PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000259456	[[100689072, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700473], [100707049, 100707138]]	[[100689665, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700418]]
NM_197978	[[100689072, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700675]]	[[100689665, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700418]]
NM_018437	[[100689072, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700473], [100707049, 100707197]]	[[100689665, 100689760], [100692316, 100693503], [100698452, 100698546], [100700339, 100700418]]

Promoter

Chrom	Start	End	Description
chr9	100692863	100692880	CAGE_peak_8_at_HEMGN_5end
chr9	100692909	100692919	CAGE_peak_5_at_HEMGN_5end
chr9	100700439	100700486	CAGE_peak_1_at_HEMGN_5end
chr9	100700492	100700503	CAGE_peak_2_at_HEMGN_5end
chr9	100700640	100700651	CAGE_peak_3_at_HEMGN_5end
chr9	100707116	100707140	CAGE_peak_4_at_HEMGN_5end
chr9	100707149	100707156	CAGE_peak_11_at_HEMGN_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I098070	98070871	98076600	1.29	[{'connected_gene': 'TRIM14', 'score': 20.43}, {'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'RNU6-918P', 'score': 11.46}, {'connected_gene': 'CORO2A', 'score': 11.43}, {'connected_gene': 'TSTD2', 'score': 10.7}, {'connected_gene': 'HEMGN', 'score': 10.56}, {'connected_gene': 'NANS', 'score': 9.03}, {'connected_gene': 'PIR35853', 'score': 0.39}, {'connected_gene': 'GC09M098254', 'score': 0.39}, {'connected_gene': 'GC09M098251', 'score': 0.39}]
chr9	GH09I098117	98117444	98123006	2.54	[{'connected_gene': 'TRIM14', 'score': 559.71}, {'connected_gene': 'NCBP1', 'score': 56.4}, {'connected_gene': 'ZNF322P1', 'score': 38.92}, {'connected_gene': 'TSTD2', 'score': 38.4}, {'connected_gene': 'ENSG00000254633', 'score': 26.39}, {'connected_gene': 'CORO2A', 'score': 22.74}, {'connected_gene': 'ANKS6', 'score': 21.53}, {'connected_gene': 'CCDC180', 'score': 18.62}, {'connected_gene': 'LOC105376171', 'score': 12.1}, {'connected_gene': 'XPA', 'score': 11.9}, {'connected_gene': 'TBC1D2', 'score': 10.26}, {'connected_gene': 'TRMO', 'score': 5.09}, {'connected_gene': 'FOXE1', 'score': 5.03}, {'connected_gene': 'HEMGN', 'score': 1.26}, {'connected_gene': 'PIR36587', 'score': 0.39}]
chr9	GH09I097501	97501151	97505818	2.49	[{'connected_gene': 'TMOD1', 'score': 555.57}, {'connected_gene': 'HEMGN', 'score': 6.55}, {'connected_gene': 'VN1R51P', 'score': 6.23}, {'connected_gene': 'ANP32B', 'score': 3.36}, {'connected_gene': 'LOC105376168', 'score': 0.39}]
chr9	GH09I097978	97978484	97979452	0.49	[{'connected_gene': 'HEMGN', 'score': 11.94}, {'connected_gene': 'TRIM14', 'score': 4.6}, {'connected_gene': 'ANP32B', 'score': 0.77}, {'connected_gene': 'GC09P097960', 'score': 0.37}, {'connected_gene': 'PIR49291', 'score': 0.37}]
chr9	GH09I097932	97932895	97944494	1.67	[{'connected_gene': 'HEMGN', 'score': 550.44}, {'connected_gene': 'ENSG00000236896', 'score': 22.76}, {'connected_gene': 'TRMO', 'score': 21.52}, {'connected_gene': 'ANP32B', 'score': 12.13}, {'connected_gene': 'ANKS6', 'score': 4.95}, {'connected_gene': 'FOXE1', 'score': 4.64}]
chr9	GH09I097944	97944842	97944901	1.26	[{'connected_gene': 'HEMGN', 'score': 550.77}, {'connected_gene': 'TRMO', 'score': 0.34}]
chr9	GH09I097970	97970179	97970328	0.4	[{'connected_gene': 'HEMGN', 'score': 12.6}, {'connected_gene': 'RNU6-918P', 'score': 11.23}, {'connected_gene': 'ANP32B', 'score': 0.39}, {'connected_gene': 'GC09P097960', 'score': 0.39}, {'connected_gene': 'PIR49291', 'score': 0.39}]
chr9	GH09I097971	97971778	97972446	0.2	[{'connected_gene': 'HEMGN', 'score': 12.78}, {'connected_gene': 'RNU6-918P', 'score': 12.02}, {'connected_gene': 'ANP32B', 'score': 0.39}, {'connected_gene': 'GC09P097960', 'score': 0.39}, {'connected_gene': 'PIR49291', 'score': 0.39}]
chr9	GH09I097969	97969720	97969939	0.31	[{'connected_gene': 'HEMGN', 'score': 12.63}, {'connected_gene': 'RNU6-918P', 'score': 11.23}, {'connected_gene': 'GC09P097960', 'score': 0.44}, {'connected_gene': 'PIR49291', 'score': 0.44}, {'connected_gene': 'ANP32B', 'score': 0.39}]
chr9	GH09I098076	98076619	98076828	0.4	[{'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'TRIM14', 'score': 11.56}, {'connected_gene': 'RNU6-918P', 'score': 11.46}, {'connected_gene': 'CORO2A', 'score': 11.43}, {'connected_gene': 'HEMGN', 'score': 10.55}, {'connected_gene': 'GC09M098254', 'score': 0.44}, {'connected_gene': 'GC09M098251', 'score': 0.44}, {'connected_gene': 'PIR35853', 'score': 0.44}, {'connected_gene': 'NANS', 'score': 0.34}]
chr9	GH09I098078	98078833	98079216	0.75	[{'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'TRIM14', 'score': 11.56}, {'connected_gene': 'RNU6-918P', 'score': 11.45}, {'connected_gene': 'CORO2A', 'score': 11.44}, {'connected_gene': 'HEMGN', 'score': 10.55}, {'connected_gene': 'TRMO', 'score': 1.75}, {'connected_gene': 'PIR35853', 'score': 0.44}, {'connected_gene': 'GC09M098254', 'score': 0.44}, {'connected_gene': 'GC09M098251', 'score': 0.44}, {'connected_gene': 'NANS', 'score': 0.34}]
chr9	GH09I097909	97909895	97912672	0.51	[{'connected_gene': 'TRMO', 'score': 19.86}, {'connected_gene': 'HEMGN', 'score': 11.18}, {'connected_gene': 'FOXE1', 'score': 10.71}, {'connected_gene': 'TBC1D2', 'score': 10.54}, {'connected_gene': 'GC09P097916', 'score': 0.77}, {'connected_gene': 'GC09P097870', 'score': 0.26}]
chr9	GH09I097918	97918311	97924164	2.6	[{'connected_gene': 'TRMO', 'score': 591.45}, {'connected_gene': 'NCBP1', 'score': 52.35}, {'connected_gene': 'TSTD2', 'score': 39.53}, {'connected_gene': 'ZNF322P1', 'score': 24.45}, {'connected_gene': 'NUTM2G', 'score': 23.16}, {'connected_gene': 'MFSD14C', 'score': 22.18}, {'connected_gene': 'ZNF782', 'score': 21.82}, {'connected_gene': 'ANP32B', 'score': 12.67}, {'connected_gene': 'ENSG00000236896', 'score': 12.67}, {'connected_gene': 'HEMGN', 'score': 12.64}, {'connected_gene': 'RNU6-918P', 'score': 12.0}, {'connected_gene': 'ENSG00000254633', 'score': 12.0}, {'connected_gene': 'XPA', 'score': 11.72}, {'connected_gene': 'TRIM14', 'score': 1.76}, {'connected_gene': 'ENSG00000201830', 'score': 0.44}]
chr9	GH09I097929	97929371	97932503	0.58	[{'connected_gene': 'TRMO', 'score': 21.05}, {'connected_gene': 'RNU6-918P', 'score': 12.01}, {'connected_gene': 'ANP32B', 'score': 11.86}, {'connected_gene': 'ENSG00000236896', 'score': 11.85}, {'connected_gene': 'TBC1D2', 'score': 10.41}, {'connected_gene': 'HEMGN', 'score': 0.39}]
chr9	GH09I097925	97925324	97926417	0.52	[{'connected_gene': 'TRMO', 'score': 21.42}, {'connected_gene': 'ANP32B', 'score': 12.5}, {'connected_gene': 'ENSG00000236896', 'score': 12.49}, {'connected_gene': 'RNU6-918P', 'score': 12.01}, {'connected_gene': 'TRIM14', 'score': 10.52}, {'connected_gene': 'TBC1D2', 'score': 10.41}, {'connected_gene': 'NANS', 'score': 6.36}, {'connected_gene': 'HEMGN', 'score': 0.37}]
chr9	GH09I097924	97924519	97924865	0.72	[{'connected_gene': 'ANP32B', 'score': 12.5}, {'connected_gene': 'ENSG00000236896', 'score': 12.49}, {'connected_gene': 'TRIM14', 'score': 10.52}, {'connected_gene': 'TRMO', 'score': 6.8}, {'connected_gene': 'HEMGN', 'score': 0.34}]
chr9	GH09I097954	97954619	97955407	1.05	[{'connected_gene': 'ANP32B', 'score': 12.65}, {'connected_gene': 'ENSG00000236896', 'score': 12.63}, {'connected_gene': 'GC09P097960', 'score': 0.77}, {'connected_gene': 'PIR49291', 'score': 0.77}, {'connected_gene': 'HEMGN', 'score': 0.39}]
chr9	GH09I098009	98009352	98011288	0.77	[{'connected_gene': 'ENSG00000236896', 'score': 12.1}, {'connected_gene': 'ANP32B', 'score': 12.07}, {'connected_gene': 'HEMGN', 'score': 11.04}, {'connected_gene': 'TBC1D2', 'score': 9.78}, {'connected_gene': 'TRIM14', 'score': 9.7}, {'connected_gene': 'GC09P098033', 'score': 0.34}]
chr9	GH09I097958	97958620	97959616	0.93	[{'connected_gene': 'GC09P097960', 'score': 550.77}, {'connected_gene': 'PIR49291', 'score': 550.77}, {'connected_gene': 'ANP32B', 'score': 12.68}, {'connected_gene': 'ENSG00000236896', 'score': 12.65}, {'connected_gene': 'TRMO', 'score': 6.14}, {'connected_gene': 'HEMGN', 'score': 0.39}]