PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000317357	[[107811161, 107811916], [107824860, 107824999], [107827445, 107827631], [107854662, 107854814], [107908283, 107908379], [107954717, 107956673], [107979410, 107981357]]	[[107811820, 107811916], [107824860, 107824999], [107827445, 107827631], [107854662, 107854814], [107908283, 107908379], [107954717, 107956670]]
ENST00000477448	[[107811309, 107811916], [107824860, 107824999], [107827445, 107827631], [107854662, 107854814], [107879040, 107879491]]	None
ENST00000494935	[[107956193, 107956673], [107957428, 107957520]]	None
NM_018013	[[107811316, 107811916], [107824860, 107824999], [107827445, 107827631], [107854662, 107854814], [107908283, 107908379], [107954717, 107956673], [107979410, 107982513]]	[[107811820, 107811916], [107824860, 107824999], [107827445, 107827631], [107854662, 107854814], [107908283, 107908379], [107954717, 107956670]]

Promoter

Chrom	Start	End	Description
chr6	107811185	107811196	CAGE_peak_10_at_SOBP_5end
chr6	107811268	107811286	CAGE_peak_2_at_SOBP_5end
chr6	107811288	107811297	CAGE_peak_5_at_SOBP_5end
chr6	107811307	107811346	CAGE_peak_1_at_SOBP_5end
chr6	107811359	107811370	CAGE_peak_6_at_SOBP_5end
chr6	107811391	107811415	CAGE_peak_3_at_SOBP_5end
chr6	107811746	107811766	CAGE_peak_12_at_SOBP_5end
chr6	107811776	107811811	CAGE_peak_4_at_SOBP_5end
chr6	107954916	107954929	CAGE_peak_13_at_SOBP_5end
chr6	107955013	107955030	CAGE_peak_8_at_SOBP_5end
chr6	107956089	107956119	CAGE_peak_7_at_SOBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I106509	106509487	106517200	2.38	[{'connected_gene': 'BEND3', 'score': 20.41}, {'connected_gene': 'SOBP', 'score': 20.03}, {'connected_gene': 'ATG5', 'score': 19.43}, {'connected_gene': 'CRYBG1', 'score': 12.85}, {'connected_gene': 'QRSL1', 'score': 9.18}, {'connected_gene': 'LOC101927405', 'score': 0.39}, {'connected_gene': 'GC06P106528', 'score': 0.37}]
chr6	GH06I107633	107633776	107635540	0.43	[{'connected_gene': 'BEND3', 'score': 11.79}, {'connected_gene': 'GC06P107632', 'score': 0.77}, {'connected_gene': 'PIR51849', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.11}]
chr6	GH06I107654	107654615	107659914	1.75	[{'connected_gene': 'BEND3', 'score': 11.78}, {'connected_gene': 'PIR51849', 'score': 0.77}, {'connected_gene': 'GC06P107632', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I107458	107458400	107460652	2.09	[{'connected_gene': 'PDSS2', 'score': 550.77}, {'connected_gene': 'PIR39325', 'score': 550.77}, {'connected_gene': 'SOBP', 'score': 5.56}]
chr6	GH06I107241	107241066	107242852	0.96	[{'connected_gene': 'SOBP', 'score': 7.74}, {'connected_gene': 'PDSS2', 'score': 4.6}, {'connected_gene': 'GC06P107237', 'score': 0.77}, {'connected_gene': 'GC06P107246', 'score': 0.77}]
chr6	GH06I107452	107452129	107452198	0.23	[{'connected_gene': 'SOBP', 'score': 1.9}, {'connected_gene': 'PDSS2', 'score': 0.44}, {'connected_gene': 'PIR39325', 'score': 0.44}, {'connected_gene': 'GC06P107406', 'score': 0.25}]
chr6	GH06I107488	107488477	107496399	2.44	[{'connected_gene': 'SOBP', 'score': 556.02}, {'connected_gene': 'PDSS2', 'score': 10.74}, {'connected_gene': 'ENSG00000234206', 'score': 0.37}, {'connected_gene': 'GC06M107466', 'score': 0.34}]
chr6	GH06I107318	107318200	107318401	0.72	[{'connected_gene': 'SOBP', 'score': 4.62}, {'connected_gene': 'GC06P107268', 'score': 0.25}, {'connected_gene': 'PIR39423', 'score': 0.22}, {'connected_gene': 'PDSS2', 'score': 0.11}]
chr6	GH06I107290	107290577	107290928	0.52	[{'connected_gene': 'SOBP', 'score': 5.8}, {'connected_gene': 'GC06P107268', 'score': 0.34}, {'connected_gene': 'PIR39423', 'score': 0.18}, {'connected_gene': 'PDSS2', 'score': 0.1}]
chr6	GH06I107329	107329995	107331139	0.56	[{'connected_gene': 'SOBP', 'score': 13.08}, {'connected_gene': 'LINC02526', 'score': 4.82}, {'connected_gene': 'PIR39423', 'score': 0.26}, {'connected_gene': 'GC06P107268', 'score': 0.21}, {'connected_gene': 'PDSS2', 'score': 0.13}]
chr6	GH06I107606	107606497	107608053	0.43	[{'connected_gene': 'SOBP', 'score': 5.31}, {'connected_gene': 'PIR36087', 'score': 0.37}, {'connected_gene': 'PIR44328', 'score': 0.34}]
chr6	GH06I106536	106536602	106538600	0.72	[{'connected_gene': 'GC06P106538', 'score': 550.77}, {'connected_gene': 'QRSL1', 'score': 14.62}, {'connected_gene': 'CRYBG1', 'score': 7.36}, {'connected_gene': 'SOBP', 'score': 5.3}, {'connected_gene': 'GC06P106528', 'score': 0.44}]
chr6	GH06I107511	107511204	107513140	0.86	[{'connected_gene': 'ENSG00000234206', 'score': 557.69}, {'connected_gene': 'GC06M107466', 'score': 0.44}, {'connected_gene': 'SOBP', 'score': 0.34}]
chr6	GH06I107645	107645625	107647173	0.46	[{'connected_gene': 'GC06P107632', 'score': 0.39}, {'connected_gene': 'PIR51849', 'score': 0.39}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I107610	107610403	107612596	0.72	[{'connected_gene': 'PIR44328', 'score': 0.37}, {'connected_gene': 'PIR36087', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.13}]
chr6	GH06I107641	107641244	107643209	0.76	[{'connected_gene': 'GC06P107632', 'score': 0.44}, {'connected_gene': 'PIR51849', 'score': 0.37}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I107579	107579077	107579286	0.43	[{'connected_gene': 'PIR36087', 'score': 0.39}, {'connected_gene': 'GC06M107466', 'score': 0.21}, {'connected_gene': 'SOBP', 'score': 0.17}]
chr6	GH06I107660	107660917	107661126	0.31	[{'connected_gene': 'PIR51849', 'score': 550.77}, {'connected_gene': 'ENSG00000280135', 'score': 0.28}, {'connected_gene': 'SOBP', 'score': 0.09}]
chr6	GH06I107600	107600937	107601611	0.74	[{'connected_gene': 'PIR36087', 'score': 0.39}, {'connected_gene': 'PIR44328', 'score': 0.31}, {'connected_gene': 'SOBP', 'score': 0.14}]
chr6	GH06I107653	107653325	107653466	0.92	[{'connected_gene': 'PIR51849', 'score': 0.44}, {'connected_gene': 'GC06P107632', 'score': 0.34}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I107539	107539057	107541234	1.01	[{'connected_gene': 'ENSG00000234206', 'score': 7.13}, {'connected_gene': 'GC06M107466', 'score': 0.34}, {'connected_gene': 'PIR36087', 'score': 0.25}, {'connected_gene': 'SOBP', 'score': 0.23}]
chr6	GH06I107559	107559924	107562348	0.79	[{'connected_gene': 'PIR36087', 'score': 0.31}, {'connected_gene': 'GC06M107466', 'score': 0.26}, {'connected_gene': 'SOBP', 'score': 0.19}]
chr6	GH06I107532	107532460	107533365	0.31	[{'connected_gene': 'GC06M107466', 'score': 0.37}, {'connected_gene': 'SOBP', 'score': 0.26}, {'connected_gene': 'PIR36087', 'score': 0.22}]
chr6	GH06I107601	107600201	107600400	0.2	[{'connected_gene': 'PIR36087', 'score': 0.39}, {'connected_gene': 'PIR44328', 'score': 0.31}, {'connected_gene': 'SOBP', 'score': 0.14}]
chr6	GH06I107632	107632413	107632625	0.4	[{'connected_gene': 'GC06P107632', 'score': 550.77}, {'connected_gene': 'PIR51849', 'score': 0.31}, {'connected_gene': 'SOBP', 'score': 0.11}]
chr6	GH06I107647	107647547	107648565	0.2	[{'connected_gene': 'PIR51849', 'score': 0.39}, {'connected_gene': 'GC06P107632', 'score': 0.37}, {'connected_gene': 'SOBP', 'score': 0.1}]
chr6	GH06I107618	107618215	107619597	0.62	[{'connected_gene': 'PIR44328', 'score': 0.44}, {'connected_gene': 'PIR36087', 'score': 0.31}, {'connected_gene': 'SOBP', 'score': 0.13}]
chr6	GH06I107509	107509537	107510326	0.96	[{'connected_gene': 'ENSG00000234206', 'score': 557.48}, {'connected_gene': 'GC06M107466', 'score': 0.44}, {'connected_gene': 'SOBP', 'score': 0.37}]