PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264596	[[178230989, 178231263], [178243612, 178243734], [178256841, 178256976], [178257261, 178257475], [178260936, 178261011], [178262629, 178262796], [178272533, 178272703], [178274461, 178274882], [178281656, 178281831], [178283442, 178284097]]	[[178231107, 178231263], [178243612, 178243734], [178256841, 178256976], [178257261, 178257475], [178260936, 178261011], [178262629, 178262796], [178272533, 178272703], [178274461, 178274882], [178281656, 178281831], [178283442, 178283625]]
ENST00000513321	[[178231056, 178231263], [178256841, 178256976], [178257261, 178257475], [178274461, 178275433]]	[[178231107, 178231263], [178256841, 178256877]]
NM_018248	[[178230990, 178231263], [178243612, 178243734], [178256841, 178256976], [178257261, 178257475], [178260936, 178261011], [178262629, 178262796], [178272533, 178272703], [178274461, 178274882], [178281656, 178281831], [178283442, 178284092]]	[[178231107, 178231263], [178243612, 178243734], [178256841, 178256976], [178257261, 178257475], [178260936, 178261011], [178262629, 178262796], [178272533, 178272703], [178274461, 178274882], [178281656, 178281831], [178283442, 178283625]]

Promoter

Chrom	Start	End	Description
chr4	178230985	178230997	CAGE_peak_3_at_NEIL3_5end
chr4	178231020	178231036	CAGE_peak_1_at_NEIL3_5end
chr4	178231053	178231065	CAGE_peak_2_at_NEIL3_5end
chr4	178231084	178231093	CAGE_peak_4_at_NEIL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I177331	177331453	177334187	0.31	[{'connected_gene': 'NEIL3', 'score': 11.78}, {'connected_gene': 'ENSG00000249008', 'score': 11.19}, {'connected_gene': 'LOC105377558', 'score': 10.6}, {'connected_gene': 'GC04M177362', 'score': 0.29}]
chr4	GH04I177239	177239208	177244480	0.38	[{'connected_gene': 'NEIL3', 'score': 10.37}, {'connected_gene': 'ENSG00000249008', 'score': 0.44}, {'connected_gene': 'LOC105377557', 'score': 0.37}]
chr4	GH04I177308	177308114	177311009	2.47	[{'connected_gene': 'NEIL3', 'score': 550.77}, {'connected_gene': 'ENSG00000248980', 'score': 13.33}, {'connected_gene': 'ENSG00000249008', 'score': 10.53}]
chr4	GH04I177281	177281218	177282091	0.38	[{'connected_gene': 'NEIL3', 'score': 12.35}, {'connected_gene': 'ENSG00000249008', 'score': 11.36}]
chr4	GH04I177307	177307601	177307800	0.4	[{'connected_gene': 'NEIL3', 'score': 0.77}, {'connected_gene': 'ENSG00000249008', 'score': 0.22}]
chr4	GH04I177292	177292994	177294196	0.51	[{'connected_gene': 'NEIL3', 'score': 0.37}, {'connected_gene': 'ENSG00000249008', 'score': 0.26}]
chr4	GH04I177265	177265474	177267255	0.54	[{'connected_gene': 'NEIL3', 'score': 10.96}, {'connected_gene': 'ENSG00000249008', 'score': 0.37}]
chr4	GH04I177255	177255801	177257474	0.43	[{'connected_gene': 'NEIL3', 'score': 11.37}, {'connected_gene': 'ENSG00000249008', 'score': 0.44}]
chr4	GH04I177270	177270897	177272697	0.49	[{'connected_gene': 'NEIL3', 'score': 11.61}, {'connected_gene': 'ENSG00000249008', 'score': 11.35}]
chr4	GH04I177299	177299819	177303359	0.38	[{'connected_gene': 'NEIL3', 'score': 0.44}, {'connected_gene': 'ENSG00000249008', 'score': 0.23}]
chr4	GH04I177251	177251380	177251502	0.67	[{'connected_gene': 'NEIL3', 'score': 1.7}, {'connected_gene': 'ENSG00000249008', 'score': 0.77}]
chr4	GH04I177321	177321999	177323531	0.92	[{'connected_gene': 'LOC105377558', 'score': 10.9}, {'connected_gene': 'ENSG00000249008', 'score': 10.75}, {'connected_gene': 'NEIL3', 'score': 0.39}, {'connected_gene': 'GC04M177362', 'score': 0.26}]
chr4	GH04I177226	177226558	177226681	0.42	[{'connected_gene': 'LOC105377557', 'score': 550.77}, {'connected_gene': 'NEIL3', 'score': 2.24}, {'connected_gene': 'GC04M177201', 'score': 0.44}, {'connected_gene': 'GC04M177202', 'score': 0.44}]
chr4	GH04I177216	177216888	177218414	0.2	[{'connected_gene': 'GC04M177201', 'score': 550.77}, {'connected_gene': 'GC04M177202', 'score': 550.77}, {'connected_gene': 'ENSG00000249008', 'score': 10.95}, {'connected_gene': 'NEIL3', 'score': 10.49}, {'connected_gene': 'GC04M177185', 'score': 0.34}]
chr4	GH04I177285	177285502	177288309	0.49	[{'connected_gene': 'ENSG00000249008', 'score': 10.97}, {'connected_gene': 'NEIL3', 'score': 0.34}]
chr4	GH04I177311	177311801	177312000	0.4	[{'connected_gene': 'ENSG00000249008', 'score': 10.53}, {'connected_gene': 'NEIL3', 'score': 0.77}, {'connected_gene': 'GC04M177362', 'score': 0.23}]
chr4	GH04I177250	177250001	177250433	0.88	[{'connected_gene': 'ENSG00000249008', 'score': 550.77}, {'connected_gene': 'NEIL3', 'score': 0.22}]
chr4	GH04I177339	177339800	177340016	1.05	[{'connected_gene': 'ENSG00000249008', 'score': 11.55}, {'connected_gene': 'NEIL3', 'score': 11.3}, {'connected_gene': 'GC04M177362', 'score': 0.31}]
chr4	GH04I177319	177319715	177320440	0.76	[{'connected_gene': 'ENSG00000249008', 'score': 10.67}, {'connected_gene': 'ENSG00000248980', 'score': 10.47}, {'connected_gene': 'LOC105377558', 'score': 10.09}, {'connected_gene': 'NEIL3', 'score': 0.39}, {'connected_gene': 'GC04M177362', 'score': 0.25}]
chr4	GH04I177315	177315601	177317492	0.83	[{'connected_gene': 'ENSG00000249008', 'score': 10.69}, {'connected_gene': 'LOC105377558', 'score': 10.09}, {'connected_gene': 'NEIL3', 'score': 0.44}, {'connected_gene': 'GC04M177362', 'score': 0.25}]