PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000509657	[[164415593, 164415711], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164440872]]	[[164415593, 164415711], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164440666]]
ENST00000358572	[[164415612, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164441691]]	[[164415953, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164440666]]
ENST00000513272	[[164415818, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164438585, 164438628], [164440485, 164440871]]	[[164415953, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164438585, 164438613]]
ENST00000511562	[[164415819, 164415988], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613]]	None
ENST00000508652	[[164415819, 164415988], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164437254]]	None
ENST00000513134	[[164415839, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164441133, 164441527]]	[[164415953, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164441133, 164441200]]
ENST00000508268	[[164415859, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438711]]	[[164415953, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438632]]
ENST00000506214	[[164433575, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164440615]]	None
ENST00000503148	[[164438223, 164438628], [164440485, 164440710]]	None
NM_018352	[[164415672, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164441691]]	[[164415953, 164415956], [164428184, 164428297], [164433973, 164434011], [164435225, 164435310], [164436464, 164436613], [164438585, 164438628], [164440485, 164440666]]

Promoter

Chrom	Start	End	Description
chr4	164415635	164415669	CAGE_peak_4_at_C4orf43_5end
chr4	164415670	164415690	CAGE_peak_2_at_C4orf43_5end
chr4	164415785	164415848	CAGE_peak_1_at_C4orf43_5end
chr4	164415855	164415866	CAGE_peak_5_at_C4orf43_5end
chr4	164415871	164415899	CAGE_peak_3_at_C4orf43_5end
chr4	164415913	164415917	CAGE_peak_11_at_C4orf43_5end
chr4	164415932	164415934	CAGE_peak_14_at_C4orf43_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I163481	163481769	163483079	0.4	[{'connected_gene': 'TKTL2', 'score': 0.44}, {'connected_gene': 'TMA16', 'score': 0.39}]
chr4	GH04I163543	163543051	163543198	0.26	[{'connected_gene': 'TMA16', 'score': 12.32}, {'connected_gene': 'TKTL2', 'score': 10.7}, {'connected_gene': 'MARCH1', 'score': 2.36}, {'connected_gene': 'NPY5R', 'score': 2.31}, {'connected_gene': 'NPY1R', 'score': 1.94}, {'connected_gene': 'ENSG00000273449', 'score': 0.39}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163484	163484949	163485098	0.65	[{'connected_gene': 'TMA16', 'score': 0.44}, {'connected_gene': 'TKTL2', 'score': 0.39}]
chr4	GH04I163866	163866638	163867678	0.57	[{'connected_gene': 'TMA16', 'score': 12.56}, {'connected_gene': 'GC04M163825', 'score': 0.28}, {'connected_gene': 'YWHAQP4', 'score': 0.2}, {'connected_gene': 'MARCH1', 'score': 0.03}, {'connected_gene': 'GC04M163839', 'score': 0.03}]
chr4	GH04I163493	163493060	163496419	2.35	[{'connected_gene': 'TMA16', 'score': 553.1}, {'connected_gene': 'MARCH1', 'score': 47.28}, {'connected_gene': 'ENSG00000273449', 'score': 8.92}, {'connected_gene': 'TKTL2', 'score': 1.55}]
chr4	GH04I163496	163496801	163497200	0.31	[{'connected_gene': 'TMA16', 'score': 0.77}, {'connected_gene': 'ENSG00000273449', 'score': 0.29}]
chr4	GH04I163550	163550001	163550800	1.39	[{'connected_gene': 'MARCH1', 'score': 19.86}, {'connected_gene': 'TMA16', 'score': 12.37}, {'connected_gene': 'TKTL2', 'score': 10.59}, {'connected_gene': 'ENSG00000273449', 'score': 0.34}, {'connected_gene': 'PIR37872', 'score': 0.07}]
chr4	GH04I163540	163540565	163542395	0.43	[{'connected_gene': 'MARCH1', 'score': 53.23}, {'connected_gene': 'TMA16', 'score': 12.32}, {'connected_gene': 'TKTL2', 'score': 10.7}, {'connected_gene': 'ENSG00000273449', 'score': 0.39}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163535	163535774	163536756	0.51	[{'connected_gene': 'MARCH1', 'score': 47.68}, {'connected_gene': 'TMA16', 'score': 12.28}, {'connected_gene': 'TKTL2', 'score': 10.68}, {'connected_gene': 'ENSG00000273449', 'score': 0.44}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163544	163544201	163545639	1.08	[{'connected_gene': 'MARCH1', 'score': 48.75}, {'connected_gene': 'TMA16', 'score': 12.31}, {'connected_gene': 'TKTL2', 'score': 10.57}, {'connected_gene': 'ENSG00000273449', 'score': 0.37}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163622	163622201	163623200	0.65	[{'connected_gene': 'MARCH1', 'score': 7.75}, {'connected_gene': 'TMA16', 'score': 4.76}, {'connected_gene': 'ENSG00000273449', 'score': 0.16}, {'connected_gene': 'PIR37872', 'score': 0.08}]
chr4	GH04I163528	163528033	163529942	0.2	[{'connected_gene': 'ENSG00000273449', 'score': 550.77}, {'connected_gene': 'MARCH1', 'score': 48.78}, {'connected_gene': 'TKTL2', 'score': 10.87}, {'connected_gene': 'TMA16', 'score': 5.6}]