PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000520167	[[74884671, 74884856], [74888064, 74888196], [74890990, 74891096], [74891313, 74891369]]	None
ENST00000523794	[[74884786, 74885228], [74888064, 74888196], [74888539, 74888726]]	None
ENST00000416961	[[74888429, 74888726], [74890990, 74891096], [74891313, 74891406], [74893389, 74893821]]	[[74888516, 74888726], [74890990, 74891096], [74891313, 74891333]]
ENST00000517439	[[74888441, 74888726], [74890990, 74891110], [74893389, 74893601]]	[[74888516, 74888726], [74890990, 74891104]]
ENST00000312184	[[74888443, 74888726], [74890990, 74891096], [74893389, 74895018]]	[[74888516, 74888726], [74890990, 74891096], [74893389, 74893856]]
ENST00000517614	[[74888453, 74888726], [74890990, 74891256]]	None
ENST00000519551	[[74890982, 74891096], [74891313, 74891406], [74893389, 74893716]]	None
NM_017866	[[74888376, 74888726], [74890990, 74891096], [74893389, 74895018]]	[[74888516, 74888726], [74890990, 74891096], [74893389, 74893856]]
NR_033334	[[74888376, 74888726], [74890990, 74891096], [74891313, 74891406], [74893389, 74895018]]	None
NM_001040613	[[74888376, 74888726], [74890990, 74891110], [74893389, 74895018]]	[[74888516, 74888726], [74890990, 74891104]]

Promoter

Chrom	Start	End	Description
chr8	74888417	74888485	CAGE_peak_1_at_TMEM70_5end
chr8	74888516	74888527	CAGE_peak_3_at_TMEM70_5end
chr8	74888542	74888594	CAGE_peak_2_at_TMEM70_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I073956	73956035	73956094	0.5	[{'connected_gene': 'ELOC', 'score': 550.37}, {'connected_gene': 'TMEM70', 'score': 13.08}, {'connected_gene': 'GC08P073966', 'score': 0.39}, {'connected_gene': 'GC08M073941', 'score': 0.37}, {'connected_gene': 'GC08P073922', 'score': 0.29}]
chr8	GH08I073876	73876833	73880570	2.04	[{'connected_gene': 'UBE2W', 'score': 557.24}, {'connected_gene': 'ENSG00000258677', 'score': 550.77}, {'connected_gene': 'LINC01617', 'score': 550.77}, {'connected_gene': 'TMEM70', 'score': 10.37}, {'connected_gene': 'ELOC', 'score': 10.37}, {'connected_gene': 'RN7SL760P', 'score': 0.26}]
chr8	GH08I073970	73970118	73973723	2.08	[{'connected_gene': 'TMEM70', 'score': 563.15}, {'connected_gene': 'GC08M073941', 'score': 550.77}, {'connected_gene': 'ELOC', 'score': 550.77}, {'connected_gene': 'ENSG00000253341', 'score': 11.53}, {'connected_gene': 'RPL7', 'score': 10.78}, {'connected_gene': 'GC08P073966', 'score': 0.44}]
chr8	GH08I073887	73887909	73888614	0.49	[{'connected_gene': 'TMEM70', 'score': 10.48}, {'connected_gene': 'ELOC', 'score': 10.48}, {'connected_gene': 'STAU2', 'score': 10.3}, {'connected_gene': 'UBE2W', 'score': 6.89}, {'connected_gene': 'LINC01617', 'score': 0.44}, {'connected_gene': 'PIR51756', 'score': 0.37}]
chr8	GH08I073892	73892828	73893235	0.85	[{'connected_gene': 'TMEM70', 'score': 10.48}, {'connected_gene': 'ELOC', 'score': 10.48}, {'connected_gene': 'STAU2', 'score': 10.42}, {'connected_gene': 'ENSG00000253596', 'score': 9.42}, {'connected_gene': 'GDAP1', 'score': 9.42}, {'connected_gene': 'UBE2W', 'score': 5.76}, {'connected_gene': 'PIR51756', 'score': 0.39}, {'connected_gene': 'LINC01617', 'score': 0.39}]
chr8	GH08I073994	73994801	73995840	0.2	[{'connected_gene': 'TMEM70', 'score': 24.45}, {'connected_gene': 'ELOC', 'score': 11.94}, {'connected_gene': 'LY96', 'score': 0.77}, {'connected_gene': 'GC08M074003', 'score': 0.29}]
chr8	GH08I073975	73975404	73977801	1.98	[{'connected_gene': 'TMEM70', 'score': 575.7}, {'connected_gene': 'RPL7', 'score': 21.44}, {'connected_gene': 'ENSG00000253341', 'score': 13.13}, {'connected_gene': 'ENSG00000272254', 'score': 11.03}, {'connected_gene': 'UBE2W', 'score': 10.35}, {'connected_gene': 'GC08M073979', 'score': 0.77}]
chr8	GH08I074032	74032816	74033717	0.2	[{'connected_gene': 'TMEM70', 'score': 16.55}, {'connected_gene': 'LY96', 'score': 11.03}, {'connected_gene': 'ELOC', 'score': 10.49}, {'connected_gene': 'GC08M074003', 'score': 0.77}, {'connected_gene': 'RNU6-1300P', 'score': 0.37}]
chr8	GH08I074008	74008353	74009615	0.38	[{'connected_gene': 'TMEM70', 'score': 7.35}, {'connected_gene': 'LY96', 'score': 0.37}, {'connected_gene': 'GC08M074003', 'score': 0.34}]
chr8	GH08I074014	74014378	74014506	0.27	[{'connected_gene': 'LY96', 'score': 3.89}, {'connected_gene': 'UBE2W', 'score': 2.96}, {'connected_gene': 'TMEM70', 'score': 2.28}, {'connected_gene': 'GC08M074003', 'score': 0.39}]
chr8	GH08I074033	74032546	74032695	0.2	[{'connected_gene': 'LY96', 'score': 11.03}, {'connected_gene': 'TMEM70', 'score': 10.49}, {'connected_gene': 'ELOC', 'score': 10.49}, {'connected_gene': 'GDAP1', 'score': 4.61}, {'connected_gene': 'GC08M074003', 'score': 0.77}, {'connected_gene': 'RNU6-1300P', 'score': 0.37}]
chr8	GH08I073990	73990591	73992966	1.83	[{'connected_gene': 'LY96', 'score': 550.77}, {'connected_gene': 'TMEM70', 'score': 21.21}, {'connected_gene': 'GC08M074003', 'score': 0.28}]
chr8	GH08I074048	74048186	74049199	0.96	[{'connected_gene': 'RNU6-1300P', 'score': 550.77}, {'connected_gene': 'RPL7', 'score': 11.37}, {'connected_gene': 'ENSG00000253341', 'score': 9.88}, {'connected_gene': 'TMEM70', 'score': 5.36}, {'connected_gene': 'ENSG00000254288', 'score': 0.77}]
chr8	GH08I073984	73984765	73985777	0.52	[{'connected_gene': 'DSTNP3', 'score': 550.77}, {'connected_gene': 'TMEM70', 'score': 7.8}, {'connected_gene': 'LY96', 'score': 0.44}]
chr8	GH08I074051	74051195	74052939	0.87	[{'connected_gene': 'ENSG00000254288', 'score': 550.77}, {'connected_gene': 'TMEM70', 'score': 5.04}, {'connected_gene': 'RNU6-1300P', 'score': 0.77}]
chr8	GH08I073967	73966406	73966555	0.57	[{'connected_gene': 'GC08P073966', 'score': 550.77}, {'connected_gene': 'LY96', 'score': 10.6}, {'connected_gene': 'UBE2W', 'score': 10.5}, {'connected_gene': 'TMEM70', 'score': 6.19}, {'connected_gene': 'GC08M073941', 'score': 0.44}, {'connected_gene': 'ELOC', 'score': 0.44}]