PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370996	[[58511893, 58515352]]	[[58514086, 58514986]]
NM_006242	[[58511886, 58515352]]	[[58514086, 58514986]]

Promoter

Chrom	Start	End	Description
chr20	58515284	58515311	CAGE_peak_2_at_PPP1R3D_5end
chr20	58515344	58515366	CAGE_peak_1_at_PPP1R3D_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I059876	59876366	59876732	0.22	[{'connected_gene': 'FAM217B', 'score': 12.76}, {'connected_gene': 'SYCP2', 'score': 7.79}, {'connected_gene': 'PPP1R3D', 'score': 1.93}, {'connected_gene': 'RNU7-141P', 'score': 0.34}]
chr20	GH20I059950	59950006	59950155	0.62	[{'connected_gene': 'CDH26', 'score': 0.44}, {'connected_gene': 'PPP1R3D', 'score': 0.44}]
chr20	GH20I059955	59955366	59955435	0.76	[{'connected_gene': 'CDH26', 'score': 550.77}, {'connected_gene': 'C20orf197', 'score': 10.95}, {'connected_gene': 'PPP1R3D', 'score': 0.37}]
chr20	GH20I059954	59954644	59955340	0.77	[{'connected_gene': 'CDH26', 'score': 550.77}, {'connected_gene': 'C20orf197', 'score': 10.95}, {'connected_gene': 'PPP1R3D', 'score': 0.39}]
chr20	GH20I059938	59938318	59942302	2.07	[{'connected_gene': 'PPP1R3D', 'score': 550.77}, {'connected_gene': 'FAM217B', 'score': 550.44}, {'connected_gene': 'NELFCD', 'score': 34.84}, {'connected_gene': 'CDH26', 'score': 0.37}]
chr20	GH20I060059	60059962	60061545	0.97	[{'connected_gene': 'PPP1R3D', 'score': 9.38}, {'connected_gene': 'C20orf197', 'score': 8.7}, {'connected_gene': 'ENSG00000276093', 'score': 0.34}]
chr20	GH20I059948	59948202	59949599	0.84	[{'connected_gene': 'C20orf197', 'score': 11.56}, {'connected_gene': 'CDH26', 'score': 0.44}, {'connected_gene': 'PPP1R3D', 'score': 0.44}, {'connected_gene': 'FAM217B', 'score': 0.37}]
chr20	GH20I060105	60105001	60105800	1.01	[{'connected_gene': 'C20orf197', 'score': 7.69}, {'connected_gene': 'PPP1R3D', 'score': 2.62}, {'connected_gene': 'FAM217B', 'score': 2.25}, {'connected_gene': 'CDH26', 'score': 1.2}, {'connected_gene': 'MIR646HG', 'score': 0.37}, {'connected_gene': 'PIR59955', 'score': 0.12}]
chr20	GH20I060228	60228366	60228599	0.71	[{'connected_gene': 'C20orf197', 'score': 12.01}, {'connected_gene': 'PPP1R3D', 'score': 4.89}, {'connected_gene': 'FAM217B', 'score': 3.61}, {'connected_gene': 'PIR59955', 'score': 0.39}, {'connected_gene': 'MIR646HG', 'score': 0.11}]
chr20	GH20I060045	60045801	60047320	1.29	[{'connected_gene': 'C20orf197', 'score': 9.34}, {'connected_gene': 'PPP1R3D', 'score': 4.18}, {'connected_gene': 'FAM217B', 'score': 1.95}, {'connected_gene': 'PHACTR3', 'score': 1.72}, {'connected_gene': 'CDH26', 'score': 0.16}]
chr20	GH20I060054	60054522	60059373	1.56	[{'connected_gene': 'C20orf197', 'score': 569.29}, {'connected_gene': 'PPP1R3D', 'score': 10.83}, {'connected_gene': 'FAM217B', 'score': 4.5}, {'connected_gene': 'SYCP2', 'score': 2.02}, {'connected_gene': 'ENSG00000276093', 'score': 0.31}]
chr20	GH20I060008	60008523	60008804	0.5	[{'connected_gene': 'C20orf197', 'score': 14.7}, {'connected_gene': 'PPP1R3D', 'score': 1.4}, {'connected_gene': 'CDH26', 'score': 0.23}]
chr20	GH20I059933	59933400	59934755	1.97	[{'connected_gene': 'SYCP2', 'score': 550.77}, {'connected_gene': 'FAM217B', 'score': 550.77}, {'connected_gene': 'NELFCD', 'score': 14.58}, {'connected_gene': 'PPP1R3D', 'score': 0.44}]