PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373255	[[71812551, 71812756], [71835355, 71835586], [71849815, 71849922], [71851512, 71851710], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868963], [71871273, 71872036]]	[[71835414, 71835586], [71849815, 71849922], [71851512, 71851710], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868963], [71871273, 71871439]]
ENST00000455786	[[71812635, 71812756], [71835355, 71835586], [71849815, 71849922], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868936]]	[[71835414, 71835586], [71849815, 71849922], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868936]]
NM_018649	[[71812356, 71812756], [71835355, 71835586], [71849815, 71849922], [71851512, 71851710], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868963], [71871273, 71872040]]	[[71835414, 71835586], [71849815, 71849922], [71851512, 71851710], [71853490, 71853601], [71855409, 71855509], [71859963, 71860053], [71868788, 71868963], [71871273, 71871439]]

Promoter

Chrom	Start	End	Description
chr10	71812074	71812078	CAGE_peak_5_at_H2AFY2_5end
chr10	71812102	71812136	CAGE_peak_3_at_H2AFY2_5end
chr10	71812337	71812348	CAGE_peak_4_at_H2AFY2_5end
chr10	71812562	71812573	CAGE_peak_2_at_H2AFY2_5end
chr10	71812577	71812644	CAGE_peak_1_at_H2AFY2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I070089	70089949	70094003	1.06	[{'connected_gene': 'NPFFR1', 'score': 15.52}, {'connected_gene': 'TYSND1', 'score': 11.1}, {'connected_gene': 'CALM2P2', 'score': 11.06}, {'connected_gene': 'SAR1A', 'score': 11.05}, {'connected_gene': 'LRRC20', 'score': 4.93}, {'connected_gene': 'PIR45222', 'score': 0.44}, {'connected_gene': 'H2AFY2', 'score': 0.28}]
chr10	GH10I070009	70009317	70009644	0.27	[{'connected_gene': 'H2AFY2', 'score': 5.56}, {'connected_gene': 'SUPV3L1', 'score': 5.08}, {'connected_gene': 'LOC102723350', 'score': 0.39}, {'connected_gene': 'LOC105378347', 'score': 0.09}]
chr10	GH10I070081	70081066	70081466	0.55	[{'connected_gene': 'H2AFY2', 'score': 11.63}, {'connected_gene': 'TYSND1', 'score': 10.52}, {'connected_gene': 'CALM2P2', 'score': 10.49}, {'connected_gene': 'SAR1A', 'score': 10.48}, {'connected_gene': 'PIR45222', 'score': 0.37}]
chr10	GH10I069915	69915666	69915669	0.22	[{'connected_gene': 'H2AFY2', 'score': 5.78}, {'connected_gene': 'LOC105378347', 'score': 0.16}, {'connected_gene': 'LOC102723350', 'score': 0.15}, {'connected_gene': 'COL13A1', 'score': 0.14}]
chr10	GH10I069960	69960652	69961751	0.69	[{'connected_gene': 'H2AFY2', 'score': 10.23}, {'connected_gene': 'LOC102723350', 'score': 0.22}, {'connected_gene': 'LOC105378347', 'score': 0.11}, {'connected_gene': 'COL13A1', 'score': 0.1}]
chr10	GH10I069956	69956001	69956800	0.52	[{'connected_gene': 'H2AFY2', 'score': 20.21}, {'connected_gene': 'LOC102723350', 'score': 0.21}, {'connected_gene': 'LOC105378347', 'score': 0.12}, {'connected_gene': 'COL13A1', 'score': 0.1}]
chr10	GH10I070052	70052210	70054501	1.91	[{'connected_gene': 'H2AFY2', 'score': 557.2}, {'connected_gene': 'PIR45222', 'score': 0.26}]
chr10	GH10I070108	70108355	70108587	0.38	[{'connected_gene': 'TYSND1', 'score': 10.85}, {'connected_gene': 'CALM2P2', 'score': 10.8}, {'connected_gene': 'SAR1A', 'score': 10.78}, {'connected_gene': 'PIR50368', 'score': 0.44}, {'connected_gene': 'PIR45222', 'score': 0.39}, {'connected_gene': 'AIFM2', 'score': 0.34}, {'connected_gene': 'H2AFY2', 'score': 0.22}]
chr10	GH10I070107	70107345	70107514	0.77	[{'connected_gene': 'TYSND1', 'score': 10.85}, {'connected_gene': 'CALM2P2', 'score': 10.8}, {'connected_gene': 'SAR1A', 'score': 10.78}, {'connected_gene': 'PIR50368', 'score': 0.44}, {'connected_gene': 'PIR45222', 'score': 0.39}, {'connected_gene': 'AIFM2', 'score': 0.31}, {'connected_gene': 'H2AFY2', 'score': 0.23}]
chr10	GH10I069898	69898065	69902548	1.36	[{'connected_gene': 'FAM241B', 'score': 9.81}, {'connected_gene': 'H2AFY2', 'score': 2.0}, {'connected_gene': 'LOC105378347', 'score': 0.18}, {'connected_gene': 'COL13A1', 'score': 0.15}, {'connected_gene': 'LOC102723350', 'score': 0.13}]