PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000487251	[[53659294, 53659414], [53659533, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762086, 53762157], [53764544, 53764689], [53767426, 53767545], [53769176, 53770160]]	[[53660054, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762086, 53762113]]
ENST00000370888	[[53659777, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762082, 53762157], [53764544, 53764689], [53767426, 53767545], [53769176, 53769260], [53778651, 53778767], [53784295, 53784468], [53785422, 53785559], [53787432, 53788919]]	[[53660054, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762082, 53762157], [53764544, 53764689], [53767426, 53767545], [53769176, 53769260], [53778651, 53778767], [53784295, 53784468], [53785422, 53785559], [53787432, 53787591]]
ENST00000370882	[[53659887, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53748748, 53748943]]	[[53660054, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53748748, 53748767]]
ENST00000490222	[[53784037, 53784468], [53785422, 53785546]]	None
NM_018214	[[53659777, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762082, 53762157], [53764544, 53764689], [53767426, 53767545], [53769176, 53769260], [53778651, 53778767], [53784295, 53784468], [53785422, 53785559], [53787432, 53788919]]	[[53660054, 53660213], [53706907, 53707025], [53743790, 53743869], [53747684, 53747774], [53761295, 53761352], [53761626, 53761690], [53762082, 53762157], [53764544, 53764689], [53767426, 53767545], [53769176, 53769260], [53778651, 53778767], [53784295, 53784468], [53785422, 53785559], [53787432, 53787591]]

Promoter

Chrom	Start	End	Description
chr6	53659746	53659817	CAGE_peak_1_at_LRRC1_5end
chr6	53659849	53659861	CAGE_peak_6_at_LRRC1_5end
chr6	53659877	53659907	CAGE_peak_2_at_LRRC1_5end
chr6	53659912	53659929	CAGE_peak_3_at_LRRC1_5end
chr6	53659932	53659943	CAGE_peak_8_at_LRRC1_5end
chr6	53784052	53784055	CAGE_peak_7_at_LRRC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I053956	53956203	53956332	0.75	[{'connected_gene': 'MLIP', 'score': 11.14}, {'connected_gene': 'LOC101927189', 'score': 11.14}, {'connected_gene': 'LRRC1', 'score': 6.63}, {'connected_gene': 'PIR57668', 'score': 0.39}, {'connected_gene': 'GC06P053984', 'score': 0.31}]
chr6	GH06I053894	53894200	53894401	0.38	[{'connected_gene': 'MLIP', 'score': 11.23}, {'connected_gene': 'LOC101927189', 'score': 11.23}, {'connected_gene': 'GC06M053813', 'score': 0.77}, {'connected_gene': 'PIR32511', 'score': 0.39}, {'connected_gene': 'LRRC1', 'score': 0.15}]
chr6	GH06I053910	53910739	53911953	0.43	[{'connected_gene': 'LRRC1', 'score': 19.39}, {'connected_gene': 'ENSG00000228614', 'score': 10.72}, {'connected_gene': 'MLIP', 'score': 5.54}, {'connected_gene': 'ENSG00000271218', 'score': 0.44}, {'connected_gene': 'GC06M053813', 'score': 0.39}]
chr6	GH06I053791	53791954	53797782	2.45	[{'connected_gene': 'LRRC1', 'score': 565.12}, {'connected_gene': 'ENSG00000228614', 'score': 550.77}, {'connected_gene': 'KLHL31', 'score': 13.36}, {'connected_gene': 'MLIP-IT1', 'score': 8.51}, {'connected_gene': 'ENSG00000227885', 'score': 4.84}, {'connected_gene': 'PIR32511', 'score': 0.17}]
chr6	GH06I053737	53737182	53738829	0.52	[{'connected_gene': 'LRRC1', 'score': 18.63}, {'connected_gene': 'ENSG00000228614', 'score': 11.57}, {'connected_gene': 'KLHL31', 'score': 10.97}, {'connected_gene': 'MLIP-IT1', 'score': 9.79}, {'connected_gene': 'ENSG00000227885', 'score': 0.44}]
chr6	GH06I053743	53743951	53745282	0.69	[{'connected_gene': 'LRRC1', 'score': 11.6}, {'connected_gene': 'ENSG00000228614', 'score': 11.6}, {'connected_gene': 'ENSG00000227885', 'score': 9.54}, {'connected_gene': 'KLHL31', 'score': 0.18}]
chr6	GH06I053799	53799203	53800301	0.43	[{'connected_gene': 'LRRC1', 'score': 8.61}, {'connected_gene': 'LOC101927189', 'score': 6.97}, {'connected_gene': 'PIR32511', 'score': 0.18}]
chr6	GH06I053854	53854329	53856024	0.88	[{'connected_gene': 'LRRC1', 'score': 15.97}, {'connected_gene': 'ENSG00000228614', 'score': 11.08}, {'connected_gene': 'MLIP-IT1', 'score': 5.6}, {'connected_gene': 'KLHL31', 'score': 4.3}, {'connected_gene': 'LOC101927189', 'score': 4.28}, {'connected_gene': 'PIR32511', 'score': 0.31}, {'connected_gene': 'GC06M053813', 'score': 0.26}]
chr6	GH06I053832	53832043	53832192	0.63	[{'connected_gene': 'LRRC1', 'score': 0.28}, {'connected_gene': 'PIR32511', 'score': 0.23}, {'connected_gene': 'GC06M053813', 'score': 0.2}]
chr6	GH06I053733	53733371	53736353	1.03	[{'connected_gene': 'KLHL31', 'score': 11.03}, {'connected_gene': 'MLIP-IT1', 'score': 9.71}, {'connected_gene': 'LRRC1', 'score': 7.44}, {'connected_gene': 'ENSG00000227885', 'score': 0.39}]
chr6	GH06I052918	52918027	52921410	0.88	[{'connected_gene': 'GSTA4', 'score': 8.47}, {'connected_gene': 'GSTA3', 'score': 7.15}, {'connected_gene': 'LRRC1', 'score': 6.56}, {'connected_gene': 'GC06P052940', 'score': 0.34}]
chr6	GH06I053040	53040580	53044964	1.12	[{'connected_gene': 'GSTA3', 'score': 9.99}, {'connected_gene': 'ICK', 'score': 5.45}, {'connected_gene': 'LRRC1', 'score': 4.06}, {'connected_gene': 'FBXO9', 'score': 0.44}, {'connected_gene': 'GC06P053034', 'score': 0.44}]
chr6	GH06I053812	53812642	53815207	0.59	[{'connected_gene': 'LOC101927189', 'score': 17.68}, {'connected_gene': 'MLIP', 'score': 10.62}, {'connected_gene': 'LRRC1', 'score': 8.62}, {'connected_gene': 'KLHL31', 'score': 5.3}, {'connected_gene': 'PIR32511', 'score': 0.19}, {'connected_gene': 'GC06M053813', 'score': 0.18}]
chr6	GH06I053815	53815364	53816095	0.71	[{'connected_gene': 'LOC101927189', 'score': 16.0}, {'connected_gene': 'MLIP', 'score': 10.63}, {'connected_gene': 'LRRC1', 'score': 8.85}, {'connected_gene': 'PIR32511', 'score': 0.2}, {'connected_gene': 'GC06M053813', 'score': 0.18}]
chr6	GH06I053809	53809692	53812226	1.13	[{'connected_gene': 'LOC101927189', 'score': 17.88}, {'connected_gene': 'MLIP', 'score': 10.86}, {'connected_gene': 'ENSG00000227885', 'score': 5.71}, {'connected_gene': 'LRRC1', 'score': 0.37}, {'connected_gene': 'PIR32511', 'score': 0.19}]
chr6	GH06I053838	53838483	53838632	0.56	[{'connected_gene': 'LOC101927189', 'score': 4.36}, {'connected_gene': 'LRRC1', 'score': 0.26}, {'connected_gene': 'PIR32511', 'score': 0.25}, {'connected_gene': 'GC06M053813', 'score': 0.21}]
chr6	GH06I053837	53837815	53838377	0.38	[{'connected_gene': 'LOC101927189', 'score': 5.71}, {'connected_gene': 'LRRC1', 'score': 0.26}, {'connected_gene': 'PIR32511', 'score': 0.25}, {'connected_gene': 'GC06M053813', 'score': 0.21}]
chr6	GH06I053802	53802912	53804127	0.31	[{'connected_gene': 'LOC101927189', 'score': 6.98}, {'connected_gene': 'ENSG00000227885', 'score': 5.17}, {'connected_gene': 'LRRC1', 'score': 0.44}, {'connected_gene': 'PIR32511', 'score': 0.18}]
chr6	GH06I053825	53825226	53830819	1.12	[{'connected_gene': 'LOC101927189', 'score': 16.28}, {'connected_gene': 'MLIP-IT1', 'score': 11.16}, {'connected_gene': 'MLIP', 'score': 10.66}, {'connected_gene': 'LRRC1', 'score': 8.51}, {'connected_gene': 'KLHL31', 'score': 7.66}, {'connected_gene': 'PIR32511', 'score': 0.22}, {'connected_gene': 'GC06M053813', 'score': 0.19}]
chr6	GH06I053961	53961196	53963078	0.49	[{'connected_gene': 'MLIP-IT1', 'score': 13.25}, {'connected_gene': 'MLIP', 'score': 12.01}, {'connected_gene': 'LOC101927189', 'score': 12.01}, {'connected_gene': 'LRRC1', 'score': 5.67}, {'connected_gene': 'ENSG00000227885', 'score': 5.11}, {'connected_gene': 'PIR57668', 'score': 0.37}, {'connected_gene': 'GC06P053984', 'score': 0.34}]
chr6	GH06I053740	53740993	53742185	0.63	[{'connected_gene': 'MLIP-IT1', 'score': 9.69}, {'connected_gene': 'LRRC1', 'score': 7.41}, {'connected_gene': 'KLHL31', 'score': 7.16}, {'connected_gene': 'ENSG00000227885', 'score': 4.59}]
chr6	GH06I053722	53722477	53725538	0.6	[{'connected_gene': 'MLIP-IT1', 'score': 9.1}, {'connected_gene': 'KLHL31', 'score': 8.42}, {'connected_gene': 'ENSG00000227885', 'score': 5.88}, {'connected_gene': 'LRRC1', 'score': 4.49}]
chr6	GH06I053751	53751884	53753978	0.56	[{'connected_gene': 'MLIP-IT1', 'score': 10.29}, {'connected_gene': 'ENSG00000227885', 'score': 9.04}, {'connected_gene': 'KLHL31', 'score': 8.59}, {'connected_gene': 'LRRC1', 'score': 8.0}, {'connected_gene': 'ENSG00000228614', 'score': 0.26}]
chr6	GH06I053861	53861404	53865128	0.66	[{'connected_gene': 'MLIP-IT1', 'score': 11.92}, {'connected_gene': 'LOC101927189', 'score': 5.36}, {'connected_gene': 'KLHL31', 'score': 5.29}, {'connected_gene': 'LRRC1', 'score': 4.64}, {'connected_gene': 'PIR32511', 'score': 0.34}, {'connected_gene': 'GC06M053813', 'score': 0.28}]
chr6	GH06I053870	53870083	53870252	0.57	[{'connected_gene': 'PIR32511', 'score': 0.39}, {'connected_gene': 'GC06M053813', 'score': 0.31}, {'connected_gene': 'LRRC1', 'score': 0.18}]
chr6	GH06I053916	53916883	53917032	0.2	[{'connected_gene': 'ENSG00000271218', 'score': 0.77}, {'connected_gene': 'GC06M053813', 'score': 0.37}, {'connected_gene': 'LRRC1', 'score': 0.13}]
chr6	GH06I053869	53869329	53869352	0.22	[{'connected_gene': 'PIR32511', 'score': 0.39}, {'connected_gene': 'GC06M053813', 'score': 0.31}, {'connected_gene': 'LRRC1', 'score': 0.19}]