PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000317907	[[32853128, 32853447], [32855589, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046118]]	[[32853359, 32853447], [32855589, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046005]]
ENST00000454690	[[32853222, 32853447], [32903922, 32903989], [32927873, 32927987], [32958894, 32958988]]	[[32853359, 32853447], [32903922, 32903960]]
ENST00000428527	[[33002948, 33003047], [33005120, 33005179], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682]]	[[33002948, 33003047], [33005120, 33005162]]
ENST00000448773	[[32853098, 32853200], [32855589, 32855767], [32858942, 32859072], [32865336, 32865435]]	[[32855651, 32855767], [32858942, 32859072], [32865336, 32865435]]
ENST00000438654	[[32903944, 32903989], [32927873, 32927987], [32929927, 32930065]]	[[32903944, 32903989], [32927873, 32927987], [32929927, 32929984]]
ENST00000433416	[[32961851, 32961883], [32983358, 32983586], [32991534, 32991616], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216]]	[[32961851, 32961883], [32983358, 32983586], [32991534, 32991576]]
NM_001193509	[[32853086, 32853200], [32855589, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046118]]	[[32855651, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046005]]
NM_017735	[[32853086, 32853447], [32855589, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046118]]	[[32853359, 32853447], [32855589, 32855767], [32858942, 32859072], [32865336, 32865477], [32875197, 32875300], [32889369, 32889534], [32891701, 32891835], [32897338, 32897451], [32903922, 32903989], [32927873, 32927987], [32958894, 32958990], [32961760, 32961883], [32983358, 32983586], [33002948, 33003047], [33007692, 33007745], [33012050, 33012216], [33036090, 33036288], [33037570, 33037682], [33042523, 33042624], [33045882, 33046005]]

Promoter

Chrom	Start	End	Description
chr2	32853093	32853127	CAGE_peak_2_at_TTC27_5end
chr2	32853135	32853189	CAGE_peak_1_at_TTC27_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I032038	32038743	32040924	2.03	[{'connected_gene': 'DPY30', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 32.11}, {'connected_gene': 'BIRC6', 'score': 12.53}, {'connected_gene': 'TTC27', 'score': 10.0}, {'connected_gene': 'NLRC4', 'score': 5.46}, {'connected_gene': 'ENSG00000271228', 'score': 0.31}]
chr2	GH02I032277	32277072	32279201	2.03	[{'connected_gene': 'YIPF4', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 21.45}, {'connected_gene': 'BIRC6', 'score': 19.96}, {'connected_gene': 'TTC27', 'score': 15.14}, {'connected_gene': 'DDX50P1', 'score': 14.91}, {'connected_gene': 'RNU6-647P', 'score': 10.56}, {'connected_gene': 'NLRC4', 'score': 4.71}, {'connected_gene': 'ENSG00000272754', 'score': 0.26}]
chr2	GH02I032328	32328171	32330420	0.91	[{'connected_gene': 'YIPF4', 'score': 13.04}, {'connected_gene': 'TTC27', 'score': 7.25}, {'connected_gene': 'ENSG00000272754', 'score': 0.44}, {'connected_gene': 'BIRC6', 'score': 0.31}]
chr2	GH02I032463	32463899	32465169	0.2	[{'connected_gene': 'MIR558', 'score': 11.42}, {'connected_gene': 'BIRC6', 'score': 11.36}, {'connected_gene': 'TTC27', 'score': 5.47}, {'connected_gene': 'ENSG00000276334', 'score': 0.22}, {'connected_gene': 'BIRC6-AS1', 'score': 0.18}]
chr2	GH02I032617	32617441	32618483	0.71	[{'connected_gene': 'MIR558', 'score': 10.58}, {'connected_gene': 'BIRC6', 'score': 10.47}, {'connected_gene': 'TTC27', 'score': 5.06}, {'connected_gene': 'GC02M032591', 'score': 0.31}]
chr2	GH02I032261	32261601	32266210	1.59	[{'connected_gene': 'NLRC4', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 20.97}, {'connected_gene': 'BIRC6', 'score': 16.91}, {'connected_gene': 'DDX50P1', 'score': 12.8}, {'connected_gene': 'TTC27', 'score': 11.55}, {'connected_gene': 'GC02M032177', 'score': 0.26}]
chr2	GH02I032425	32425267	32426890	0.58	[{'connected_gene': 'BIRC6', 'score': 11.15}, {'connected_gene': 'MIR558', 'score': 11.09}, {'connected_gene': 'TTC27', 'score': 6.11}, {'connected_gene': 'BIRC6-AS1', 'score': 0.25}, {'connected_gene': 'ENSG00000276334', 'score': 0.15}]
chr2	GH02I032288	32288202	32290600	1.07	[{'connected_gene': 'BIRC6', 'score': 29.2}, {'connected_gene': 'NLRC4', 'score': 16.74}, {'connected_gene': 'DDX50P1', 'score': 16.55}, {'connected_gene': 'TTC27', 'score': 15.83}, {'connected_gene': 'SLC30A6', 'score': 11.91}, {'connected_gene': 'YIPF4', 'score': 11.18}, {'connected_gene': 'RNU6-647P', 'score': 10.87}, {'connected_gene': 'MIR558', 'score': 9.72}, {'connected_gene': 'ENSG00000272754', 'score': 0.29}]
chr2	GH02I033299	33296754	33297418	0.49	[{'connected_gene': 'BIRC6', 'score': 22.06}, {'connected_gene': 'TTC27', 'score': 10.14}, {'connected_gene': 'RNA5SP91', 'score': 0.39}, {'connected_gene': 'GC02M033286', 'score': 0.39}, {'connected_gene': 'RNA5SP92', 'score': 0.28}, {'connected_gene': 'LTBP1', 'score': 0.05}]
chr2	GH02I032804	32804794	32805989	0.86	[{'connected_gene': 'BIRC6', 'score': 9.94}, {'connected_gene': 'LINC00486', 'score': 0.34}, {'connected_gene': 'GC02M032770', 'score': 0.29}, {'connected_gene': 'TTC27', 'score': 0.1}]
chr2	GH02I031983	31983556	31984691	0.52	[{'connected_gene': 'BIRC6', 'score': 19.83}, {'connected_gene': 'DDX50P1', 'score': 14.8}, {'connected_gene': 'TTC27', 'score': 11.13}, {'connected_gene': 'SLC30A6', 'score': 10.99}, {'connected_gene': 'MEMO1', 'score': 0.31}, {'connected_gene': 'GC02P031938', 'score': 0.25}, {'connected_gene': 'DPY30', 'score': 0.22}]
chr2	GH02I032164	32164460	32168155	2.11	[{'connected_gene': 'SLC30A6', 'score': 607.83}, {'connected_gene': 'ENSG00000272716', 'score': 559.1}, {'connected_gene': 'GC02M032166', 'score': 550.77}, {'connected_gene': 'BIRC6', 'score': 47.0}, {'connected_gene': 'DDX50P1', 'score': 32.71}, {'connected_gene': 'TTC27', 'score': 31.23}, {'connected_gene': 'RNU6-647P', 'score': 10.51}, {'connected_gene': 'NLRC4', 'score': 5.52}, {'connected_gene': 'GC02P032156', 'score': 0.39}]
chr2	GH02I032646	32646558	32647909	0.63	[{'connected_gene': 'TTC27', 'score': 22.03}, {'connected_gene': 'MIR558', 'score': 10.81}, {'connected_gene': 'BIRC6', 'score': 10.75}, {'connected_gene': 'MIR4765', 'score': 0.39}, {'connected_gene': 'GC02M032770', 'score': 0.13}]
chr2	GH02I032697	32697294	32697443	0.54	[{'connected_gene': 'TTC27', 'score': 10.7}, {'connected_gene': 'MIR558', 'score': 10.26}, {'connected_gene': 'BIRC6', 'score': 10.21}, {'connected_gene': 'MIR4765', 'score': 0.21}, {'connected_gene': 'GC02M032770', 'score': 0.18}]
chr2	GH02I032627	32627014	32629001	2.02	[{'connected_gene': 'TTC27', 'score': 560.89}, {'connected_gene': 'BIRC6', 'score': 22.1}, {'connected_gene': 'DDX50P1', 'score': 14.62}, {'connected_gene': 'SLC30A6', 'score': 14.04}, {'connected_gene': 'DPY30', 'score': 4.59}, {'connected_gene': 'GC02M032591', 'score': 0.28}]
chr2	GH02I032418	32418222	32419562	0.56	[{'connected_gene': 'TTC27', 'score': 5.3}, {'connected_gene': 'SLC30A6', 'score': 4.11}, {'connected_gene': 'BIRC6-AS1', 'score': 0.28}, {'connected_gene': 'BIRC6', 'score': 0.21}, {'connected_gene': 'ENSG00000276334', 'score': 0.15}]
chr2	GH02I032792	32792213	32793008	0.38	[{'connected_gene': 'TTC27', 'score': 4.37}, {'connected_gene': 'GC02M032770', 'score': 0.37}, {'connected_gene': 'LINC00486', 'score': 0.29}]
chr2	GH02I032484	32484398	32486225	0.87	[{'connected_gene': 'TTC27', 'score': 4.41}, {'connected_gene': 'ENSG00000276334', 'score': 0.28}, {'connected_gene': 'BIRC6-AS1', 'score': 0.14}, {'connected_gene': 'BIRC6', 'score': 0.13}]
chr2	GH02I032768	32768454	32768603	0.94	[{'connected_gene': 'TTC27', 'score': 10.07}, {'connected_gene': 'GC02M032770', 'score': 0.77}, {'connected_gene': 'MIR4765', 'score': 0.12}]
chr2	GH02I032632	32632254	32632363	0.62	[{'connected_gene': 'TTC27', 'score': 0.77}, {'connected_gene': 'MIR4765', 'score': 0.77}]
chr2	GH02I032756	32756001	32756400	0.2	[{'connected_gene': 'TTC27', 'score': 14.76}, {'connected_gene': 'GC02M032770', 'score': 0.37}, {'connected_gene': 'MIR4765', 'score': 0.13}]
chr2	GH02I032715	32715346	32716275	0.73	[{'connected_gene': 'TTC27', 'score': 5.97}, {'connected_gene': 'GC02M032770', 'score': 0.22}, {'connected_gene': 'MIR4765', 'score': 0.18}]
chr2	GH02I033092	33092648	33093460	0.31	[{'connected_gene': 'TTC27', 'score': 8.91}, {'connected_gene': 'TYW1P1', 'score': 0.34}, {'connected_gene': 'GC02M033047', 'score': 0.34}, {'connected_gene': 'LTBP1', 'score': 0.11}]
chr2	GH02I033474	33474762	33480889	2.5	[{'connected_gene': 'RASGRP3', 'score': 575.09}, {'connected_gene': 'TTC27', 'score': 11.09}, {'connected_gene': 'LOC105374454', 'score': 0.17}]
chr2	GH02I032284	32284201	32284801	0.31	[{'connected_gene': 'RNU6-647P', 'score': 10.47}, {'connected_gene': 'BIRC6', 'score': 10.08}, {'connected_gene': 'TTC27', 'score': 4.75}, {'connected_gene': 'YIPF4', 'score': 0.44}, {'connected_gene': 'ENSG00000272754', 'score': 0.28}]
chr2	GH02I032355	32355852	32359624	2.09	[{'connected_gene': 'GC02M032356', 'score': 550.77}, {'connected_gene': 'BIRC6', 'score': 550.77}, {'connected_gene': 'DDX50P1', 'score': 10.23}, {'connected_gene': 'TTC27', 'score': 6.55}]
chr2	GH02I032772	32772800	32773001	0.77	[{'connected_gene': 'GC02M032770', 'score': 550.77}, {'connected_gene': 'TTC27', 'score': 5.09}, {'connected_gene': 'MIR4765', 'score': 0.12}]
chr2	GH02I032711	32711200	32711601	0.66	[{'connected_gene': 'GC02M032770', 'score': 0.21}, {'connected_gene': 'MIR4765', 'score': 0.18}, {'connected_gene': 'TTC27', 'score': 0.18}]