PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000512921	[[25162284, 25162375], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25278928]]	[[25253962, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25278809]]
ENST00000507794	[[25162293, 25162375], [25199089, 25202498]]	None
ENST00000510415	[[25162262, 25162375], [25163039, 25163309]]	None
ENST00000264864	[[25235596, 25236053], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25280714]]	[[25235785, 25236053], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25278809]]
NM_018323	[[25235652, 25236053], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25280831]]	[[25235785, 25236053], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260658, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25278809]]
NR_144633	[[25235652, 25236053], [25253942, 25254097], [25256686, 25256887], [25258164, 25258296], [25260643, 25260812], [25262145, 25262213], [25265371, 25265471], [25270064, 25270198], [25270765, 25270825], [25278635, 25280831]]	None

Promoter

Chrom	Start	End	Description
chr4	25162194	25162239	CAGE_peak_5_at_PI4K2B_5end
chr4	25162253	25162303	CAGE_peak_3_at_PI4K2B_5end
chr4	25162308	25162350	CAGE_peak_2_at_PI4K2B_5end
chr4	25235625	25235692	CAGE_peak_1_at_PI4K2B_5end
chr4	25235701	25235732	CAGE_peak_4_at_PI4K2B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I025441	25441659	25441768	0.59	[{'connected_gene': 'PI4K2B', 'score': 5.09}, {'connected_gene': 'GC04P025454', 'score': 0.39}, {'connected_gene': 'LOC105374536', 'score': 0.37}]
chr4	GH04I025233	25233178	25236819	2.02	[{'connected_gene': 'PI4K2B', 'score': 556.02}, {'connected_gene': 'LOC105374535', 'score': 550.77}, {'connected_gene': 'ANAPC4', 'score': 34.46}, {'connected_gene': 'DHX15', 'score': 13.86}, {'connected_gene': 'ZCCHC4', 'score': 11.82}, {'connected_gene': 'PIR48003', 'score': 0.44}, {'connected_gene': 'ENSG00000281028', 'score': 0.19}]
chr4	GH04I025158	25158674	25162444	2.07	[{'connected_gene': 'SEPSECS', 'score': 550.77}, {'connected_gene': 'ENSG00000281028', 'score': 550.77}, {'connected_gene': 'SEPSECS-AS1', 'score': 550.77}, {'connected_gene': 'ANAPC4', 'score': 34.59}, {'connected_gene': 'PI4K2B', 'score': 17.55}, {'connected_gene': 'DHX15', 'score': 11.26}, {'connected_gene': 'PIR60918', 'score': 0.28}]
chr4	GH04I025132	25132337	25134007	0.49	[{'connected_gene': 'ANAPC4', 'score': 14.12}, {'connected_gene': 'CCDC149', 'score': 10.26}, {'connected_gene': 'PI4K2B', 'score': 5.23}, {'connected_gene': 'PIR60918', 'score': 0.39}, {'connected_gene': 'SEPSECS', 'score': 0.31}]
chr4	GH04I025153	25153406	25156410	0.79	[{'connected_gene': 'ANAPC4', 'score': 29.43}, {'connected_gene': 'CCDC149', 'score': 9.96}, {'connected_gene': 'PI4K2B', 'score': 9.31}, {'connected_gene': 'SEPSECS', 'score': 0.44}, {'connected_gene': 'PIR60918', 'score': 0.29}]
chr4	GH04I025331	25331001	25332190	0.51	[{'connected_gene': 'ANAPC4', 'score': 10.86}, {'connected_gene': 'PI4K2B', 'score': 4.85}, {'connected_gene': 'ZCCHC4', 'score': 0.37}, {'connected_gene': 'PIR58322', 'score': 0.31}]
chr4	GH04I025178	25178246	25179444	0.84	[{'connected_gene': 'ANAPC4', 'score': 23.99}, {'connected_gene': 'PI4K2B', 'score': 7.85}, {'connected_gene': 'ENSG00000281028', 'score': 0.37}, {'connected_gene': 'SEPSECS-AS1', 'score': 0.37}, {'connected_gene': 'PIR43049', 'score': 0.26}]
chr4	GH04I025240	25240601	25241264	0.92	[{'connected_gene': 'ANAPC4', 'score': 8.8}, {'connected_gene': 'PIR48003', 'score': 0.77}, {'connected_gene': 'PI4K2B', 'score': 0.44}, {'connected_gene': 'ENSG00000281028', 'score': 0.18}]
chr4	GH04I025171	25171891	25175017	0.97	[{'connected_gene': 'ANAPC4', 'score': 34.5}, {'connected_gene': 'ZCCHC4', 'score': 11.69}, {'connected_gene': 'PI4K2B', 'score': 7.88}, {'connected_gene': 'ENSG00000281028', 'score': 0.39}, {'connected_gene': 'SEPSECS-AS1', 'score': 0.39}, {'connected_gene': 'PIR43049', 'score': 0.25}]
chr4	GH04I025312	25312099	25314036	2.09	[{'connected_gene': 'ZCCHC4', 'score': 575.85}, {'connected_gene': 'ANAPC4', 'score': 64.31}, {'connected_gene': 'DHX15', 'score': 25.84}, {'connected_gene': 'PI4K2B', 'score': 4.63}, {'connected_gene': 'PIR58322', 'score': 0.26}]
chr4	GH04I025253	25253001	25253200	0.2	[{'connected_gene': 'ENSG00000278135', 'score': 0.77}, {'connected_gene': 'PI4K2B', 'score': 0.37}, {'connected_gene': 'GC04P025279', 'score': 0.31}, {'connected_gene': 'ENSG00000281028', 'score': 0.16}]
chr4	GH04I025241	25240001	25240400	0.2	[{'connected_gene': 'PIR48003', 'score': 0.77}, {'connected_gene': 'PI4K2B', 'score': 0.44}, {'connected_gene': 'ENSG00000281028', 'score': 0.18}]