PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000447404	[[125883909, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946577], [126030714, 126030855]]	[[125887875, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946413]]
ENST00000348403	[[125886989, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946577], [125999108, 125999245], [126030714, 126030843]]	[[125887875, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946413]]
ENST00000360998	[[125887317, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125943146, 125943254], [125946410, 125946577], [126030714, 126030855]]	[[125887875, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941467]]
ENST00000407982	[[125887498, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125930467, 125930537], [125932180, 125932325], [125935955, 125936113], [125941285, 125941506], [125946410, 125946577], [126030714, 126030843]]	[[125936052, 125936113], [125941285, 125941506], [125946410, 125946413]]
ENST00000479114	[[125941285, 125941506], [125946410, 125946577], [125974863, 125974987], [125975867, 125976187]]	[[125941285, 125941506], [125946410, 125946413]]
ENST00000530364	[[125871778, 125872032], [125884471, 125884502]]	None
ENST00000478973	[[125871792, 125872032], [125878042, 125878162], [125884471, 125884605], [125890492, 125890537], [125895123, 125895247]]	[[125884600, 125884605], [125890492, 125890537], [125895123, 125895247]]
ENST00000471564	[[125871835, 125872032], [125878207, 125878377], [125890492, 125890537], [125895123, 125895246]]	[[125878291, 125878377], [125890492, 125890537], [125895123, 125895246]]
ENST00000496533	[[125883569, 125883827], [125884471, 125884605], [125890492, 125890537], [125895123, 125895247], [125898319, 125898415]]	[[125884600, 125884605], [125890492, 125890537], [125895123, 125895247], [125898319, 125898415]]
ENST00000492885	[[125898085, 125898460], [125898659, 125898782]]	None
NM_018387	[[125883898, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946577], [125999108, 125999245], [126030714, 126030843]]	[[125887875, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125946410, 125946413]]
NR_033234	[[125883898, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125930467, 125930537], [125932180, 125932325], [125935955, 125936113], [125941285, 125941506], [125946410, 125946577], [126030714, 126030843]]	None
NM_001171137	[[125883898, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941506], [125943146, 125943254], [125946410, 125946577], [126030714, 126030855]]	[[125887875, 125887952], [125890492, 125890537], [125895123, 125895247], [125898319, 125898460], [125898659, 125898794], [125901807, 125901966], [125909133, 125909333], [125910056, 125910149], [125920290, 125920402], [125920610, 125920708], [125921374, 125921486], [125922645, 125922741], [125923255, 125923347], [125932180, 125932325], [125935955, 125936121], [125941285, 125941467]]

Promoter

Chrom	Start	End	Description
chr9	125898916	125898941	CAGE_peak_14_at_STRBP_5end
chr9	125946512	125946529	CAGE_peak_4_at_STRBP_5end
chr9	126030793	126030806	CAGE_peak_2_at_STRBP_5end
chr9	126030817	126030906	CAGE_peak_1_at_STRBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I123173	123173192	123177391	0.96	[{'connected_gene': 'MIR600HG', 'score': 10.66}, {'connected_gene': 'MIR600', 'score': 10.65}, {'connected_gene': 'STRBP', 'score': 10.53}, {'connected_gene': 'RABGAP1', 'score': 8.53}, {'connected_gene': 'GC09M123183', 'score': 0.22}, {'connected_gene': 'PIR44660', 'score': 0.22}]
chr9	GH09I123217	123217262	123217371	0.65	[{'connected_gene': 'MIR600HG', 'score': 10.73}, {'connected_gene': 'MIR600', 'score': 10.73}, {'connected_gene': 'STRBP', 'score': 10.7}, {'connected_gene': 'GC09M123183', 'score': 0.15}, {'connected_gene': 'PIR44660', 'score': 0.15}]
chr9	GH09I123251	123251442	123251611	0.46	[{'connected_gene': 'MIR600HG', 'score': 10.57}, {'connected_gene': 'MIR600', 'score': 10.57}, {'connected_gene': 'STRBP', 'score': 0.37}, {'connected_gene': 'GC09M123183', 'score': 0.12}, {'connected_gene': 'PIR44660', 'score': 0.12}]
chr9	GH09I123364	123364189	123364888	1.05	[{'connected_gene': 'MIR601', 'score': 12.39}, {'connected_gene': 'DENND1A', 'score': 12.14}, {'connected_gene': 'MIR600', 'score': 10.82}, {'connected_gene': 'MIR600HG', 'score': 10.82}, {'connected_gene': 'STRBP', 'score': 10.57}, {'connected_gene': 'CRB2', 'score': 8.46}, {'connected_gene': 'GC09P123401', 'score': 0.28}]
chr9	GH09I123362	123362180	123362828	0.38	[{'connected_gene': 'MIR601', 'score': 12.38}, {'connected_gene': 'DENND1A', 'score': 12.14}, {'connected_gene': 'MIR600', 'score': 10.82}, {'connected_gene': 'MIR600HG', 'score': 10.82}, {'connected_gene': 'STRBP', 'score': 10.58}, {'connected_gene': 'CRB2', 'score': 0.44}, {'connected_gene': 'GC09P123401', 'score': 0.28}]
chr9	GH09I123367	123367003	123371370	0.56	[{'connected_gene': 'MIR601', 'score': 12.63}, {'connected_gene': 'DENND1A', 'score': 12.37}, {'connected_gene': 'MIR600', 'score': 10.82}, {'connected_gene': 'MIR600HG', 'score': 10.82}, {'connected_gene': 'STRBP', 'score': 10.56}, {'connected_gene': 'CRB2', 'score': 5.95}, {'connected_gene': 'GC09P123401', 'score': 0.29}]
chr9	GH09I123371	123371647	123373302	0.6	[{'connected_gene': 'MIR601', 'score': 12.63}, {'connected_gene': 'DENND1A', 'score': 12.37}, {'connected_gene': 'STRBP', 'score': 5.34}, {'connected_gene': 'CRB2', 'score': 4.42}, {'connected_gene': 'GC09P123401', 'score': 0.31}]
chr9	GH09I123391	123391759	123392075	0.31	[{'connected_gene': 'MIR600', 'score': 10.37}, {'connected_gene': 'MIR600HG', 'score': 10.37}, {'connected_gene': 'STRBP', 'score': 10.32}, {'connected_gene': 'GC09P123401', 'score': 0.44}, {'connected_gene': 'CRB2', 'score': 0.28}, {'connected_gene': 'DENND1A', 'score': 0.03}]
chr9	GH09I123337	123337772	123341571	1.39	[{'connected_gene': 'ZBTB26', 'score': 11.53}, {'connected_gene': 'STRBP', 'score': 8.34}, {'connected_gene': 'CRB2', 'score': 0.39}, {'connected_gene': 'LOC105376265', 'score': 0.37}]
chr9	GH09I123304	123304262	123305553	1.38	[{'connected_gene': 'ZBTB26', 'score': 23.28}, {'connected_gene': 'RC3H2', 'score': 11.94}, {'connected_gene': 'STRBP', 'score': 11.27}, {'connected_gene': 'MIR600HG', 'score': 10.71}, {'connected_gene': 'MIR600', 'score': 10.71}, {'connected_gene': 'GC09M123300', 'score': 0.77}, {'connected_gene': 'LOC105376265', 'score': 0.37}]
chr9	GH09I123326	123326040	123328700	1.34	[{'connected_gene': 'ZBTB26', 'score': 15.17}, {'connected_gene': 'RC3H2', 'score': 12.29}, {'connected_gene': 'ZBTB6', 'score': 9.99}, {'connected_gene': 'STRBP', 'score': 8.06}, {'connected_gene': 'LOC105376265', 'score': 0.77}, {'connected_gene': 'CRB2', 'score': 0.31}]
chr9	GH09I123224	123224569	123226723	0.89	[{'connected_gene': 'STRBP', 'score': 11.58}, {'connected_gene': 'MIR600HG', 'score': 11.31}, {'connected_gene': 'MIR600', 'score': 11.31}, {'connected_gene': 'RABGAP1', 'score': 7.84}, {'connected_gene': 'GC09M123183', 'score': 0.14}, {'connected_gene': 'PIR44660', 'score': 0.14}]
chr9	GH09I123333	123333600	123334325	0.52	[{'connected_gene': 'STRBP', 'score': 11.91}, {'connected_gene': 'MIR600HG', 'score': 10.84}, {'connected_gene': 'MIR600', 'score': 10.84}, {'connected_gene': 'LOC105376265', 'score': 0.39}, {'connected_gene': 'CRB2', 'score': 0.34}]
chr9	GH09I123302	123302322	123303438	1.03	[{'connected_gene': 'STRBP', 'score': 11.42}, {'connected_gene': 'MIR600HG', 'score': 10.71}, {'connected_gene': 'MIR600', 'score': 10.71}, {'connected_gene': 'GC09M123300', 'score': 0.77}, {'connected_gene': 'LOC105376265', 'score': 0.37}]
chr9	GH09I123232	123232106	123232901	0.2	[{'connected_gene': 'STRBP', 'score': 11.73}, {'connected_gene': 'MIR600HG', 'score': 11.21}, {'connected_gene': 'MIR600', 'score': 11.21}, {'connected_gene': 'GC09M123183', 'score': 0.14}, {'connected_gene': 'PIR44660', 'score': 0.14}]
chr9	GH09I123342	123342104	123344986	1.5	[{'connected_gene': 'STRBP', 'score': 7.24}, {'connected_gene': 'MIR600HG', 'score': 4.23}, {'connected_gene': 'CRB2', 'score': 0.39}, {'connected_gene': 'LOC105376265', 'score': 0.34}]
chr9	GH09I123239	123239916	123240009	0.44	[{'connected_gene': 'STRBP', 'score': 14.44}, {'connected_gene': 'MIR600', 'score': 10.76}, {'connected_gene': 'MIR600HG', 'score': 10.76}, {'connected_gene': 'OR1L6', 'score': 4.22}, {'connected_gene': 'GPR21', 'score': 2.22}, {'connected_gene': 'RC3H2', 'score': 1.46}, {'connected_gene': 'ZBTB26', 'score': 1.42}, {'connected_gene': 'ZBTB6', 'score': 1.23}, {'connected_gene': 'GC09M123183', 'score': 0.13}, {'connected_gene': 'PIR44660', 'score': 0.13}]
chr9	GH09I123097	123097035	123097069	0.2	[{'connected_gene': 'STRBP', 'score': 10.59}, {'connected_gene': 'MIR600', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.29}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I123098	123097351	123098583	0.2	[{'connected_gene': 'STRBP', 'score': 10.77}, {'connected_gene': 'MIR600', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.29}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I123120	123120956	123121949	0.59	[{'connected_gene': 'STRBP', 'score': 9.88}, {'connected_gene': 'SNORD90', 'score': 9.42}, {'connected_gene': 'RABGAP1', 'score': 6.39}, {'connected_gene': 'GC09M123183', 'score': 0.77}, {'connected_gene': 'PIR44660', 'score': 0.77}]
chr9	GH09I123296	123296232	123298386	0.78	[{'connected_gene': 'STRBP', 'score': 11.96}, {'connected_gene': 'ZBTB26', 'score': 11.53}, {'connected_gene': 'MIR600HG', 'score': 10.33}, {'connected_gene': 'MIR600', 'score': 10.33}, {'connected_gene': 'RABGAP1', 'score': 6.66}, {'connected_gene': 'GC09M123300', 'score': 0.77}]
chr9	GH09I123233	123233648	123236184	0.65	[{'connected_gene': 'STRBP', 'score': 12.13}, {'connected_gene': 'CRB2', 'score': 11.52}, {'connected_gene': 'MIR600HG', 'score': 11.21}, {'connected_gene': 'MIR600', 'score': 11.21}, {'connected_gene': 'RABGAP1', 'score': 5.04}, {'connected_gene': 'GC09M123183', 'score': 0.13}, {'connected_gene': 'PIR44660', 'score': 0.13}]
chr9	GH09I123345	123345429	123346422	0.85	[{'connected_gene': 'STRBP', 'score': 6.67}, {'connected_gene': 'CRB2', 'score': 0.44}, {'connected_gene': 'LOC105376265', 'score': 0.34}]
chr9	GH09I123095	123095001	123096485	0.75	[{'connected_gene': 'STRBP', 'score': 10.59}, {'connected_gene': 'RABGAP1', 'score': 8.0}, {'connected_gene': 'MIR600', 'score': 0.37}, {'connected_gene': 'LOC100422501', 'score': 0.29}]
chr9	GH09I123706	123706007	123706099	0.24	[{'connected_gene': 'STRBP', 'score': 1.69}, {'connected_gene': 'ENSG00000230826', 'score': 0.29}, {'connected_gene': 'LOC105376266', 'score': 0.12}, {'connected_gene': 'DENND1A', 'score': 0.07}]
chr9	GH09I123335	123335071	123337114	1.17	[{'connected_gene': 'STRBP', 'score': 5.86}, {'connected_gene': 'LOC105376265', 'score': 0.39}, {'connected_gene': 'CRB2', 'score': 0.37}]
chr9	GH09I123267	123267600	123269438	1.97	[{'connected_gene': 'STRBP', 'score': 550.77}, {'connected_gene': 'GC09M123183', 'score': 0.11}, {'connected_gene': 'PIR44660', 'score': 0.11}]
chr9	GH09I123131	123131362	123131491	0.49	[{'connected_gene': 'STRBP', 'score': 10.44}, {'connected_gene': 'GC09M123183', 'score': 0.39}, {'connected_gene': 'PIR44660', 'score': 0.39}]
chr9	GH09I122826	122826067	122829236	2.26	[{'connected_gene': 'PDCL', 'score': 550.77}, {'connected_gene': 'MORN5', 'score': 5.03}, {'connected_gene': 'STRBP', 'score': 4.21}, {'connected_gene': 'GC09M122816', 'score': 0.39}]
chr9	GH09I123379	123379007	123384885	0.46	[{'connected_gene': 'CRB2', 'score': 20.94}, {'connected_gene': 'MIR601', 'score': 12.68}, {'connected_gene': 'DENND1A', 'score': 12.37}, {'connected_gene': 'MIR600HG', 'score': 10.71}, {'connected_gene': 'MIR600', 'score': 10.71}, {'connected_gene': 'STRBP', 'score': 10.25}, {'connected_gene': 'GC09P123401', 'score': 0.37}]
chr9	GH09I123375	123375438	123376786	0.96	[{'connected_gene': 'CRB2', 'score': 19.55}, {'connected_gene': 'MIR601', 'score': 12.65}, {'connected_gene': 'DENND1A', 'score': 12.37}, {'connected_gene': 'STRBP', 'score': 4.63}, {'connected_gene': 'GC09P123401', 'score': 0.31}]
chr9	GH09I123355	123355425	123361615	1.88	[{'connected_gene': 'CRB2', 'score': 555.91}, {'connected_gene': 'STRBP', 'score': 15.93}, {'connected_gene': 'MIR601', 'score': 12.38}, {'connected_gene': 'DENND1A', 'score': 12.14}, {'connected_gene': 'MIR600HG', 'score': 10.82}, {'connected_gene': 'MIR600', 'score': 10.82}, {'connected_gene': 'GC09P123401', 'score': 0.26}]
chr9	GH09I123352	123352350	123353649	0.31	[{'connected_gene': 'CRB2', 'score': 555.99}, {'connected_gene': 'STRBP', 'score': 6.27}, {'connected_gene': 'LOC105376265', 'score': 0.29}]
chr9	GH09I123353	123353831	123354633	1.46	[{'connected_gene': 'CRB2', 'score': 550.77}, {'connected_gene': 'STRBP', 'score': 4.48}, {'connected_gene': 'LOC105376265', 'score': 0.29}]
chr9	GH09I123171	123171921	123171934	0.22	[{'connected_gene': 'OR1L4', 'score': 9.03}, {'connected_gene': 'OR1L6', 'score': 4.08}, {'connected_gene': 'GPR21', 'score': 2.77}, {'connected_gene': 'GC09M123183', 'score': 0.23}, {'connected_gene': 'PIR44660', 'score': 0.23}, {'connected_gene': 'STRBP', 'score': 0.15}]
chr9	GH09I123108	123108492	123112901	0.85	[{'connected_gene': 'PIR57287', 'score': 550.77}, {'connected_gene': 'PIR45965', 'score': 550.77}, {'connected_gene': 'MIR600', 'score': 550.77}, {'connected_gene': 'GC09M123179', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 7.84}, {'connected_gene': 'GC09M123184', 'score': 0.77}, {'connected_gene': 'PIR33429', 'score': 0.77}, {'connected_gene': 'MIR600HG', 'score': 0.77}, {'connected_gene': 'LOC100422501', 'score': 0.25}, {'connected_gene': 'STRBP', 'score': 0.1}]
chr9	GH09I123366	123366262	123366391	0.63	[{'connected_gene': 'ENSG00000261094', 'score': 18.28}, {'connected_gene': 'ZBTB26', 'score': 13.3}, {'connected_gene': 'MIR601', 'score': 12.39}, {'connected_gene': 'DENND1A', 'score': 12.14}, {'connected_gene': 'MIR600', 'score': 10.82}, {'connected_gene': 'MIR600HG', 'score': 10.82}, {'connected_gene': 'STRBP', 'score': 10.57}, {'connected_gene': 'CRB2', 'score': 0.39}, {'connected_gene': 'GC09P123401', 'score': 0.29}]
chr9	GH09I123299	123299310	123301300	0.83	[{'connected_gene': 'GC09M123300', 'score': 550.77}, {'connected_gene': 'ZBTB26', 'score': 11.65}, {'connected_gene': 'STRBP', 'score': 11.57}, {'connected_gene': 'ENSG00000261094', 'score': 11.51}, {'connected_gene': 'MIR600HG', 'score': 10.33}, {'connected_gene': 'MIR600', 'score': 10.33}]
chr9	GH09I123121	123120727	123120931	0.31	[{'connected_gene': 'GC09M123183', 'score': 550.77}, {'connected_gene': 'PIR44660', 'score': 550.77}, {'connected_gene': 'STRBP', 'score': 9.88}, {'connected_gene': 'SNORD90', 'score': 9.42}]