PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374464	[[43633933, 43634015], [43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43657647, 43657669]]	[[43650597, 43651258], [43654162, 43654379], [43655941, 43656043], [43657647, 43657669]]
ENST00000374466	[[43633933, 43634015], [43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43662451, 43662546], [43671398, 43671480], [43678697, 43680756]]	[[43650597, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43662451, 43662546], [43671398, 43671480], [43678697, 43678990]]
NM_018590	[[43633892, 43634015], [43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43662451, 43662546], [43671398, 43671480], [43678697, 43680756]]	[[43650597, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43662451, 43662546], [43671398, 43671480], [43678697, 43678990]]
NR_135077	[[43633892, 43634015], [43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43657647, 43657808], [43659313, 43659492], [43662451, 43662546], [43671398, 43671480], [43678697, 43680756]]	None
NM_001319656	[[43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43671398, 43671480], [43678697, 43680756]]	[[43650597, 43651258], [43654162, 43654379], [43655941, 43656043], [43671398, 43671447]]
NM_001319654	[[43650344, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43671398, 43671480], [43678697, 43680756]]	[[43650597, 43651258], [43654162, 43654379], [43655941, 43656043], [43659313, 43659492], [43671398, 43671480], [43678697, 43678707]]

Promoter

Chrom	Start	End	Description
chr10	43633883	43633904	CAGE_peak_1_at_CSGALNACT2_5end
chr10	43633914	43633935	CAGE_peak_2_at_CSGALNACT2_5end
chr10	43633941	43633960	CAGE_peak_3_at_CSGALNACT2_5end
chr10	43633962	43633969	CAGE_peak_5_at_CSGALNACT2_5end
chr10	43633970	43633986	CAGE_peak_4_at_CSGALNACT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I044010	44010646	44011847	0.94	[{'connected_gene': 'ZNF22', 'score': 4.66}, {'connected_gene': 'CSGALNACT2', 'score': 4.33}, {'connected_gene': 'PIR37397', 'score': 0.15}, {'connected_gene': 'ENSG00000237590', 'score': 0.07}]
chr10	GH10I042932	42932567	42934915	0.83	[{'connected_gene': 'RET', 'score': 11.51}, {'connected_gene': 'CSGALNACT2', 'score': 8.59}, {'connected_gene': 'LOC441666', 'score': 7.65}, {'connected_gene': 'ENSG00000259869', 'score': 6.57}, {'connected_gene': 'ZNF33B', 'score': 4.25}, {'connected_gene': 'GC10M042909', 'score': 0.34}, {'connected_gene': 'LINC01264', 'score': 0.25}]
chr10	GH10I043077	43076493	43076582	0.59	[{'connected_gene': 'RET', 'score': 550.77}, {'connected_gene': 'CSGALNACT2', 'score': 18.58}, {'connected_gene': 'GC10M043057', 'score': 0.37}]
chr10	GH10I043076	43076800	43077601	1.45	[{'connected_gene': 'RET', 'score': 550.77}, {'connected_gene': 'CSGALNACT2', 'score': 20.74}, {'connected_gene': 'PIR60596', 'score': 0.34}]
chr10	GH10I043104	43104593	43106142	1.72	[{'connected_gene': 'CSGALNACT2', 'score': 32.12}, {'connected_gene': 'RET', 'score': 12.77}, {'connected_gene': 'RASGEF1A', 'score': 6.32}, {'connected_gene': 'PIR60596', 'score': 0.77}, {'connected_gene': 'GC10M043121', 'score': 0.34}]
chr10	GH10I043056	43056442	43058441	0.58	[{'connected_gene': 'CSGALNACT2', 'score': 18.03}, {'connected_gene': 'RET', 'score': 5.82}, {'connected_gene': 'GC10M043057', 'score': 0.77}, {'connected_gene': 'MIR5100', 'score': 0.22}]
chr10	GH10I043086	43086364	43087440	0.51	[{'connected_gene': 'CSGALNACT2', 'score': 20.51}, {'connected_gene': 'RET', 'score': 0.44}, {'connected_gene': 'PIR60596', 'score': 0.39}]
chr10	GH10I043109	43109913	43111660	0.89	[{'connected_gene': 'CSGALNACT2', 'score': 32.65}, {'connected_gene': 'PIR60596', 'score': 0.44}, {'connected_gene': 'GC10M043121', 'score': 0.37}, {'connected_gene': 'RET', 'score': 0.29}]
chr10	GH10I043128	43128664	43130122	1.18	[{'connected_gene': 'CSGALNACT2', 'score': 49.03}, {'connected_gene': 'GC10M043121', 'score': 0.77}, {'connected_gene': 'ENSG00000273008', 'score': 0.44}, {'connected_gene': 'RET', 'score': 0.23}]
chr10	GH10I043225	43225627	43226462	0.52	[{'connected_gene': 'CSGALNACT2', 'score': 50.29}, {'connected_gene': 'LOC441666', 'score': 10.53}, {'connected_gene': 'RASGEF1A', 'score': 10.37}, {'connected_gene': 'ZNF32-AS2', 'score': 9.88}, {'connected_gene': 'GC10P043154', 'score': 0.19}, {'connected_gene': 'GC10P043152', 'score': 0.19}, {'connected_gene': 'GC10P043153', 'score': 0.19}]
chr10	GH10I043120	43120301	43122682	1.31	[{'connected_gene': 'CSGALNACT2', 'score': 63.45}, {'connected_gene': 'HNRNPF', 'score': 4.22}, {'connected_gene': 'GC10M043121', 'score': 0.77}, {'connected_gene': 'PIR60596', 'score': 0.34}, {'connected_gene': 'RET', 'score': 0.26}]
chr10	GH10I043136	43136907	43141233	2.52	[{'connected_gene': 'CSGALNACT2', 'score': 640.45}, {'connected_gene': 'ENSG00000273008', 'score': 550.77}, {'connected_gene': 'HNRNPF', 'score': 16.5}, {'connected_gene': 'RASGEF1A', 'score': 9.76}, {'connected_gene': 'GC10P043154', 'score': 0.39}]
chr10	GH10I043304	43304401	43305400	1.08	[{'connected_gene': 'CSGALNACT2', 'score': 9.04}, {'connected_gene': 'HNRNPF', 'score': 7.07}, {'connected_gene': 'LOC105378271', 'score': 0.39}, {'connected_gene': 'RASGEF1A', 'score': 0.28}]
chr10	GH10I043286	43286588	43288606	1.29	[{'connected_gene': 'CSGALNACT2', 'score': 11.16}, {'connected_gene': 'RASGEF1A', 'score': 0.34}, {'connected_gene': 'LOC105378271', 'score': 0.29}]
chr10	GH10I043156	43156498	43157820	0.49	[{'connected_gene': 'CSGALNACT2', 'score': 66.92}, {'connected_gene': 'RASGEF1A', 'score': 9.79}, {'connected_gene': 'GC10P043154', 'score': 0.44}, {'connected_gene': 'GC10P043152', 'score': 0.44}, {'connected_gene': 'GC10P043153', 'score': 0.44}]
chr10	GH10I043179	43179050	43181807	0.38	[{'connected_gene': 'CSGALNACT2', 'score': 66.84}, {'connected_gene': 'RASGEF1A', 'score': 9.94}, {'connected_gene': 'GC10P043154', 'score': 0.31}, {'connected_gene': 'GC10P043152', 'score': 0.31}, {'connected_gene': 'GC10P043153', 'score': 0.31}]
chr10	GH10I043168	43168498	43173731	0.54	[{'connected_gene': 'CSGALNACT2', 'score': 80.55}, {'connected_gene': 'RASGEF1A', 'score': 9.92}, {'connected_gene': 'GC10P043154', 'score': 0.37}, {'connected_gene': 'GC10P043152', 'score': 0.37}, {'connected_gene': 'GC10P043153', 'score': 0.37}]
chr10	GH10I043173	43173984	43176107	0.67	[{'connected_gene': 'CSGALNACT2', 'score': 19.61}, {'connected_gene': 'RASGEF1A', 'score': 9.93}, {'connected_gene': 'GC10P043154', 'score': 0.34}, {'connected_gene': 'GC10P043152', 'score': 0.34}, {'connected_gene': 'GC10P043153', 'score': 0.34}]
chr10	GH10I043159	43159802	43161937	0.96	[{'connected_gene': 'CSGALNACT2', 'score': 42.43}, {'connected_gene': 'GC10P043154', 'score': 0.44}, {'connected_gene': 'GC10P043152', 'score': 0.44}, {'connected_gene': 'GC10P043153', 'score': 0.44}, {'connected_gene': 'RASGEF1A', 'score': 0.14}]
chr10	GH10I043154	43154737	43156180	0.2	[{'connected_gene': 'CSGALNACT2', 'score': 8.42}, {'connected_gene': 'GC10P043154', 'score': 0.77}, {'connected_gene': 'GC10P043152', 'score': 0.77}, {'connected_gene': 'GC10P043153', 'score': 0.77}, {'connected_gene': 'RASGEF1A', 'score': 0.14}]
chr10	GH10I043166	43166693	43166842	0.66	[{'connected_gene': 'CSGALNACT2', 'score': 12.58}, {'connected_gene': 'GC10P043152', 'score': 0.39}, {'connected_gene': 'GC10P043153', 'score': 0.39}, {'connected_gene': 'GC10P043154', 'score': 0.37}, {'connected_gene': 'RASGEF1A', 'score': 0.15}]
chr10	GH10I043167	43167001	43167400	0.58	[{'connected_gene': 'CSGALNACT2', 'score': 12.58}, {'connected_gene': 'GC10P043154', 'score': 0.37}, {'connected_gene': 'GC10P043152', 'score': 0.37}, {'connected_gene': 'GC10P043153', 'score': 0.37}, {'connected_gene': 'RASGEF1A', 'score': 0.15}]
chr10	GH10I043201	43201743	43204485	1.35	[{'connected_gene': 'CSGALNACT2', 'score': 76.1}, {'connected_gene': 'GC10P043154', 'score': 0.23}, {'connected_gene': 'GC10P043152', 'score': 0.23}, {'connected_gene': 'GC10P043153', 'score': 0.23}, {'connected_gene': 'RASGEF1A', 'score': 0.21}]
chr10	GH10I043190	43190498	43191381	0.38	[{'connected_gene': 'CSGALNACT2', 'score': 66.81}, {'connected_gene': 'ZNF37BP', 'score': 14.37}, {'connected_gene': 'ENSG00000273008', 'score': 14.12}, {'connected_gene': 'ZNF32-AS2', 'score': 12.66}, {'connected_gene': 'ZNF32-AS1', 'score': 12.29}, {'connected_gene': 'GC10P043152', 'score': 0.28}, {'connected_gene': 'GC10P043154', 'score': 0.28}, {'connected_gene': 'GC10P043153', 'score': 0.28}, {'connected_gene': 'RASGEF1A', 'score': 0.18}]
chr10	GH10I043229	43229173	43232265	1.45	[{'connected_gene': 'RASGEF1A', 'score': 550.28}, {'connected_gene': 'CSGALNACT2', 'score': 48.99}, {'connected_gene': 'ZNF37BP', 'score': 14.36}, {'connected_gene': 'ENSG00000273008', 'score': 14.05}, {'connected_gene': 'ZNF32-AS2', 'score': 12.66}, {'connected_gene': 'ZNF32-AS1', 'score': 12.29}, {'connected_gene': 'GC10P043152', 'score': 0.18}, {'connected_gene': 'GC10P043154', 'score': 0.18}, {'connected_gene': 'GC10P043153', 'score': 0.18}]
chr10	GH10I043265	43265853	43266122	0.93	[{'connected_gene': 'RASGEF1A', 'score': 560.88}, {'connected_gene': 'CSGALNACT2', 'score': 14.04}, {'connected_gene': 'GC10P043152', 'score': 0.14}, {'connected_gene': 'GC10P043153', 'score': 0.14}]
chr10	GH10I043604	43604934	43605411	0.31	[{'connected_gene': 'ZNF485', 'score': 550.77}, {'connected_gene': 'CAP1P2', 'score': 550.77}, {'connected_gene': 'ZNF239', 'score': 6.79}, {'connected_gene': 'ENSG00000229116', 'score': 5.98}, {'connected_gene': 'CSGALNACT2', 'score': 2.1}, {'connected_gene': 'GC10M043601', 'score': 0.15}]
chr10	GH10I044081	44081855	44082175	0.22	[{'connected_gene': 'C10orf25', 'score': 4.57}, {'connected_gene': 'CSGALNACT2', 'score': 4.57}, {'connected_gene': 'PIR37397', 'score': 0.1}, {'connected_gene': 'ENSG00000237590', 'score': 0.1}]
chr10	GH10I043416	43416508	43422578	2.07	[{'connected_gene': 'LOC105378272', 'score': 566.76}, {'connected_gene': 'GC10P043423', 'score': 550.77}, {'connected_gene': 'BMS1', 'score': 25.25}, {'connected_gene': 'ZNF32-AS2', 'score': 13.27}, {'connected_gene': 'EIF3LP2', 'score': 11.15}, {'connected_gene': 'ZNF33B', 'score': 9.86}, {'connected_gene': 'ZNF239', 'score': 4.36}, {'connected_gene': 'ENSG00000259869', 'score': 4.1}, {'connected_gene': 'HNRNPF', 'score': 1.46}, {'connected_gene': 'CSGALNACT2', 'score': 1.4}, {'connected_gene': 'GC10M043420', 'score': 0.77}, {'connected_gene': 'SNORD3J', 'score': 0.77}]
chr10	GH10I043322	43322314	43323654	1.05	[{'connected_gene': 'LOC105378270', 'score': 550.77}, {'connected_gene': 'ENSG00000224265', 'score': 550.77}, {'connected_gene': 'LOC105378272', 'score': 8.68}, {'connected_gene': 'CSGALNACT2', 'score': 5.31}, {'connected_gene': 'LOC105378271', 'score': 0.77}]
chr10	GH10I042815	42815953	42818182	0.38	[{'connected_gene': 'PIR61313', 'score': 550.77}, {'connected_gene': 'LINC00839', 'score': 7.08}, {'connected_gene': 'ENSG00000259869', 'score': 6.44}, {'connected_gene': 'CSGALNACT2', 'score': 4.56}, {'connected_gene': 'GC10M042762', 'score': 0.34}, {'connected_gene': 'BMS1', 'score': 0.29}]
chr10	GH10I043126	43126601	43127400	0.72	[{'connected_gene': 'GC10M043121', 'score': 550.77}, {'connected_gene': 'CSGALNACT2', 'score': 52.66}, {'connected_gene': 'ENSG00000273008', 'score': 0.39}, {'connected_gene': 'RET', 'score': 0.25}]
chr10	GH10I043151	43151601	43151800	0.51	[{'connected_gene': 'GC10P043154', 'score': 550.77}, {'connected_gene': 'GC10P043152', 'score': 550.77}, {'connected_gene': 'GC10P043153', 'score': 550.77}, {'connected_gene': 'CSGALNACT2', 'score': 0.39}]