PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374692	[[108456824, 108457053], [108467877, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108538893]]	[[108456941, 108457053], [108467877, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108536361]]
ENST00000374688	[[108463264, 108463924], [108467877, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108538893]]	[[108467927, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108536361]]
ENST00000435034	[[108467955, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108511356, 108511392], [108536145, 108536360]]	[[108467955, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108511356, 108511374]]
ENST00000434214	[[108456824, 108457053], [108464987, 108465103], [108467877, 108468034]]	[[108467927, 108468034]]
ENST00000451560	[[108483967, 108484002], [108484814, 108484902], [108510353, 108510471], [108511353, 108511563]]	[[108483967, 108484002], [108484814, 108484902], [108510353, 108510471], [108511353, 108511356]]
NM_018112	[[108456805, 108457053], [108467877, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108538892]]	[[108456941, 108457053], [108467877, 108468034], [108483817, 108484002], [108484814, 108484902], [108510353, 108510471], [108536145, 108536361]]

Promoter

Chrom	Start	End	Description
chr9	108456622	108456659	CAGE_peak_4_at_TMEM38B_5end
chr9	108456800	108456849	CAGE_peak_1_at_TMEM38B_5end
chr9	108456850	108456882	CAGE_peak_2_at_TMEM38B_5end
chr9	108456891	108456909	CAGE_peak_3_at_TMEM38B_5end
chr9	108463234	108463245	CAGE_peak_7_at_TMEM38B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I105504	105504022	105504146	0.68	[{'connected_gene': 'FSD1L', 'score': 12.35}, {'connected_gene': 'TMEM38B', 'score': 3.97}, {'connected_gene': 'RALGAPA1P1', 'score': 0.37}]
chr9	GH09I105509	105509600	105510666	0.81	[{'connected_gene': 'FSD1L', 'score': 10.89}, {'connected_gene': 'TMEM38B', 'score': 3.05}, {'connected_gene': 'RALGAPA1P1', 'score': 0.44}]
chr9	GH09I105437	105437780	105440301	0.74	[{'connected_gene': 'TMEM38B', 'score': 4.27}, {'connected_gene': 'FSD1L', 'score': 0.77}, {'connected_gene': 'SLC44A1', 'score': 0.08}]
chr9	GH09I105683	105683464	105684647	0.2	[{'connected_gene': 'TMEM38B', 'score': 18.84}, {'connected_gene': 'TAL2', 'score': 12.08}]
chr9	GH09I105673	105673000	105673149	0.73	[{'connected_gene': 'TMEM38B', 'score': 12.19}, {'connected_gene': 'TAL2', 'score': 0.39}]
chr9	GH09I105681	105681860	105681949	0.82	[{'connected_gene': 'TMEM38B', 'score': 7.13}, {'connected_gene': 'TAL2', 'score': 0.37}]
chr9	GH09I105317	105317169	105321050	1	[{'connected_gene': 'TMEM38B', 'score': 4.54}, {'connected_gene': 'SLC44A1', 'score': 0.19}, {'connected_gene': 'FSD1L', 'score': 0.13}]
chr9	GH09I105646	105646692	105648349	0.93	[{'connected_gene': 'TMEM38B', 'score': 11.1}, {'connected_gene': 'FKTN', 'score': 6.64}, {'connected_gene': 'FSD1L', 'score': 4.54}, {'connected_gene': 'ENSG00000279609', 'score': 0.44}, {'connected_gene': 'GC09M105565', 'score': 0.18}]
chr9	GH09I105973	105972715	105978020	0.52	[{'connected_gene': 'TMEM38B', 'score': 4.65}, {'connected_gene': 'LOC105376201', 'score': 0.2}, {'connected_gene': 'SLC25A6P5', 'score': 0.13}]
chr9	GH09I105969	105969306	105970368	0.38	[{'connected_gene': 'TMEM38B', 'score': 4.17}, {'connected_gene': 'LOC105376201', 'score': 0.19}, {'connected_gene': 'SLC25A6P5', 'score': 0.13}]
chr9	GH09I105693	105693500	105696001	1.96	[{'connected_gene': 'TMEM38B', 'score': 574.1}, {'connected_gene': 'LOC100421293', 'score': 0.37}]
chr9	GH09I105708	105708620	105708769	0.2	[{'connected_gene': 'TMEM38B', 'score': 6.01}, {'connected_gene': 'LOC100421293', 'score': 0.77}]
chr9	GH09I105700	105700245	105702041	0.59	[{'connected_gene': 'TMEM38B', 'score': 23.88}, {'connected_gene': 'LOC100421293', 'score': 0.44}]
chr9	GH09I105909	105909916	105915608	1.34	[{'connected_gene': 'TMEM38B', 'score': 5.13}, {'connected_gene': 'SLC25A6P5', 'score': 0.21}, {'connected_gene': 'LOC105376201', 'score': 0.13}]
chr9	GH09I105836	105836964	105837817	0.2	[{'connected_gene': 'TMEM38B', 'score': 7.11}, {'connected_gene': 'SLC25A6P5', 'score': 0.39}, {'connected_gene': 'GC09P105768', 'score': 0.2}]
chr9	GH09I105289	105289805	105293585	1.58	[{'connected_gene': 'SLC44A1', 'score': 18.62}, {'connected_gene': 'ABCA1', 'score': 9.11}, {'connected_gene': 'TMEM38B', 'score': 4.14}, {'connected_gene': 'FSD1L', 'score': 1.38}]
chr9	GH09I105293	105293920	105300930	1.55	[{'connected_gene': 'SLC44A1', 'score': 18.07}, {'connected_gene': 'ABCA1', 'score': 13.29}, {'connected_gene': 'TMEM38B', 'score': 6.85}, {'connected_gene': 'FSD1L', 'score': 1.84}]
chr9	GH09I105280	105280107	105282564	0.93	[{'connected_gene': 'ABCA1', 'score': 8.46}, {'connected_gene': 'SLC44A1', 'score': 6.33}, {'connected_gene': 'TMEM38B', 'score': 3.74}, {'connected_gene': 'FSD1L', 'score': 1.44}]
chr9	GH09I105711	105711820	105712210	0.34	[{'connected_gene': 'LOC100421293', 'score': 550.77}, {'connected_gene': 'TMEM38B', 'score': 20.23}, {'connected_gene': 'GC09P105744', 'score': 0.29}]