	7	CCT4	2	affinity chromatography technology	Bish RA (2007)	1
ULK1	8	ATG13	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2011), Nazio F (2013), Nazio F (2013), Hosokawa N (2009), Li J (2015), Dunlop EA (2014), Rui YN (2015)	7
CCT2	1	PSMC6	0	pull down	Lin YF (2012)	1
PSMC3	0	PSMD2	2	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
TRIM10	3	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
PSMA3	1	HSPA8	4	affinity chromatography technology	Fedorova OA (2011)	1
UBC	7	PSMB5	3	affinity chromatography technology	Matsumoto M (2005)	1
AMBRA1	7	HSPD1	0	affinity chromatography technology	Antonioli M (2014)	1
PRKN	1	PSMA4	0	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hampe C (2006), Daechsel JC (2005), Daechsel JC (2005), Daechsel JC (2005), Sarraf SA (2013)	5
PSMA1	1	PSMA4	0	affinity chromatography technology, two hybrid, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Apcher GS (2004), Jayarapu K (2004), Nandi D (1997), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	8
UBC	7	PSMD3	5	pull down	Zhang X (2017)	1
EGLN3	0	STUB1	4	affinity chromatography technology	Rodriguez J (2016)	1
ATG3	4	GABARAP	0	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Sou YS (2006), Sou YS (2006), Huttlin EL (2017)	5
MYC	2	CCT3	1	affinity chromatography technology	Koch HB (2007)	1
MYC	2	PSMA2	1	affinity chromatography technology	Koch HB (2007)	1
PSMC5	4	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
MAPK6	1	PSMA7	1	affinity chromatography technology	Varjosalo M (2013)	1
RNF2	1	AMBRA1	7	two hybrid, affinity chromatography technology, pull down, enzymatic study	Xia P (2014), Xia P (2014), Xia P (2014), Xia P (2014)	4
UBE2D3	1	RNF2	1	two hybrid, pull down, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down	Markson G (2009), Bentley ML (2011), Li Z (2006), Pan MR (2011), Zhang Y (2014), Xia P (2014), Gearhart MD (2006), McGinty RK (2014), Cao Q (2014), Gao Z (2014)	10
PSMA5	0	PSMB3	0	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
TRAF6	0	MTOR	14	affinity chromatography technology, enzymatic study	Linares JF (2013), Linares JF (2013)	2
AMBRA1	7	PSMB2	0	affinity chromatography technology	Antonioli M (2014)	1
PSMA1	1	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RPTOR	4	CUL4A	2	affinity chromatography technology	Hussain S (2013)	1
TRIM25	5	TUBB3	3	affinity chromatography technology	Choudhury NR (2017)	1
PSMA5	0	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
COPS5	0	CCT4	2	affinity chromatography technology	Bennett EJ (2010)	1
PSMA3	1	PSMC3	0	affinity chromatography technology, biochemical, biochemical, biochemical	Fedorova OA (2011), Bose S (2001), Havugimana PC (2012), Wan C (2015)	4
HSPA8	4	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down	Polanowska-Grabowska R (1997), Giommarelli C (2010), Gano JJ (2010), Skarra DV (2011), Wan C (2015), Sun L (2012)	6
PRKN	1	RPTOR	4	affinity chromatography technology	Park D (2014)	1
TRIM25	5	ULK1	8	affinity chromatography technology	Choudhury NR (2017)	1
PSMA2	1	HSPA8	4	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
STUB1	4	BAG2	0	pull down, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dai Q (2005), Dai Q (2005), Arndt V (2005), Arndt V (2005), Arndt V (2005), Taipale M (2014), Taipale M (2014), Taipale M (2014), Taipale M (2014)	9
MAPK6	1	AMBRA1	7	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	STIP1	1	affinity chromatography technology	Antonioli M (2014)	1
TRIM25	5	HSPA5	0	affinity chromatography technology	Choudhury NR (2017)	1
EGLN3	0	PSMC6	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMB2	0	PSMD3	5	biochemical	Havugimana PC (2012)	1
SOCS3	0	TRAF6	0	affinity chromatography technology, affinity chromatography technology	Frobose H (2006), Zhou X (2015)	2
AMBRA1	7	DDA1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Olma MH (2009), Antonioli M (2014)	4
AMBRA1	7	BAG5	0	affinity chromatography technology	Antonioli M (2014)	1
PSMA3	1	CCT2	1	affinity chromatography technology	Fedorova OA (2011)	1
UBC	7	PPP2R1A	8	affinity chromatography technology	Matsumoto M (2005)	1
RIPK4	0	PSMB2	0	affinity chromatography technology	Rodriguez J (2016)	1
IRGM	1	ULK1	8	affinity chromatography technology	Chauhan S (2015)	1
PSMC2	2	PSMD12	1	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
RNF2	1	UBC	7	enzymatic study	Woodsmith J (2012)	1
SUGT1	1	HSPA8	4	affinity chromatography technology, affinity chromatography technology	Niikura Y (2006), Niikura Y (2006)	2
PSMB2	0	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC3	0	PSMD12	1	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
USP50	4	HSP90AA1	7	two hybrid	Aressy B (2010)	1
PSMB5	3	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA6	1	CCT4	2	biochemical	Havugimana PC (2012)	1
ULK1	8	GABARAP	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology	Ewing RM (2007), Okazaki N (2000), Okazaki N (2000), Alemu EA (2012), Alemu EA (2012), Dunlop EA (2014)	6
UBL4A	0	HSPD1	0	affinity chromatography technology	Xu Y (2012)	1
RIPK4	0	STUB1	4	affinity chromatography technology	Rodriguez J (2016)	1
PSMD6	0	PSMC6	0	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Wan C (2015)	4
RIPK4	0	BAG5	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMA6	1	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
PRKN	1	PSMA6	1	affinity chromatography technology	Sarraf SA (2013)	1
AMBRA1	7	PSMD6	0	affinity chromatography technology	Antonioli M (2014)	1
DYNC1I1	1	BECN1	2	affinity chromatography technology	Di Bartolomeo S (2010)	1
COPS5	0	HSP90AA1	7	affinity chromatography technology	Bennett EJ (2010)	1
PSMC1	2	PSMD2	2	two hybrid, pull down, biochemical, two hybrid, biochemical, two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Gorbea C (2000), Havugimana PC (2012), Venkatesan K (2009), Kristensen AR (2012), Rolland T (2014), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
RIPK4	0	STIP1	1	affinity chromatography technology	Rodriguez J (2016)	1
BECN1	2	DYNLL1	0	affinity chromatography technology	Di Bartolomeo S (2010)	1
CUL4B	8	HSP90AA1	7	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Taipale M (2012)	2
PSMC4	6	PSMD12	1	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
TRAF6	0	PSMB5	3	affinity chromatography technology	Bouwmeester T (2004)	1
AMBRA1	7	ELOB	1	affinity chromatography technology, affinity chromatography technology	Antonioli M (2014), Antonioli M (2014)	2
PSMC4	6	PSMC6	0	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	4
PSMC6	0	PSMA1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMD2	2	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	PSMD8	1	affinity chromatography technology	Antonioli M (2014)	1
TRIM25	5	HSPD1	0	affinity chromatography technology	Choudhury NR (2017)	1
PRKN	1	PSMC4	6	affinity chromatography technology	Sarraf SA (2013)	1
SOCS3	0	AMBRA1	7	affinity chromatography technology	Huttlin EL (2017)	1
PSMC1	2	PSMC2	2	pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Gorbea C (2000), Hartmann-Petersen R (2001), Kaneko T (2009), Kaneko T (2009), Kim YC (2011), Kim YC (2011), Shim SM (2012), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	13
AMBRA1	7	GABARAP	0	affinity chromatography technology	Strappazzon F (2014)	1
PRKN	1	PIK3C3	1	affinity chromatography technology	Choubey V (2014)	1
CUL4A	2	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Guerrero-Santoro J (2008), Angers S (2006), Bennett EJ (2010), Bennett EJ (2010), Sertic S (2013)	5
PPP2CA	7	CCT3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Goudreault M (2009), Glatter T (2009), Hein MY (2015)	3
PPP2CA	7	PSMD3	5	biochemical	Havugimana PC (2012)	1
MYC	2	HSPD1	0	affinity chromatography technology	Koch HB (2007)	1
PSMC6	0	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
USP50	4	HSPA8	4	affinity chromatography technology	Aressy B (2010)	1
MAPK6	1	UBL4A	0	affinity chromatography technology	Rodriguez J (2016)	1
RNF2	1	CCT3	1	affinity chromatography technology	Cao Q (2014)	1
PSMA4	0	PSMA7	1	two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical, two hybrid, affinity chromatography technology, two hybrid, biochemical, biochemical, biochemical	Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Jayarapu K (2004), Nandi D (1997), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	10
PSMA1	1	PSMD6	0	biochemical, affinity chromatography technology, biochemical	Havugimana PC (2012), Huttlin EL (2015), Wan C (2015)	3
PSMC4	6	PSMA4	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBL4A	0	TUBA1A	13	affinity chromatography technology	Xu Y (2012)	1
PSMD13	1	PSMC3	0	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
CUL4A	2	DCAF7	4	affinity chromatography technology	Bennett EJ (2010)	1
UBC	7	PSMC1	2	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
AMBRA1	7	PSMB3	0	affinity chromatography technology	Antonioli M (2014)	1
RNF2	1	PSMC2	2	affinity chromatography technology	Cao Q (2014)	1
ACTN1	5	TUBA1A	13	fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology	Cerecedo D (2008), Cerecedo D (2008), Cerecedo D (2008)	3
RIPK4	0	BAG2	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMD13	1	PSMD8	1	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PRKN	1	PSMA7	1	affinity chromatography technology	Sarraf SA (2013)	1
MAPK6	1	PSMD12	1	affinity chromatography technology	Rodriguez J (2016)	1
DYNLL2	0	AMBRA1	7	affinity chromatography technology	Boldt K (2016)	1
PPP2CA	7	PSMC6	0	biochemical	Havugimana PC (2012)	1
EGLN3	0	DDA1	1	affinity chromatography technology	Rodriguez J (2016)	1
ASB8	0	AMBRA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Andresen CA (2014), Huttlin EL (2015), Huttlin EL (2017)	3
TRIM25	5	PSMD8	1	affinity chromatography technology	Choudhury NR (2017)	1
PRKN	1	PSMD8	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMD13	1	PSMC4	6	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
PSMD6	0	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
USP50	4	AMBRA1	7	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	HSPA5	0	pull down	Nathan JA (2013)	1
DCAF7	4	DYNLL1	0	affinity chromatography technology	Boldt K (2016)	1
PSMC2	2	PSMC3	0	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Tipler CP (1997), Kim YC (2011), Lee SH (2012), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	8
TUBA1A	13	TUBB3	3	biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2017)	2
EGLN3	0	DDB1	6	affinity chromatography technology	Rodriguez J (2016)	1
PSMC2	2	PSMD3	5	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
HPS1	1	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
EGLN3	0	CCT3	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMC1	2	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA5	0	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	PSMC6	0	affinity chromatography technology	Rodriguez J (2016)	1
PIK3C3	1	HSPA5	0	affinity chromatography technology	Yang Y (2013)	1
F12	0	HSPA8	4	affinity chromatography technology	Huttlin EL (2017)	1
UBL4A	0	HSPA8	4	affinity chromatography technology	Xu Y (2012)	1
PSMC5	4	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Wan C (2015)	3
PSMA2	1	PSMB2	0	affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Claverol S (2002), Bousquet-Dubouch MP (2009), Fricke B (2007), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	9
PSMC5	4	MYC	2	affinity chromatography technology	von der Lehr N (2003)	1
PRKN	1	UBC	7	enzymatic study, imaging technique, enzymatic study, fluorescent resonance energy transfe, pull down, pull down, pull down, pull down, x-ray crystallography, imaging technique, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study, pull down, x-ray crystallography, enzymatic study	Kondapalli C (2012), Kane LA (2014), Kane LA (2014), Koyano F (2014), Zheng X (2013), Shiba-Fukushima K (2014), Shiba-Fukushima K (2014), Kumar A (2015), Kumar A (2015), Okatsu K (2015), Okatsu K (2015), Okatsu K (2015), Yamano K (2015), Fiesel FC (2015), Ordureau A (2015), Kazlauskaite A (2015), Kazlauskaite A (2015), Kumar A (2017), Kliza K (2017)	19
PSMC4	6	PSMA5	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MAPK6	1	CCT8	0	affinity chromatography technology	Rodriguez J (2016)	1
CUL4B	8	GPS1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Hein MY (2015), Higa LA (2006)	3
PSMD10	1	PSMD12	1	affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Huttlin EL (2017)	3
PSMC6	0	PSMC1	2	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
TUBA1A	13	MTOR	14	genetic interference	Srivas R (2016)	1
CUL7	4	PSMD2	2	affinity chromatography technology	Hanson D (2014)	1
PSMB5	3	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MYC	2	PPP2CA	7	affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Arnold HK (2009), Junttila MR (2007), Cianfanelli V (2015), Cianfanelli V (2015)	4
PSMC6	0	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	UBL4A	0	affinity chromatography technology	Antonioli M (2014)	1
TRIM25	5	PPP2R1A	8	affinity chromatography technology	Choudhury NR (2017)	1
PSMA3	1	HSP90AA1	7	affinity chromatography technology	Fedorova OA (2011)	1
TRAF6	0	PSMC1	2	affinity chromatography technology	Bouwmeester T (2004)	1
PRKN	1	PSMA5	0	affinity chromatography technology	Sarraf SA (2013)	1
PSMC3	0	STIP1	1	biochemical	Havugimana PC (2012)	1
PSMD13	1	PSMD12	1	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
CUL4B	8	HSPA8	4	affinity chromatography technology	Bennett EJ (2010)	1
TUBA1A	13	MYC	2	affinity chromatography technology	Conacci-Sorrell M (2010)	1
PSMC1	2	PSMB5	3	affinity chromatography technology, biochemical, biochemical	Kim YC (2011), Havugimana PC (2012), Wan C (2015)	3
PSMC6	0	PSMB5	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
ULK1	8	AMBRA1	7	enzymatic study, affinity chromatography technology, affinity chromatography technology	Di Bartolomeo S (2010), Nazio F (2013), Nazio F (2013)	3
PSMC4	6	PSMC3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Lee SH (2012), Lee SH (2012), Ohana B (1993), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	9
MYC	2	PSMA5	0	affinity chromatography technology	Koch HB (2007)	1
PRKN	1	HSPA8	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2003), Zanon A (2013)	4
DCAF7	4	CCT8	0	affinity chromatography technology, affinity chromatography technology	Miyata Y (2014), Hauri S (2016)	2
TRIM25	5	PSMC5	4	affinity chromatography technology	Choudhury NR (2017)	1
EGLN3	0	PSMC4	6	affinity chromatography technology	Rodriguez J (2016)	1
CAMKMT	1	HSPA5	0	affinity chromatography technology	Cloutier P (2013)	1
PSMC2	2	PSMA4	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC4	6	PSMD2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	6
PRKN	1	PSMC1	2	affinity chromatography technology, pull down	Sarraf SA (2013), Aguileta MA (2015)	2
RIPK4	0	DNAJB1	1	affinity chromatography technology	Rodriguez J (2016)	1
MAPK6	1	STIP1	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMA3	1	CCT8	0	affinity chromatography technology	Fedorova OA (2011)	1
F12	0	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
AMBRA1	7	DNAJB1	1	affinity chromatography technology	Antonioli M (2014)	1
PSMA2	1	HSPA5	0	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
PSMC5	4	TRAF6	0	affinity chromatography technology	Huttlin EL (2017)	1
PSMC4	6	PSMA6	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	CCT4	2	affinity chromatography technology	Rodriguez J (2016)	1
TRIM25	5	AMBRA1	7	affinity chromatography technology	Choudhury NR (2017)	1
CUL7	4	PSMC5	4	affinity chromatography technology	Hanson D (2014)	1
DDA1	1	COPS8	2	affinity chromatography technology	Olma MH (2009)	1
WSB2	1	DDA1	1	affinity chromatography technology	Huttlin EL (2017)	1
RNF2	1	PIK3C3	1	affinity chromatography technology	Xia P (2014)	1
AMBRA1	7	PSMD2	2	affinity chromatography technology	Antonioli M (2014)	1
DDB1	6	DCAF7	4	affinity chromatography technology	Jin J (2006)	1
BCL2	0	BECN1	2	two hybrid, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Liang XH (1998), Liang XH (1998), Chen D (2010), Xu C (2011), Chang NC (2010), Strappazzon F (2011), Zhou L (2013), Molejon MI (2013), Yang L (2012), Yang L (2012), Trisciuoglio D (2013), Han J (2012), Wang Y (2013), Wang Y (2013), Luciani A (2010), Luciani A (2010), Ciechomska IA (2009), Noble CG (2008), Noble CG (2008), Sun Q (2008), Rovito D (2013), Pattingre S (2005), Pattingre S (2005), Criollo A (2010), Tang D (2010), Tang D (2010), Chauhan S (2015), Rui YN (2015), Rui YN (2015), Verma N (2017), Yuan G (2014), Li X (2017)	32
AMBRA1	7	GPS1	1	affinity chromatography technology	Antonioli M (2014)	1
NES	2	AMBRA1	7	affinity chromatography technology	Hein MY (2015)	1
PSMB5	3	PSMA3	1	two hybrid, two hybrid, biochemical, biochemical, biochemical	Jayarapu K (2004), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
PSMA1	1	DDB1	6	biochemical	Wan C (2015)	1
PSMD10	1	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HSPA5	0	HSPA8	4	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015)	3
PSMC6	0	PSMA6	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA2	1	PSMA1	1	affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, two hybrid, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Claverol S (2002), Jayarapu K (2004), Jayarapu K (2004), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Wang J (2011), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	12
EGLN3	0	PSMB2	0	affinity chromatography technology	Rodriguez J (2016)	1
IRGM	1	BECN1	2	affinity chromatography technology, affinity chromatography technology	Chauhan S (2015), Chauhan S (2015)	2
EGLN3	0	PSMC2	2	affinity chromatography technology	Rodriguez J (2016)	1
HSP90AA1	7	TRIM10	3	affinity chromatography technology	Taipale M (2012)	1
STIP1	1	HSP90AA1	7	pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Scheufler C (2000), Johnson BD (1998), Mollapour M (2010), Li J (2011), Kundrat L (2010), Tsutsumi S (2012), Sarkar S (2012), Gano JJ (2010), Skarra DV (2011), Horibe T (2011), Brinker A (2002), Taipale M (2014), Taipale M (2014), Mollapour M (2014), Graumann K (2000), Hein MY (2015), Chadli A (2010), Chadli A (2008), Woodford MR (2016), Scholz GM (2001), Sun L (2012), Woodford MR (2016), Huttlin EL (2017)	23
PSMA5	0	CCT3	1	biochemical	Havugimana PC (2012)	1
PRKN	1	PSMA3	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMB2	0	PSMB3	0	two hybrid, two hybrid, two hybrid, two hybrid, two hybrid, biochemical, biochemical, biochemical, affinity chromatography technology	Jayarapu K (2004), Jayarapu K (2004), Jayarapu K (2007), Fricke B (2007), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	9
UBC	7	PSMC4	6	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
GPS1	1	CUL4A	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Stotland A (2012), He YJ (2006), McCall CM (2008), Bennett EJ (2010), Scherer PC (2016)	5
PSMA6	1	PSMB3	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
TRAF6	0	TRIM25	5	two hybrid	Woodsmith J (2012)	1
PSMD10	1	PSMC6	0	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
PSMC3	0	PSMA4	0	biochemical	Wan C (2015)	1
DYNLL1	0	DYNLL2	0	biochemical, affinity chromatography technology	Wan C (2015), Boldt K (2016)	2
CCT4	2	PSMC2	2	biochemical	Wan C (2015)	1
COPS5	0	ELOB	1	affinity chromatography technology	Bennett EJ (2010)	1
AMBRA1	7	CCT4	2	affinity chromatography technology	Antonioli M (2014)	1
PRKN	1	CCT3	1	affinity chromatography technology	Zanon A (2013)	1
PPP2CA	7	CCT2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Goudreault M (2009), Glatter T (2009), Hein MY (2015)	3
MAPK6	1	HSPA8	4	affinity chromatography technology	Rodriguez J (2016)	1
PSMA6	1	PSMA7	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, two hybrid, biochemical, biochemical, biochemical, pull down	Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Apcher GS (2004), Jayarapu K (2004), Fricke B (2007), Fricke B (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Ishii K (2015)	11
PSMA4	0	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC4	6	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMC3	0	PSMC1	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	8
PSMC3	0	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
CAMKMT	1	CCT2	1	affinity chromatography technology	Cloutier P (2013)	1
RFPL4B	0	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
AMBRA1	7	WDR1	3	affinity chromatography technology	Antonioli M (2014)	1
PSMA7	1	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
ULK1	8	RPTOR	4	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dunlop EA (2011), Dunlop EA (2011), Dunlop EA (2011), Rui YN (2015), Rui YN (2015)	5
RNF2	1	DCAF7	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cao Q (2014), Hauri S (2016), Hauri S (2016)	3
TRIM25	5	PSMD2	2	affinity chromatography technology	Choudhury NR (2017)	1
PRKN	1	PSMB3	0	affinity chromatography technology	Sarraf SA (2013)	1
PSMD10	1	HSP90AA1	7	affinity chromatography technology	Nanaware PP (2014)	1
CUL7	4	STIP1	1	affinity chromatography technology	Hanson D (2014)	1
HSPA8	4	STIP1	1	biochemical, far western blotting, pull down, pull down, pull down, biochemical	Havugimana PC (2012), Gebauer M (1998), Gebauer M (1998), Liu FH (1999), Tsukahara F (2000), Wan C (2015)	6
TRIM25	5	DDB1	6	affinity chromatography technology	Choudhury NR (2017)	1
DDB1	6	AMBRA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jin J (2006), Behrends C (2010), Jin J (2006), Antonioli M (2014), Antonioli M (2014)	5
COPS5	0	CUL4B	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Bennett EJ (2010), Bennett EJ (2010), Bennett EJ (2010), Olma MH (2009), He F (2013), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	9
PSMC2	2	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC1	2	PSMD3	5	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015)	4
MAPK6	1	CCT2	1	affinity chromatography technology	Rodriguez J (2016)	1
PPP2R1A	8	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Cianfanelli V (2015), Cianfanelli V (2015)	2
PSMC5	4	PSMD2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Hamazaki J (2007), Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	5
GABARAP	0	ATG4B	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Behrends C (2010), Dunlop EA (2014)	4
PSMC1	2	PSMB3	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
PSMD10	1	PSMC2	2	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Sun S (2017)	5
EGLN3	0	UBL4A	0	affinity chromatography technology	Rodriguez J (2016)	1
HSP90AA1	7	BAG2	0	affinity chromatography technology	Gano JJ (2010)	1
UBE2D3	1	TRAF6	0	two hybrid, enzymatic study, pull down, pull down, pull down	Markson G (2009), Petroski MD (2007), Xia ZP (2009), Markson G (2009), Wauer T (2015)	5
AMBRA1	7	PSMC2	2	affinity chromatography technology	Antonioli M (2014)	1
TRIM25	5	UBC	7	enzymatic study	Sanchez JG (2016)	1
PSMB5	3	PSMD12	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
FBXW11	2	DCAF7	4	affinity chromatography technology	Low TY (2014)	1
AMBRA1	7	ACTN1	5	affinity chromatography technology	Antonioli M (2014)	1
PSMC4	6	PSMC5	4	two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Ewing RM (2007), Hendil KB (2009), Kaneko T (2009), Kaneko T (2009), Lee SH (2012), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Albers M (2005), Albers M (2005), Huttlin EL (2017)	13
CUL7	4	TRIM25	5	affinity chromatography technology	Hanson D (2014)	1
COPS5	0	DDA1	1	affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Olma MH (2009)	2
UBC	7	CCT2	1	affinity chromatography technology	Bish RA (2007)	1
ATG3	4	BECN1	2	pull down	Qiu Y (2013)	1
PSMA2	1	PSMA6	1	affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Bloom J (2006), Claverol S (2002), Jayarapu K (2004), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	9
MYC	2	PSMA7	1	affinity chromatography technology	Koch HB (2007)	1
BCL2	0	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Strappazzon F (2011), Strappazzon F (2011)	2
PSMA3	1	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PRKN	1	UBE2D3	1	pull down, pull down, pull down	Shin JH (2011), Wenzel DM (2011), Kazlauskaite A (2014)	3
PSMC1	2	PSMA4	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMA2	1	PSMC6	0	affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Wan C (2015)	2
AMBRA1	7	DYNLL1	0	two hybrid, affinity chromatography technology, affinity chromatography technology	Di Bartolomeo S (2010), Di Bartolomeo S (2010), Boldt K (2016)	3
UBC	7	PSMA2	1	affinity chromatography technology	Matsumoto M (2005)	1
PSMC1	2	PSMA1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC6	0	STIP1	1	biochemical	Havugimana PC (2012)	1
UBC	7	PSMD8	1	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
PRKN	1	CCT2	1	affinity chromatography technology	Imai Y (2003)	1
RIPK4	0	PPP2R1A	8	affinity chromatography technology	Rodriguez J (2016)	1
MYC	2	DDB1	6	affinity chromatography technology	Choi SH (2010)	1
CUL7	4	HSPA5	0	affinity chromatography technology	Hanson D (2014)	1
MYC	2	PSMA3	1	affinity chromatography technology	Koch HB (2007)	1
CUL4B	8	HSPA5	0	affinity chromatography technology	Bennett EJ (2010)	1
PSMC6	0	PSMA4	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	PSMA6	1	affinity chromatography technology	Antonioli M (2014)	1
PSMC6	0	PSMD8	1	affinity chromatography technology, biochemical, biochemical, biochemical	Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMC1	2	PSMD12	1	biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, genetic interference	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Horlbeck MA (2018)	6
PSMD6	0	PSMD2	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
BAG2	0	DNAJB1	1	affinity chromatography technology, affinity chromatography technology	Taipale M (2014), Taipale M (2014)	2
PSMD10	1	PSMC5	4	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Kaneko T (2009), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	5
PSMA2	1	PSMA4	0	affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Claverol S (2002), Apcher GS (2004), Apcher GS (2004), Jayarapu K (2004), Jayarapu K (2004), Nandi D (1997), Bousquet-Dubouch MP (2009), Fricke B (2007), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	13
PSMD2	2	PSMD8	1	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
PSMC5	4	PSMA7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
PSMB3	0	PSMD3	5	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
COPS5	0	UBC	7	affinity chromatography technology	Bennett EJ (2010)	1
PRKN	1	DNAJB1	1	affinity chromatography technology	Imai Y (2002)	1
PSMD10	1	PSMC1	2	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
PSMD10	1	PSMD6	0	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
PSMA2	1	PSMD13	1	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PPP2CA	7	PPP2R1A	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, bioid, bioid	Goudreault M (2009), Goudreault M (2009), Zhou J (2003), Zhou J (2003), Glatter T (2009), Glatter T (2009), Sablina AA (2007), Sablina AA (2007), Kong M (2009), Kong M (2009), Shamay M (2012), Havugimana PC (2012), Junttila MR (2007), Junttila MR (2007), Nazarenko I (2007), Kristensen AR (2012), Fogeron ML (2013), Sablina AA (2010), Lee CW (2014), Wan C (2015), Hein MY (2015), Hein MY (2015), Cianfanelli V (2015), St-Denis N (2016), Bryant JC (1999), Shouse GP (2011), Yadav L (2017), Yadav L (2017), Yadav L (2017), Yadav L (2017)	30
TRAF6	0	PSMD13	1	affinity chromatography technology	Bouwmeester T (2004)	1
AMBRA1	7	PSMC3	0	affinity chromatography technology	Antonioli M (2014)	1
PRKN	1	BAG2	0	affinity chromatography technology	Zanon A (2013)	1
PSMA6	1	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
AMBRA1	7	PSMD10	1	affinity chromatography technology	Antonioli M (2014)	1
DCAF7	4	DYNLL2	0	affinity chromatography technology	Boldt K (2016)	1
RPTOR	4	CUL4B	8	affinity chromatography technology	Hussain S (2013)	1
TRAF6	0	PSMC2	2	affinity chromatography technology	Bouwmeester T (2004)	1
343068	0	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
RIPK4	0	PSMC2	2	affinity chromatography technology	Rodriguez J (2016)	1
RNF2	1	PSMD12	1	affinity chromatography technology	Cao Q (2014)	1
PSMA4	0	PSMD3	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
LRRC42	2	AMBRA1	7	affinity chromatography technology	Huttlin EL (2015)	1
TRIM25	5	BAG2	0	affinity chromatography technology	Choudhury NR (2017)	1
MAPK6	1	SOCS3	0	two hybrid	Vinayagam A (2011)	1
TRAF6	0	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Nazio F (2013), Antonioli M (2014)	2
EGLN3	0	CCT2	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMA5	0	PSMA4	0	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, biochemical, biochemical	Apcher GS (2004), Apcher GS (2004), Nandi D (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	6
AMBRA1	7	BAG2	0	affinity chromatography technology	Antonioli M (2014)	1
PSMD6	0	PSMD12	1	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
TUBA1A	13	UBC	7	affinity chromatography technology	Seiberlich V (2012)	1
PSMC2	2	CCT3	1	biochemical	Wan C (2015)	1
PSMA3	1	PSMD8	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	TUBB3	3	affinity chromatography technology	Rodriguez J (2016)	1
AMBRA1	7	HSP90AA1	7	affinity chromatography technology	Antonioli M (2014)	1
PSMA1	1	PSMA6	1	two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Jayarapu K (2004), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
PSMC2	2	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC5	4	PSMD3	5	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
CCT4	2	CCT8	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CUL4A	2	AMBRA1	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Bennett EJ (2010), Olma MH (2009), Jin J (2006), Antonioli M (2014), Antonioli M (2014), Antonioli M (2014)	6