PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000315251	[[53846361, 53852222], [53852964, 53853067], [53853558, 53853701], [53854500, 53854635], [53855673, 53855803], [53856517, 53856669], [53857332, 53858094], [53874955, 53875026], [53880109, 53880417]]	[[53851803, 53852222], [53852964, 53853067], [53853558, 53853701], [53854500, 53854635], [53855673, 53855803], [53856517, 53856669], [53857332, 53858035]]
ENST00000481668	[[53857570, 53858094], [53874955, 53875026], [53878608, 53878644]]	[[53857570, 53858035]]
ENST00000467802	[[53857657, 53858094], [53874955, 53875026], [53878739, 53878796]]	[[53857657, 53858035]]
NM_018397	[[53850323, 53852222], [53852964, 53853067], [53853558, 53853701], [53854500, 53854635], [53855673, 53855803], [53856517, 53856669], [53857332, 53858094], [53874955, 53875026], [53880109, 53880420]]	[[53851803, 53852222], [53852964, 53853067], [53853558, 53853701], [53854500, 53854635], [53855673, 53855803], [53856517, 53856669], [53857332, 53858035]]

Promoter

Chrom	Start	End	Description
chr3	53878786	53878811	CAGE_peak_4_at_CHDH_5end
chr3	53878829	53878837	CAGE_peak_8_at_CHDH_5end
chr3	53880345	53880378	CAGE_peak_2_at_CHDH_5end
chr3	53880401	53880474	CAGE_peak_1_at_CHDH_5end
chr3	53880477	53880491	CAGE_peak_3_at_CHDH_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I053833	53833092	53834037	0.31	[{'connected_gene': 'ACTR8', 'score': 10.51}, {'connected_gene': 'CHDH', 'score': 0.39}, {'connected_gene': 'ENSG00000271916', 'score': 0.28}]
chr3	GH03I053830	53830810	53831596	0.2	[{'connected_gene': 'ACTR8', 'score': 10.49}, {'connected_gene': 'CHDH', 'score': 0.37}, {'connected_gene': 'ENSG00000271916', 'score': 0.29}]
chr3	GH03I053776	53776932	53777918	0.38	[{'connected_gene': 'IL17RB', 'score': 17.78}, {'connected_gene': 'CHDH', 'score': 10.6}, {'connected_gene': 'GC03P053782', 'score': 0.44}, {'connected_gene': 'PIR47826', 'score': 0.15}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053837	53837939	53838997	0.2	[{'connected_gene': 'IL17RB', 'score': 24.38}, {'connected_gene': 'CHDH', 'score': 0.44}, {'connected_gene': 'ENSG00000271916', 'score': 0.26}]
chr3	GH03I053820	53820900	53822443	0.51	[{'connected_gene': 'IL17RB', 'score': 26.69}, {'connected_gene': 'CHDH', 'score': 11.98}, {'connected_gene': 'ENSG00000271916', 'score': 0.34}]
chr3	GH03I053841	53841135	53847118	2.65	[{'connected_gene': 'IL17RB', 'score': 580.34}, {'connected_gene': 'CHDH', 'score': 557.04}, {'connected_gene': 'ENSG00000271916', 'score': 0.25}]
chr3	GH03I053825	53825930	53826175	0.24	[{'connected_gene': 'CHDH', 'score': 3.97}, {'connected_gene': 'CACNA1D', 'score': 2.72}, {'connected_gene': 'ENSG00000271916', 'score': 0.31}]
chr3	GH03I053795	53795314	53795403	0.2	[{'connected_gene': 'CHDH', 'score': 11.32}, {'connected_gene': 'IL17RB', 'score': 11.32}, {'connected_gene': 'ENSG00000271916', 'score': 6.49}, {'connected_gene': 'GC03P053782', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053794	53794666	53795280	0.43	[{'connected_gene': 'CHDH', 'score': 11.32}, {'connected_gene': 'IL17RB', 'score': 11.32}, {'connected_gene': 'ENSG00000271916', 'score': 0.77}, {'connected_gene': 'GC03P053782', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053775	53775682	53776865	0.52	[{'connected_gene': 'CHDH', 'score': 10.61}, {'connected_gene': 'IL17RB', 'score': 10.61}, {'connected_gene': 'GC03P053782', 'score': 0.44}, {'connected_gene': 'PIR47826', 'score': 0.15}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053824	53824501	53825447	0.2	[{'connected_gene': 'CHDH', 'score': 11.98}, {'connected_gene': 'IL17RB', 'score': 11.98}, {'connected_gene': 'ENSG00000271916', 'score': 8.0}]
chr3	GH03I053835	53835669	53836593	0.38	[{'connected_gene': 'CHDH', 'score': 0.39}, {'connected_gene': 'ENSG00000271916', 'score': 0.28}]
chr3	GH03I053804	53804145	53808023	1.08	[{'connected_gene': 'ENSG00000271916', 'score': 10.92}, {'connected_gene': 'CHDH', 'score': 5.12}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053809	53809846	53810689	0.31	[{'connected_gene': 'ENSG00000271916', 'score': 0.39}, {'connected_gene': 'CHDH', 'score': 0.28}, {'connected_gene': 'CACNA1D', 'score': 0.04}]