PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000299413	[[35684352, 35685328], [35706806, 35706884], [35747471, 35747711], [35756973, 35756993], [35827907, 35829775]]	[[35684659, 35685328], [35706806, 35706884], [35747471, 35747711], [35756973, 35756993], [35827907, 35827935]]
ENST00000532066	[[35745803, 35745916], [35747471, 35747711], [35756973, 35756993], [35827907, 35828171]]	None
NM_017583	[[35684299, 35685328], [35706806, 35706884], [35747471, 35747711], [35756973, 35756993], [35827907, 35832603]]	[[35684659, 35685328], [35706806, 35706884], [35747471, 35747711], [35756973, 35756993], [35827907, 35827935]]

Promoter

Chrom	Start	End	Description
chr11	35684288	35684352	CAGE_peak_2_at_TRIM44_5end
chr11	35684394	35684456	CAGE_peak_1_at_TRIM44_5end
chr11	35684469	35684480	CAGE_peak_3_at_TRIM44_5end
chr11	35684632	35684641	CAGE_peak_7_at_TRIM44_5end
chr11	35684715	35684726	CAGE_peak_9_at_TRIM44_5end
chr11	35684754	35684765	CAGE_peak_6_at_TRIM44_5end
chr11	35684770	35684779	CAGE_peak_10_at_TRIM44_5end
chr11	35684787	35684798	CAGE_peak_11_at_TRIM44_5end
chr11	35684831	35684844	CAGE_peak_4_at_TRIM44_5end
chr11	35684944	35684953	CAGE_peak_5_at_TRIM44_5end
chr11	35745818	35745864	CAGE_peak_16_at_TRIM44_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I035661	35661636	35664172	2.1	[{'connected_gene': 'TRIM44', 'score': 550.77}, {'connected_gene': 'TRAF6', 'score': 22.6}, {'connected_gene': 'ENSG00000251194', 'score': 14.04}, {'connected_gene': 'CD44-AS1', 'score': 12.41}, {'connected_gene': 'COMMD9', 'score': 9.72}, {'connected_gene': 'GC11M035597', 'score': 0.11}]
chr11	GH11I035605	35605489	35606442	0.58	[{'connected_gene': 'TRIM44', 'score': 10.7}, {'connected_gene': 'PAMR1', 'score': 9.53}, {'connected_gene': 'FJX1', 'score': 0.39}, {'connected_gene': 'ENSG00000254669', 'score': 0.34}, {'connected_gene': 'GC11M035597', 'score': 0.08}]
chr11	GH11I035629	35629283	35631076	1.27	[{'connected_gene': 'TRIM44', 'score': 11.4}, {'connected_gene': 'FJX1', 'score': 0.39}, {'connected_gene': 'ENSG00000254686', 'score': 0.31}, {'connected_gene': 'GC11M035597', 'score': 0.1}]
chr11	GH11I035641	35641219	35641962	0.38	[{'connected_gene': 'TRIM44', 'score': 11.69}, {'connected_gene': 'ENSG00000254686', 'score': 0.37}, {'connected_gene': 'FJX1', 'score': 0.34}, {'connected_gene': 'GC11M035597', 'score': 0.1}]
chr11	GH11I035664	35664200	35665200	0.89	[{'connected_gene': 'TRIM44', 'score': 0.77}, {'connected_gene': 'GC11M035597', 'score': 0.11}]
chr11	GH11I035794	35794153	35799314	0.83	[{'connected_gene': 'TRIM44', 'score': 10.62}, {'connected_gene': 'GC11M035597', 'score': 0.44}]
chr11	GH11I035801	35801071	35801220	0.2	[{'connected_gene': 'TRIM44', 'score': 9.89}, {'connected_gene': 'GC11M035597', 'score': 0.77}]
chr11	GH11I035681	35681502	35683766	1.13	[{'connected_gene': 'TRIM44', 'score': 0.37}, {'connected_gene': 'GC11M035597', 'score': 0.13}]
chr11	GH11I035715	35715033	35715222	0.66	[{'connected_gene': 'TRIM44', 'score': 0.23}, {'connected_gene': 'GC11M035597', 'score': 0.16}]
chr11	GH11I035684	35684073	35684222	0.54	[{'connected_gene': 'TRIM44', 'score': 0.34}, {'connected_gene': 'GC11M035597', 'score': 0.13}]
chr11	GH11I035721	35721573	35722986	0.96	[{'connected_gene': 'TRIM44', 'score': 0.22}, {'connected_gene': 'GC11M035597', 'score': 0.18}]
chr11	GH11I035675	35675771	35676601	0.63	[{'connected_gene': 'TRIM44', 'score': 0.39}, {'connected_gene': 'GC11M035597', 'score': 0.13}]
chr11	GH11I035785	35785403	35789359	1.04	[{'connected_gene': 'TRIM44', 'score': 10.63}, {'connected_gene': 'GC11M035597', 'score': 0.37}]
chr11	GH11I035802	35802296	35802484	0.2	[{'connected_gene': 'TRIM44', 'score': 9.89}, {'connected_gene': 'GC11M035597', 'score': 0.77}]
chr11	GH11I035579	35579407	35585046	1.3	[{'connected_gene': 'PAMR1', 'score': 19.95}, {'connected_gene': 'TRAF6', 'score': 10.97}, {'connected_gene': 'TRIM44', 'score': 9.53}, {'connected_gene': 'GC11P035579', 'score': 0.77}, {'connected_gene': 'ENSG00000254669', 'score': 0.77}]
chr11	GH11I035617	35617378	35624710	2.56	[{'connected_gene': 'FJX1', 'score': 557.8}, {'connected_gene': 'TRAF6', 'score': 13.94}, {'connected_gene': 'TRIM44', 'score': 10.85}, {'connected_gene': 'COMMD9', 'score': 9.72}, {'connected_gene': 'PAMR1', 'score': 5.29}, {'connected_gene': 'ENSG00000254686', 'score': 0.28}, {'connected_gene': 'GC11M035597', 'score': 0.09}]
chr11	GH11I035811	35811696	35812368	0.2	[{'connected_gene': 'FJX1', 'score': 11.29}, {'connected_gene': 'TRIM44', 'score': 10.34}, {'connected_gene': 'ENSG00000255060', 'score': 9.08}, {'connected_gene': 'GC11P035814', 'score': 0.77}, {'connected_gene': 'GC11M035597', 'score': 0.44}]
chr11	GH11I035810	35810515	35810932	0.2	[{'connected_gene': 'FJX1', 'score': 11.29}, {'connected_gene': 'TRIM44', 'score': 10.34}, {'connected_gene': 'ENSG00000255060', 'score': 9.08}, {'connected_gene': 'GC11P035814', 'score': 0.77}, {'connected_gene': 'GC11M035597', 'score': 0.44}]
chr11	GH11I036108	36108405	36112610	1.14	[{'connected_gene': 'LDLRAD3', 'score': 10.06}, {'connected_gene': 'TRIM44', 'score': 9.5}, {'connected_gene': 'PRR5L', 'score': 6.14}, {'connected_gene': 'PIR54286', 'score': 0.34}, {'connected_gene': 'LOC101928510', 'score': 0.29}]
chr11	GH11I035859	35859269	35859585	0.22	[{'connected_gene': 'LDLRAD3', 'score': 10.23}, {'connected_gene': 'TRIM44', 'score': 9.83}, {'connected_gene': 'PAMR1', 'score': 8.46}, {'connected_gene': 'KRT18P14', 'score': 0.77}, {'connected_gene': 'PIR45735', 'score': 0.28}]
chr11	GH11I036185	36185809	36186833	0.38	[{'connected_gene': 'LDLRAD3', 'score': 9.57}, {'connected_gene': 'TRIM44', 'score': 9.21}, {'connected_gene': 'PIR46476', 'score': 0.44}, {'connected_gene': 'GC11M036161', 'score': 0.39}]
chr11	GH11I035953	35953385	35953880	0.58	[{'connected_gene': 'ENSG00000254919', 'score': 10.68}, {'connected_gene': 'TRIM44', 'score': 8.97}, {'connected_gene': 'LDLRAD3', 'score': 0.44}, {'connected_gene': 'LOC100420018', 'score': 0.37}]
chr11	GH11I035749	35749633	35752635	0.72	[{'connected_gene': 'GC11M035597', 'score': 0.23}, {'connected_gene': 'TRIM44', 'score': 0.17}]
chr11	GH11I035781	35781316	35781555	0.31	[{'connected_gene': 'GC11M035597', 'score': 0.34}, {'connected_gene': 'TRIM44', 'score': 0.13}]
chr11	GH11I035803	35803983	35804064	0.24	[{'connected_gene': 'GC11M035597', 'score': 550.77}, {'connected_gene': 'TRIM44', 'score': 9.78}]
chr11	GH11I035734	35734330	35736843	0.57	[{'connected_gene': 'GC11M035597', 'score': 0.2}, {'connected_gene': 'TRIM44', 'score': 0.19}]
chr11	GH11I035812	35812931	35813080	0.2	[{'connected_gene': 'GC11P035814', 'score': 550.77}, {'connected_gene': 'FJX1', 'score': 11.29}, {'connected_gene': 'TRIM44', 'score': 10.34}, {'connected_gene': 'ENSG00000255060', 'score': 9.08}, {'connected_gene': 'GC11M035597', 'score': 0.44}]
chr11	GH11I035815	35815646	35817030	0.46	[{'connected_gene': 'PIR35060', 'score': 550.77}, {'connected_gene': 'FJX1', 'score': 11.29}, {'connected_gene': 'TRIM44', 'score': 10.45}, {'connected_gene': 'ENSG00000255060', 'score': 9.08}, {'connected_gene': 'GC11P035814', 'score': 0.77}, {'connected_gene': 'PIR45735', 'score': 0.44}]
chr11	GH11I035893	35893177	35894924	0.6	[{'connected_gene': 'ENSG00000254919', 'score': 11.88}, {'connected_gene': 'LDLRAD3', 'score': 10.51}, {'connected_gene': 'TRIM44', 'score': 9.27}, {'connected_gene': 'KRT18P14', 'score': 0.29}]
chr11	GH11I035989	35989588	35992537	0.31	[{'connected_gene': 'ENSG00000254919', 'score': 11.11}, {'connected_gene': 'LDLRAD3', 'score': 10.37}, {'connected_gene': 'TRIM44', 'score': 9.63}, {'connected_gene': 'GC11M035997', 'score': 0.44}, {'connected_gene': 'ENSG00000255256', 'score': 0.37}]