PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296028	[[74852754, 74853091], [74853233, 74853369], [74853672, 74853914]]	[[74852988, 74853091], [74853233, 74853369], [74853672, 74853820]]
NM_002704	[[74852155, 74853091], [74853233, 74853369], [74853672, 74853907]]	[[74852988, 74853091], [74853233, 74853369], [74853672, 74853820]]

Promoter

Chrom	Start	End	Description
chr4	74853897	74853917	CAGE_peak_1_at_PPBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I073984	73984439	73986352	0.63	[{'connected_gene': 'CXCL5', 'score': 11.07}, {'connected_gene': 'MTHFD2L', 'score': 10.21}, {'connected_gene': 'PF4V1', 'score': 9.11}, {'connected_gene': 'PPBP', 'score': 0.77}, {'connected_gene': 'PF4', 'score': 0.77}]
chr4	GH04I073965	73965064	73965201	0.59	[{'connected_gene': 'PPBP', 'score': 12.28}, {'connected_gene': 'PF4V1', 'score': 10.85}, {'connected_gene': 'MTHFD2L', 'score': 10.06}, {'connected_gene': 'PF4', 'score': 0.37}, {'connected_gene': 'PIR32408', 'score': 0.37}]
chr4	GH04I073923	73923201	73923401	0.52	[{'connected_gene': 'PPBP', 'score': 10.86}, {'connected_gene': 'MTHFD2L', 'score': 10.25}, {'connected_gene': 'PF4V1', 'score': 10.06}, {'connected_gene': 'PF4', 'score': 9.43}, {'connected_gene': 'HNRNPA1P55', 'score': 0.37}, {'connected_gene': 'CXCL1', 'score': 0.23}]
chr4	GH04I074032	74032999	74034453	0.49	[{'connected_gene': 'PPBP', 'score': 11.51}, {'connected_gene': 'MTHFD2L', 'score': 10.71}, {'connected_gene': 'PF4V1', 'score': 10.28}, {'connected_gene': 'CXCL8', 'score': 9.44}, {'connected_gene': 'LOC105377275', 'score': 0.44}, {'connected_gene': 'RN7SL218P', 'score': 0.34}]
chr4	GH04I073843	73843488	73845206	0.83	[{'connected_gene': 'PPBP', 'score': 10.05}, {'connected_gene': 'MTHFD2L', 'score': 9.74}, {'connected_gene': 'CXCL8', 'score': 9.73}, {'connected_gene': 'PF4V1', 'score': 7.31}, {'connected_gene': 'PPBPP1', 'score': 0.77}, {'connected_gene': 'CXCL6', 'score': 0.44}]
chr4	GH04I074023	74023344	74024477	0.46	[{'connected_gene': 'PPBP', 'score': 11.05}, {'connected_gene': 'MTHFD2L', 'score': 10.67}, {'connected_gene': 'RN7SL218P', 'score': 0.39}, {'connected_gene': 'LOC105377275', 'score': 0.39}]
chr4	GH04I073988	73988180	73988239	0.61	[{'connected_gene': 'PPBP', 'score': 550.77}, {'connected_gene': 'GC04M073996', 'score': 0.44}]
chr4	GH04I073902	73902160	73902633	0.43	[{'connected_gene': 'PF4V1', 'score': 10.44}, {'connected_gene': 'PPBP', 'score': 10.42}, {'connected_gene': 'MTHFD2L', 'score': 10.26}, {'connected_gene': 'PF4', 'score': 4.9}, {'connected_gene': 'CXCL1', 'score': 0.29}, {'connected_gene': 'HNRNPA1P55', 'score': 0.28}]
chr4	GH04I073901	73901224	73901373	0.62	[{'connected_gene': 'PF4V1', 'score': 11.04}, {'connected_gene': 'PPBP', 'score': 10.02}, {'connected_gene': 'CXCL1', 'score': 0.29}, {'connected_gene': 'HNRNPA1P55', 'score': 0.28}]
chr4	GH04I073668	73668634	73670636	1.09	[{'connected_gene': 'PF4V1', 'score': 10.89}, {'connected_gene': 'MTHFD2L', 'score': 10.58}, {'connected_gene': 'PPBP', 'score': 4.72}, {'connected_gene': 'LOC105377272', 'score': 0.26}, {'connected_gene': 'RASSF6', 'score': 0.25}]
chr4	GH04I073872	73872001	73873520	1.01	[{'connected_gene': 'PF4V1', 'score': 8.08}, {'connected_gene': 'CXCL8', 'score': 7.88}, {'connected_gene': 'PF4', 'score': 7.02}, {'connected_gene': 'PPBP', 'score': 3.46}, {'connected_gene': 'CXCL3', 'score': 2.71}, {'connected_gene': 'EREG', 'score': 2.45}, {'connected_gene': 'CXCL2', 'score': 2.28}, {'connected_gene': 'CXCL1', 'score': 0.77}, {'connected_gene': 'HNRNPA1P55', 'score': 0.2}]
chr4	GH04I073874	73874484	73874756	0.41	[{'connected_gene': 'PF4', 'score': 8.76}, {'connected_gene': 'CXCL8', 'score': 6.74}, {'connected_gene': 'PPBP', 'score': 5.03}, {'connected_gene': 'PF4V1', 'score': 3.84}, {'connected_gene': 'CXCL3', 'score': 2.92}, {'connected_gene': 'CXCL2', 'score': 2.56}, {'connected_gene': 'EREG', 'score': 2.45}, {'connected_gene': 'CXCL1', 'score': 0.44}, {'connected_gene': 'HNRNPA1P55', 'score': 0.2}]
chr4	GH04I073944	73944400	73944601	0.99	[{'connected_gene': 'CXCL1P1', 'score': 550.77}, {'connected_gene': 'PPBP', 'score': 10.89}, {'connected_gene': 'PF4V1', 'score': 9.97}, {'connected_gene': 'PIR32408', 'score': 0.44}]
chr4	GH04I073762	73762581	73762748	0.49	[{'connected_gene': 'CXCL8', 'score': 14.37}, {'connected_gene': 'PF4V1', 'score': 11.67}, {'connected_gene': 'CXCL6', 'score': 4.57}, {'connected_gene': 'PPBP', 'score': 1.72}, {'connected_gene': 'PF4', 'score': 1.3}, {'connected_gene': 'GC04P073743', 'score': 0.37}, {'connected_gene': 'ENSG00000249051', 'score': 0.37}]
chr4	GH04I073891	73891601	73892373	0.97	[{'connected_gene': 'CXCL3', 'score': 27.88}, {'connected_gene': 'CXCL8', 'score': 16.73}, {'connected_gene': 'PF4V1', 'score': 16.36}, {'connected_gene': 'EREG', 'score': 14.91}, {'connected_gene': 'MTHFD2L', 'score': 12.07}, {'connected_gene': 'PPBP', 'score': 10.26}, {'connected_gene': 'CXCL2', 'score': 8.35}, {'connected_gene': 'CXCL1', 'score': 1.72}, {'connected_gene': 'HNRNPA1P55', 'score': 0.25}]
chr4	GH04I074036	74036937	74040193	1.93	[{'connected_gene': 'CXCL3', 'score': 550.77}, {'connected_gene': 'LOC105377275', 'score': 550.77}, {'connected_gene': 'PPBP', 'score': 10.45}, {'connected_gene': 'CXCL2', 'score': 4.73}, {'connected_gene': 'RN7SL218P', 'score': 0.31}]
chr4	GH04I074016	74016164	74016418	0.58	[{'connected_gene': 'CXCL2', 'score': 30.06}, {'connected_gene': 'CXCL3', 'score': 22.12}, {'connected_gene': 'EREG', 'score': 15.8}, {'connected_gene': 'CXCL8', 'score': 14.36}, {'connected_gene': 'MTHFD2L', 'score': 14.09}, {'connected_gene': 'PPBP', 'score': 11.66}, {'connected_gene': 'RN7SL218P', 'score': 0.77}, {'connected_gene': 'LOC105377275', 'score': 0.34}]